LOC110518390 (LOC106583575)


Basic Information

Item Value
gene id LOC110518390
gene name LOC106583575
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31650612 ~ 31660620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596003.2
GGGCGAGGAGGGATTTGAGCGGAGCCATCCAGCGACTGAGGACGCACCAGGTGGAGACAGCAACTGCATTACGCACCAAGAATATATAGAACAGTACACTCTGGGCAGCTAACTTCAGACATATTGACAAAATGTATCGTAAAAAGTATCTTCACTTACATTGTATCGAAAAACAATGAGGAACATTGTAACGAATTGAGATACGATATTGTGTGATGGCTGTATTCAAGAGACTCAAGAGACTTTGAAACAAATTATGCTTTTGTTATCTGAATAGGCAAAAACGTCTGCCAGCTACTGTCAAACGACCCATGAAGACATATGAAGGCATTTGTGCGCCCTACAGTTAAATTTGAAAATAGTTCAGCACTAGAAAAAGTGATGAACTCGTCTGGTTTGGACAACCTAACCGAATTTGCATCATGGTATCTCAACAGAACGGATGTCGAGGAGGAAAATCAGAAACTTCTGTTCGGGATTGGCATGGACAACTTCATTACGCTTTTAGTTTTCGGACTCATCTTTACGCTTGGAGTGTTGGGAAACTCCATGGTCATCACGGTGCTGGCACGTAGTAAACCCGGAAAACCACGGAGCACCACCAACATATTCATCCTCAACCTTAGCATCGCCGACCTGTCCTACCTGCTTTTCTGCATCCCTTTTCAGTCAACTATTTACATGATGCCGACATGGGTTCTGGGTGCCTTCATCTGCAAGTTTATTCATTATTTCTTCACCGTTTCTATGCTGGTCAGTATTTTCACCTTGTCCGCAATGTCGGTGGACCGCTACATTGCCATTGTTCACTCCAGAAAGTCGTCCTACATCCGCGTGTCAAAGCACGCTTTGATCGGAGTGGTGGTCATTTGGATACTCTCTTTGGCCATGGCGGCGCCAGTCGCGGTCATACACAACATATACCAGAGAGACGAGAATCACACCTATTGCTGGGAAGTGTGGCCCGATCAAAACCAAAAGAAAGTCTATGTTGTGTGCACGTTTGTTTTTGGTTATGTATTGCCCCTGCTGCTGATTTCGTTCTGTTACGCAAAGGTTTTAAATCACCTGCACAAAAAACTCAGAAACATGTCCAGAAAGTCAGAGGCATCGAAAAAGAAGactGCCCAGACGGTtcttgtagtggtggtggtgttctgCCTGTCATGGCTCCCCCACCATGTGGTCCACCTGTGGGTGGAGTTTGGCAACTTCCCCTTGACCCAGTGGTCCTTCTTGTTCCGGGTGGCGGCCCACTGCCTAGCCTATAGCAACTCCTCCGTCAACCCTGTCATCTACGCCTTCCTCTCGGAGAACTTCAGGAAGGCCTACAAGCAGGTGTTCAGGTGTCAGGTTACCAACTCCCCTCTCAACGAACTCAAGGAGTTCCGCAGCAAGGTGGACAACACACCGCCCTCCACCAACTGCACCAACGTCTGATTGGAGGTCACCGAGTGCCAGCTCAACTAAGGCCATGATGATTGGCTGTTTTCAAGGGTCCTCCTGAGACATAATGCTATGAGGTTCCATGTTTCGATTCGGAAATGGTATGAAGACAATATGAAGAAAACTGGATATCGTTCAAGCTACATAGGTCCACATCAGCGCTGTTCCATCGTCAAAATAACACCACGCCAGACGATGTGCCATACTGGACGTGTGTAGTGagcgtctctttctctctctttatcttgcttcctctctctcgttctctctgtcatTATCACAGGAAGATTGCAGAGTCTGACTCTCGGGAAAGGAGAGAATGTGGACTTTGATATTTCACTGGCCATCTTATTATACATCAAAACTGTGAATGTTTGGTCATTTGCCTTCTTACATGTGCATGTGCATATTGTTGGTCCTTTGTGATGCTGTATTGCTGCTCTCTTCAGTAGCTATTGAAATGAGTGTCTGTAATATAGCTTCACTCTACATATTAaagcctgatgttactgctgtatATGTTACATGGTAGCCTATCATGGAGTAgttttgaattgttaaaacaTATTAGCTATTGCTCTATTAGATATTGCCCAGAATATAAAAAAATGTACACAGTGTAATTTTGTCTTTAATGTTGAATACTGTTTGAAGAGAAAACATTTTGTTGTTTGAATGTAATGGTCAATTCTCTTGTTGTGAGTTGCCAACGTGTATACAAGGGAAATGTGTGTCCGTATAACCTAAACCTGTCTTGCCATCTGTAATAGACTTTGCAATGAAAAGAAAAAACACGAGTTGAGATTTTTAATAACGCTATTGTATaaactatttaaaaaatattctaATGTGTACTCAATATAAGCCTACTTTATCTTATTTATTGAATTGGTGTATGATATGGAAAGTCCATGTTTTATGGCGTATTGTTTTGTCATGACATTGGCTTGTACATTAGAGCTTGTGCAGGTGCTGTATGTGGTTCAAAGGCATTGTGTGGGATCTCGTTATCCTTTGACTTCCATTTCTGCCCATCATTAGAGAGTAAACTAAAGAAAAATCTTCAAAGATCAGAGTGCCAAGATTTTGTTTGTCTGTGGTAACCACTTACAATCAGAAGTAGacagaaaaaacacacacaattattCTCACAAAAGTATATCCTGCTCCTTTTCACAGCTAACACCACATCCATGTTTGGTAGTTCAGTATATGTGAGAGAGATTTGAAAAAAAAGTTACTTCTTCTCATTTTATGTGTCGAAAGCTAGCTAATACTCTTTAAATATTTTGTTTGGTTAACATAAGCCAATCAGGGATTGCCTACTCTAGATAGAGAGCAATAATGAATacagtaaaaaacaaaaaacatggaAGAGACAGCACATTGGTTATTTCTATCCATGGTATAAGGAGAAAACTCTCTCATACGGATTTGTATATATTTGAGTACTGCCATGGGAAACTCTCTTCGTGGTCATTGTACGGTGCGTGGCTATCTCCATAGCGAGGCGCAGTTGCACACTCTTACTTAAGCGTAAACTAATGTCAGTAATGAACATCTAGAATGGGTAAGGTTTAGGCCTGCTATGAAGTGGTTAGTGTAAGTGGTAGGCAGggtaaggttaagtttaggtatgctACTGTAGCAAGTGGCTAAGGTAAGTGTTAGGGTAAGGTTGGAAAACAAGGACATGCATGGAGTGGAAACTGCTGCTACTCACAGATTACAAATCCTGCAATTTACGTTCCCCCACAATCCCCAACCAAGCAGCGTGACTCTTGTCATGTTTTCACTTACCACCACATAAGGGCGTTAAAATTACACTCAGCTGCACGTAGAATCGTTGGAACTACTAATTATTTGGAACTactaattatttatttcactttgtatTTACGGATGAATGCAACCCAGAGACTATCAAGTGATAATCATGTTAAATGATTCCTTTTTTATCCCTCATTACTCGTTATCAGTGTGTTTCATGAAGACTCTCTAGATGAATTAAGACTCTTGAATGATTATTTCGTTTCTGCTCCAGAACACTGTGAATCAAATATTTGCTTTCTGGAATAGAATAAACTTTCGACACATATCTATCTGTATTtgaatttctaaaatgtttgggAAAATGTAAAATGCTtattttttggtttgtttttgtGCCATATTATGCTGACAAAAATCTACACTTTAATATTATGCCAATGCAATGCTTATACATGTTGATATCACATTAAACTGTTGTGACAAGCAA

