LOC110518189


Basic Information

Item Value
gene id LOC110518189
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30881668 ~ 30883558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595877.2
GAGTATTGACTTTTTGAAATAGAGAAGCAAAGAACTCGGCTTTGTGGAAGTCACAGGCGAACCTTGCTGCTTGTGCAATTAACATAACAACcaaagaggtagtgatggatttCCCCAAACTTCTTTGCAGCTTCTATTTATTACAGCTGGTGGTCTGTCTTGGTCAGGCAAAGTGTTCAGTTCACAAGCTGGAGACAGGCATCTAAGGAAGTCCATGCCATGGTTCTGGAGATTGTGTGGAGACTATTGTCACCAGTGCAGTGGAGTCTGTGTCTTTTATCCCTTCTCCTGCTTCTCATAGTATCAATGTTATTATGTGCGATCCGTTCAAAAAGTAGAAAGACATCCAGGTTGTCATTGGCTGAAATGGGACCGATCTCTGGTGAAAGGCCTCCAGATTCAATTGAGGTCACGACCTCAGAACTAAGGAAGAACATCATTGGACCAGCATCCTCAAAAAGAAAGTCAACCCAGTCCCAAAGAGAACACAGAGGGTCTTTCCCAGGGCAGGATAACCCAAGGCCGGTGAAGAAGGCTTTGAGGCAGTTGCCTCCCTTACCTGAGCTGGAGAAGAGCAGTGTCCGACGACACAGCAGCTACACTGGGTCCGTAGTGTACGACGTTGTGGCCACAGAGGTCTGTAATCTATGGCCCACTACAGACAACAAGGCTTCTCAACAACATACAGCAGACTGCAGCAACCACCTGGAGGAGGAAGATGAAAAGGGGGAAATTCCGTTCCCTGTCTATGCCAAAGTCAACAAAACCAAAGTTTGCTCGAACTCATCAAGACGTTCACCACTGTATGCCAAAGTGAACAAGACTAGATCCCGGACTGTGAAATCGGAACTACTGTTCTGCAGTGACTGATAATAAGTCAACACTGTGACTGACATGTCCTCCAAATGCTAAATACTCTACTATGTTTTACGCCAAAAGCTTACTTGAGATAAATGCTTCAAATGCCAATCTGATTCATGTAAACGGATGACAAGTGTAATCCAATAGACAAGAGGAGTAAAACGTATCACTCACTCACAGAGCCAAATGCATCGAGTTGTTTTGTACTTTCTGAAATGTTCATATGCGTTTCTTATGTTGTTTCCCAGGCCCACAATGCTGCAAAGACACA
>XM_021595881.2
GAGTATTGACTTTTTGAAATAGAGAAGCAAAGAACTCGGCTTTGTGGAAGTCACAGGCGAACCTTGCTGCTTGTGCAATTAACATAACAACcaaagaggtagtgatggatttCCCCAAACTTCTTTGCAGCTTCTATTTATTACAGCTGGTGGTCTGTCTTGGTCAGGCAAAGTGTTCAGTTCACAAGCTGGAGACAGGCATCTAAGGTCCATGCCATGGTTCTGGAGATTGTGTGGAGACTATTGTCACCAGTGCAGTGGAGTCTGTGTCTTTTATCCCTTCTCCTGCTTCTCATAGTATCAATGTTATTATGTGCGATCCGTTCAAAAAGTAGAAAGACATCCAGGTTGTCATTGGCTGAAATGGGACCGATCTCTGGTGAAAGGCCTCCAGATTCAATTGAGGTCACGACCTCAGAACTAAGGAAGAACATCATTGGACCAGCATCCTCAAAAAGAAAGTCAACCCAGTCCCAAAGAGAACACAGAGGGTCTTTCCCAGGGCAGGATAACCCAAGGCCGGTGAAGAAGGCTTTGAGGCAGTTGCCTCCCTTACCTGAGCTGGAGAAGAGCAGTGTCCGACGACACAGCAGCTACACTGGGTCCGTAGTGTACGACGTTGTGGCCACAGAGGTCTGTAATCTATGGCCCACTACAGACAACAAGGCTTCTCAACAACATACAGCAGACTGCAGCAACCACCTGGAGGAGGAAGATGAAAAGGGGGAAATTCCGTTCCCTGTCTATGCCAAAGTCAACAAAACCAAAGTTTGCTCGAACTCATCAAGACGTTCACCACTGTATGCCAAAGTGAACAAGACTAGATCCCGGACTGTGAAATCGGAACTACTGTTCTGCAGTGACTGATAATAAGTCAACACTGTGACTGACATGTCCTCCAAATGCTAAATACTCTACTATGTTTTACGCCAAAAGCTTACTTGAGATAAATGCTTCAAATGCCAATCTGATTCATGTAAACGGATGACAAGTGTAATCCAATAGACAAGAGGAGTAAAACGTATCACTCACTCACAGAGCCAAATGCATCGAGTTGTTTTGTACTTTCTGAAATGTTCATATGCGTTTCTTATGTTGTTTCCCAGGCCCACAATGCTGCAAAGACACA
>XM_021595883.2
CGAGTATTGACTTTTTGAAATAGAGAAGCAAAGAACTCGGCTTTGTGGAAGTCACAGGCGAACCTTGCTGCTTGTGCAATTAACATAACAACcaaagaggtagtgatggatttCCCCAAACTTCTTTGCAGCTTCTATTTATTACAGCTGGTGGTCTGTCTTGGTCAGGCAAAGTGTTCAGTTCACAAGCTGGAGACAGGCATCTAAGGAAGTCCATGCCATGGTTCTGGAGATTGTGTGGAGACTATTGTCACCAGTGCAGTGGAGTCTGTGTCTTTTATCCCTTCTCCTGCTTCTCATAGTATCAATGTTATTATGTGCGATCCGTTCAAAAAGAAAGACATCCAGGTTGTCATTGGCTGAAATGGGACCGATCTCTGGTGAAAGGCCTCCAGATTCAATTGAGGTCACGACCTCAGAACTAAGGAAGAACATCATTGGACCAGCATCCTCAAAAAGAAAGTCAACCCAGTCCCAAAGAGAACACAGAGGGTCTTTCCCAGGGCAGGATAACCCAAGGCCGGTGAAGAAGGCTTTGAGGCAGTTGCCTCCCTTACCTGAGCTGGAGAAGAGCAGTGTCCGACGACACAGCAGCTACACTGGGTCCGTAGTGTACGACGTTGTGGCCACAGAGGTCTGTAATCTATGGCCCACTACAGACAACAAGGCTTCTCAACAACATACAGCAGACTGCAGCAACCACCTGGAGGAGGAAGATGAAAAGGGGGAAATTCCGTTCCCTGTCTATGCCAAAGTCAACAAAACCAAAGTTTGCTCGAACTCATCAAGACGTTCACCACTGTATGCCAAAGTGAACAAGACTAGATCCCGGACTGTGAAATCGGAACTACTGTTCTGCAGTGACTGATAATAAGTCAACACTGTGACTGACATGTCCTCCAAATGCTAAATACTCTACTATGTTTTACGCCAAAAGCTTACTTGAGATAAATGCTTCAAATGCCAATCTGATTCATGTAAACGGATGACAAGTGTAATCCAATAGACAAGAGGAGTAAAACGTATCACTCACTCACAGAGCCAAATGCATCGAGTTGTTTTGTACTTTCTGAAATGTTCATATGCGTTTCTTATGTTGTTTCCCAGGCCCACAATGCTGCAAAGACACA

