LOC110518255 (nr0b2)


Basic Information

Item Value
gene id LOC110518255
gene name nr0b2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30930661 ~ 30933160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595923.2
TCTTGGTAGTACAAGAACATTTGAatgtatttcagcttttcattttgttttTGAGAGTTTGTTCTGTATATCATCAAAAATGGATAACGTATGTCAATGTACAGATTACAATGATAGGCAGTCAAATGCTATCCTTTACAACATCCTCAATCGAGAAAATGACAAGTCAAGCCACAACAACCCGAACTACAACTTTATGCCTCGTAGATGCAACTGTGAGATGCGACGGACAGTGTGCTTGAAAAGTCCAGCAGACATTTGCCAAGAGGCGTCGGGAGTGCTGGTGAAAACAATTCACTTTATGAGGAACTTACCTGCTTTCAACCAACTCCCACTGAACGATCAACTGTCGCTCCTCCAAAGTTGCTGGGGGCCACTCTTTATTTTGGGTCTGGCCCAGGAAGGCATGAGCTTTGACGTCGTCGACACCCCCGCCGAAAGCATGCTGAAAAGAATCCTCTTGAATTCTCAAGAGAGCTCAGAGATGGAACGAGAGCAGCCCACCTTGGCCGGTGTGAACAAACTCAAGGCATGCCTCAAAAAGTTCTGGAGTCTGGATTTAAGTCCAAAGGAGTACGCATACCTCAAGGGCACCATGATATTTAACCCAGATGTGAAAGACCTGACGGCAGCTCTATTCGTGGAGGACTTACAGCAGGAGGCCCAGCATGCTCTGAGGGAGGTGGTCCAACCGCTCCACCCCGCGGACCGAGGCCGCTTCGCTGGCATCCTGCTCGCGGCCTCCATGCTCAAGACCATCACACCCAACCTCATCACAGAGCTCTTCTTCCGTCCTGTCATTGGCCAAGCAGATCTACTGGACTTCCTGGTCGATATGCTCTTCAGTAGGTAGCTTACTGTAGAGCTGATGTACAGAGACCTGATATAGTTTCCCGCTGTGAGGGATATTGAGCCCCCCAGGACTGAGTTGGAGTGCCTGGTCATGTGGTGAAGAGTTTGGCAAATAAGTGCTCGTCATAAGGGGAAACAAAATACACGTGTATTCTTTATTCACAGTAACACTATCGCTGATAGGTTTTCATGTCTGACCAAAtaggaaaatatgttttttttctcaaaaatATGACAGTTTGCTATTGTTTACATCCAACTATGAATGAGCAGCATTTACTGTATATTAGCAACATTTTTGGTAGAAAATTGAGGTCACAATGGCATGTAGTTAACAGACATTTTACTGGTTAGATCAGACAGGATACACTCCAGTCTACAATACATATTCCTTAAAACCATGGATATTGTGCAGAATACTGTTTAGatacattgtttgttttgtgtAATGTTTGCATGAGTAATGTAAATCATTTCTGGGACTGCCCCCAGAATATTCtttctaaatatatttttatacaaTTACTGTGTTATGTCTTTACAATTTGGAATATGGTTTGCGAGATAGGAATACAAACAGAATTAGCCAAGCCAAAGTAGATTAAACGTCCCTGTTGAGGTCTATACTACAGCAGGCATTGCCATTCAAGGAGCTCTTCAAGCTCAATTTAAACATCTCTTCTTAAGCactggaaaaatgtgtagaatttaaaAGCCCACATTCTCCCCCCAAACCATTGGGTTAGAGTGAATCTGTGTTGGGAATTGGGAATGAGTGGCTCATAAGTAATGTTTTCATACATAGACCAGGGTATCACAGTAGTGTGAGAGTGCTCCTCAAGTTTACAACTTCCTGCTCCGGTTCCTGTTGATTCGTATTGTGTTTGAACAGTAAGCTTTATCTGTATTACCTCACCCGTACAGAGGGCACTTTGGAAGGTGGTTTCCCAGCTGGGTTACCCTGTACCGTCAtcttgctgcctctctcctctcacgaGTGGCTCACCGCAGCAACGAGAGACAGTCACTATGCAGTTCCGTTGAGGCTGTCTCAGTCACTAAGCTCCCCTTATCATACCAATAAGATATGAGGAATAATATTTTCAGTCTAAAGGAGCCAAGGTCGGGCTTGAACGAAATGTCACAGTGTTCTACATATCTAAATAAAGAATACAATCTCTACATATGTAGAGCGTCACACCGTCTTAACATTAGGTTGTAATTTAGTTTCCGTAGACTGGACACGTGAACAACTATTCGCAACAACAAATTCAGACTTTTGTGTTTAAGTACAAGTGTTACTGAAAAATAAGTATCTTACTACTCTTTGAATACTTAGTACAGAGTATTTATTTATGCTGCAATAAAGGACAGATCTATCAGATCTCAA