Function

NR:

description
galanin receptor type 1-like

GO:

id name namespace
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004966 galanin receptor activity molecular_function

KEGG:

id description
K04230 GALR1; galanin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596003.2 True 3706 mRNA 0.41 3 31650612 31660620

Neighbor

gene id symbol gene type direction distance location
LOC110518348 LOC106583530 coding upstream 92029 31473284 ~ 31558583 (+)
LOC110518315 LOC106583507 coding upstream 447514 31162398 ~ 31203098 (+)
LOC110518266 LOC106583495 coding upstream 523004 30939321 ~ 31127608 (+)
LOC110518244 LOC106583484 coding upstream 726323 30918022 ~ 30924289 (+)
LOC110518221 LOC106584664 coding upstream 745645 30902395 ~ 30907005 (+)
LOC110518407 LOC106583590 coding downstream 346416 32007036 ~ 32024542 (+)
LOC110518416 LOC106583607 coding downstream 489999 32150619 ~ 32229717 (+)
LOC110518684 LOC106583734 coding downstream 608029 32268649 ~ 32271705 (+)
LOC110518706 LOC106583752 coding downstream 987791 32648411 ~ 32711431 (+)
LOC110518733 LOC106583759 coding downstream 1110455 32771075 ~ 32777409 (+)
G245799 NA non-coding upstream 9255 31492207 ~ 31641357 (+)
G245820 NA non-coding upstream 130150 31482714 ~ 31520462 (+)
G245797 NA non-coding upstream 178079 31472332 ~ 31472533 (+)
G245792 NA non-coding upstream 181950 31468443 ~ 31468662 (+)
G245784 NA non-coding upstream 189413 31461000 ~ 31461199 (+)
G246078 NA non-coding downstream 42578 31703198 ~ 31703406 (+)
G246080 NA non-coding downstream 44248 31704868 ~ 31705337 (+)
G246101 NA non-coding downstream 61288 31721908 ~ 31722161 (+)
G246123 NA non-coding downstream 75011 31735631 ~ 31735864 (+)
G246132 NA non-coding downstream 80473 31741093 ~ 31741339 (+)
G244991 NA other upstream 563357 31086769 ~ 31087255 (+)
G244956 NA other upstream 613360 31036517 ~ 31037252 (+)
G245930 NA other downstream 9338 31669958 ~ 31680640 (+)
G246282 NA other downstream 192048 31852668 ~ 31859319 (+)
G248134 NA other downstream 1763169 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 2167600 33828220 ~ 33835275 (+)

Expression


Co-expression Network