Function

NR:

description
uncharacterized protein LOC110518189 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595877.2 False 1132 mRNA 0.45 5 30881668 30883557
XM_021595881.2 False 1129 mRNA 0.45 5 30881668 30883557
XM_021595883.2 True 1130 mRNA 0.45 5 30881668 30883558

Neighbor

gene id symbol gene type direction distance location
LOC110518140 cep85 coding downstream 182 30861014 ~ 30881486 (-)
LOC118951441 NA coding downstream 63566 30813299 ~ 30818102 (-)
LOC110518094 LOC106583440 coding downstream 70386 30800297 ~ 30811533 (-)
p3h3 LOC106583419 coding downstream 156262 30713906 ~ 30725406 (-)
gnb3a LOC106583400 coding downstream 171472 30697807 ~ 30710196 (-)
LOC110518255 nr0b2 coding upstream 47103 30930661 ~ 30933160 (-)
LOC110518336 zadh2 coding upstream 274868 31158426 ~ 31163476 (-)
LOC110518297 LOC106605073 coding upstream 482964 31366522 ~ 31418894 (-)
LOC110518371 LOC106583543 coding upstream 678826 31562384 ~ 31631107 (-)
LOC110518398 NA coding upstream 1076485 31914252 ~ 32004356 (-)
G245249 NA non-coding downstream 43106 30835073 ~ 30838562 (-)
G245316 NA non-coding downstream 59159 30819525 ~ 30822509 (-)
G245308 NA non-coding downstream 100703 30778191 ~ 30780965 (-)
G245279 NA non-coding downstream 169388 30712044 ~ 30712280 (-)
G245347 NA non-coding upstream 11417 30894975 ~ 30897112 (-)
G245349 LOC106584664 non-coding upstream 16619 30900177 ~ 30902960 (-)
G245350 LOC106584664 non-coding upstream 19874 30903432 ~ 30906992 (-)
G245354 NA non-coding upstream 30541 30914099 ~ 30914409 (-)
G245359 NA non-coding upstream 41517 30925075 ~ 30925313 (-)
G244393 LOC106583245 other downstream 664079 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 681898 30199232 ~ 30199770 (-)
G244379 NA other downstream 704260 30174013 ~ 30177408 (-)
G244338 NA other downstream 752454 30088843 ~ 30129214 (-)
LOC110517486 LOC106583166 other downstream 1423622 29456450 ~ 29458390 (-)
G245366 LOC106605077 other upstream 61395 30944953 ~ 30945843 (-)
G248239 LOC106605043 other upstream 2535871 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 3473717 34357275 ~ 34359451 (-)
G249978 NA other upstream 4005948 34889506 ~ 34889954 (-)

Expression


Co-expression Network