Function

symbol description
nr0b2 Enables several functions, including protein homodimerization activity; transcription corepressor activity; and transcription regulator inhibitor activity. Involved in circadian rhythm and regulation of gene expression. Acts upstream of or within positive regulation of transcription, DNA-templated. Located in chromatin; cytoplasm; and nucleus. Implicated in obesity and type 2 diabetes mellitus.

NR:

description
nuclear receptor subfamily 0 group B member 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG:

id description
K08563 NR0B2, SHP; nuclear receptor subfamily 0 group B member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595923.2 True 2242 mRNA 0.43 2 30930661 30933160

Neighbor

gene id symbol gene type direction distance location
LOC110518189 NA coding downstream 47103 30881668 ~ 30883558 (-)
LOC110518140 cep85 coding downstream 49175 30861014 ~ 30881486 (-)
LOC118951441 NA coding downstream 112559 30813299 ~ 30818102 (-)
LOC110518094 LOC106583440 coding downstream 119379 30800297 ~ 30811533 (-)
p3h3 LOC106583419 coding downstream 205255 30713906 ~ 30725406 (-)
LOC110518336 zadh2 coding upstream 225266 31158426 ~ 31163476 (-)
LOC110518297 LOC106605073 coding upstream 433362 31366522 ~ 31418894 (-)
LOC110518371 LOC106583543 coding upstream 629224 31562384 ~ 31631107 (-)
LOC110518398 NA coding upstream 1026883 31914252 ~ 32004356 (-)
LOC110518433 ct054 coding upstream 1308507 32241403 ~ 32246402 (-)
G245363 NA non-coding downstream 2029 30928236 ~ 30928632 (-)
G245359 NA non-coding downstream 5348 30925075 ~ 30925313 (-)
G245354 NA non-coding downstream 16252 30914099 ~ 30914409 (-)
G245350 LOC106584664 non-coding downstream 23669 30903432 ~ 30906992 (-)
G245349 LOC106584664 non-coding downstream 27701 30900177 ~ 30902960 (-)
G245364 NA non-coding upstream 1445 30934605 ~ 30934858 (-)
G245333 NA non-coding upstream 4176 30937336 ~ 30937499 (-)
G245331 NA non-coding upstream 5730 30938890 ~ 30939206 (-)
G245367 LOC106583495 non-coding upstream 9591 30942751 ~ 30943434 (-)
G245379 NA non-coding upstream 36410 30969570 ~ 30969820 (-)
G244393 LOC106583245 other downstream 713072 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 730891 30199232 ~ 30199770 (-)
G244379 NA other downstream 753253 30174013 ~ 30177408 (-)
G244338 NA other downstream 801447 30088843 ~ 30129214 (-)
LOC110517486 LOC106583166 other downstream 1472615 29456450 ~ 29458390 (-)
G245366 LOC106605077 other upstream 11793 30944953 ~ 30945843 (-)
G248239 LOC106605043 other upstream 2486269 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 3424115 34357275 ~ 34359451 (-)
G249978 NA other upstream 3956346 34889506 ~ 34889954 (-)

Expression


Co-expression Network