LOC118944663 (ubxn11)


Basic Information

Item Value
gene id LOC118944663
gene name ubxn11
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30840656 ~ 30860491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118944663
ATGGATcagatgatggagagaatggaccgatgggagaggagtggtctcctctCTGCACCTCCGGTTCCTCCGACGagtccaccttctcctccctcctccctttcctacCTGACGGTTCGTGCCCTGGAGTGGGACAACGCGGTCTGGAATGGTCCAGACTCGGCGAAGGAGCACTACCCAGAATTCACCCGCAGCTTTCGTGCCGTATTTGACCACCCTCCAGAGGGCCGAGAGGCGGGTGCACCCCTTAGTGATTTTGAGCTAATGCCCTCCATGATACAGAGGCTGACCCTGCTGGAGAACAAGGTAAAGACCCAAGCCCTGGACGTTGACCACAAGGGGAGCCAAATGAACTTTGACCTGGTGCTCCAGAACATTCAGCAGTAGAACAtactggctggggagagagagtccTTCGTCAGGGTCACGTCCAGAGGGGCACAGCTGGCCCAGCAGCACCTCCTTCCACTAAGGCTCTACAGCAATGGCATCCTCATGTTCAATGGGCCCTTCCGCTCTTACCAGGAAGCCAgcacacagCAGTGCATGCAAGACCTGATGCACGGATACTTCCCTTCTGACCTACAGGACAGGTTTGCAGGTGGGGTGCCCTttcggGTTCacgacaggtgagaggaggagttcCAAGAGAGGCGACCGTGGGCTGAGTTCCCTGGGATGGGGCAGGCTGTTTTGGTTCAACTATATGCATGCCACTTGAGATTCACCCCAAGACTATTTTGCTCTGACTTGAACATTGAgttagccacaggcagaacactGACAATGGACCAATTGCTGAACAGGCTGCCCAAAGTGTTGGTGAAGGCTGGTAGAGTGATTGACATCAGGGACTCAGTGAAAGCCAGTCTACAGGGCTCTTCTGATGCTCCAAACAGCCATGCGGTGACCCTCATAGACATACCAGTGCTACAGGCCTTGAAAGAGAGGTATGCAGGTTGGAGTTGCATgagactgacccccccccccccccccccccccccccaaaactcgGCCCGTGATGTCACCACACTGAGGGTAAAGTCAGAGGATGGCGAGCACACTTACATCATGAAGATGCACTTCTCAGAGACCATAGGTCACCTGCACCACTATCTGGACAAGCACAGagcaccttcttccacatCATATGACATCAGTGCGTTCCCACAGCGCTGGTACAGTGAGGACTGACACTCCTCTCCTGTGGGCTCACTCCCAATGCTGCTCTGCTGCTCAGGACTAGGCCAGGCCCACCTCAATGA
>TU279522
GTGGCCTGTGTTTTGCAGAGACCTCTGTGGCCAGGAGAAACGTTTAGATGAACTTTGACCTGGTGCTCCAGAACATTCAGCAGTAGAACAtactggctggggagagagagtccTTCGTCAGGGTCACGTCCAGAGGGGCACAGCTGGCCCAGCAGCACCTCCTTCCACTAAGGCTCTACAGCAATGGCATCCTCATGTTCAATGGGCCCTTCCGCTCTTACCAGGAAGCCAgcacacagCAGTGCATGCAAGACCTGATGCACGGATACTTCCCTTCTGACCTACAGGACAGGTTTG

Function

symbol description
ubxn11 Predicted to enable ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Orthologous to human UBXN11 (UBX domain protein 11).

NR:

description
UBX domain-containing protein 11 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118944663 False 1265 mRNA 0.55 10 30840656 30860491
TU279522 True 297 lncRNA 0.55 2 30849195 30849811

Neighbor

gene id symbol gene type direction distance location
LOC110518073 csn7a coding upstream 42298 30787180 ~ 30798358 (+)
cd209 cd209 coding upstream 54915 30781946 ~ 30785741 (+)
cd4-1 LOC100136285 coding upstream 65701 30751387 ~ 30774955 (+)
cd4-2.2 LOC100136286 coding upstream 91012 30743021 ~ 30749644 (+)
LOC110518030 LOC106583425 coding upstream 98365 30726006 ~ 30742291 (+)
LOC110518162 LOC106583467 coding downstream 21611 30882102 ~ 30897117 (+)
LOC110518231 LOC106584656 coding downstream 37587 30898078 ~ 30902252 (+)
LOC110518221 LOC106584664 coding downstream 41904 30902395 ~ 30907005 (+)
LOC110518244 LOC106583484 coding downstream 57531 30918022 ~ 30924289 (+)
LOC110518266 LOC106583495 coding downstream 78830 30939321 ~ 31127608 (+)
G244831 NA non-coding upstream 16562 30817708 ~ 30824094 (+)
G244783 NA non-coding upstream 44384 30720530 ~ 30796272 (+)
G244779 NA non-coding upstream 128405 30711946 ~ 30712251 (+)
G244751 NA non-coding upstream 130553 30706055 ~ 30710103 (+)
G244768 NA non-coding upstream 142496 30697901 ~ 30698160 (+)
G244875 NA non-coding downstream 65035 30925526 ~ 30926079 (+)
G244890 NA non-coding downstream 94486 30954977 ~ 30955308 (+)
G244896 NA non-coding downstream 100847 30961338 ~ 30962556 (+)
G244909 NA non-coding downstream 114516 30975007 ~ 30975235 (+)
G244691 NA other upstream 208123 30631770 ~ 30632533 (+)
G244292 LOC106583212 other upstream 703092 30132399 ~ 30137564 (+)
G243679 LOC107756720 other upstream 1149860 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1805942 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 3090930 27725189 ~ 27749972 (+)
G244851 cep85 other downstream 5075 30865566 ~ 30874608 (+)
G244956 NA other downstream 176026 31036517 ~ 31037252 (+)
G244991 NA other downstream 226278 31086769 ~ 31087255 (+)
G244838 NA non-coding upstream 5164 30840265 ~ 30844031 (+)

Expression


Co-expression Network