LOC110518398


Basic Information

Item Value
gene id LOC110518398
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31914252 ~ 32004356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005043233.1
GCTCCTTGAGGGAGAGTGCGCtggtaaagggagggagggaatgaggcaAACAAGAAACATGTAATCACCCAAACAACCGTTTTAGTCCTTTCCCCCTGGATTTGTGTCGTAAGATAGCCTACAGTATCTACTTCAAAGGATACACAGGGGGCCGCGAGACTGTTACAATGGGACTTGAAGCTTTTGGGAGAATTGGCACCTGAATCGGAGAGAGGTTTGTGCAGAGCGTCCCCATCCACCACGACAACTGTGTTTCCAAGGTGACGTTATTGAGCTTGTAAATAAGAAGAGCCAGACATCATAGAACCTGAAGGATATGGGCCACAGACAGCAAACGTATAATTAGAGCTGTATGGTACGAAGTTTTCTAAAATGTCCAAGCTGGAGGATAATCTCTCCCGATGGGACCTTATGGATCCTTGAGGCACATTTATTCAACACGAGGAAAGATACCTACATACAACGTTTCAAGTCTCTAGGTCAAATGGGGTGACAGATATGAGTGTTTAAGTAAGGCTGCTTATTGTACCGCCCCTATAGGCCAATCGGTGCCATTGTTTTTGACCAATTTACTCATGGCCTCTAAATTCTGTGTGGGGGGAGACTGGTGCCCAAAACTGATGACGTATGTCGTGCAGTGAGAGTTGTGAGAGagtggggacggttcagtctgtcTCCTTATGAGCactccccagctagctagtttatgctTGTGGCGTGAAACTTCAAAAATAATTTGAAACTTGTCTGCCGAAGTTGGGACCTGGGAAAGTGTTCAGAATTATTATATATTTTCTTACACAAAAATGTTGACGTTAATGGCGTAGTTGTACATTTTCGGTGAAAATTTCCACAATAAATGTGCTGTAGCTGTCATCCTGGCCTGATATGGGTTgcactatctagctacttccctctccttactgCAGGACAGAAATGCTCGGCATTATTCGGCAAAGCAGGAACGAAGGAGACACTGTTGTTGTGTTGTCGGCTCGCTGTGCAAACTCTCCTTATTGAGCAATAGACTGCATCAGGGTGACACCCAGATGGTTACTACCAATATTACAAGTTACTATATTACTCGAAGTACAATCAAGTGGAATGGAACAAATTGCCCATGTTAGCTACAGCCAGCGACATGTGATACAGCTGCTGGATAAAGCAACTACTGCCCAGTGGGAAGAATCTCAATGCAACACCATTGCACTGGTTATTCATACCACCGGGTTACGTTGTCTAATTGGCATGTCACGGTGACATCCAGATGGTGACCAATTCTGCAAGTTATTTCTCCCTCGCCCATCGAAATAAACATTGCTTTCTTTTAGTTTGAATGAGAGCCACGCCGCTGTTGCCACTCCACGTCATCATTTTGGGCACCAGGCATGTCCGTATAGCCTCTCCCTTAGTCtgccaatttatttattttttgttgccATTGAGGTTTGAGGTTATTTGAGCAAAAAATATTGTTTGATACCAATAGGTTTCACAGCTTCGCTGTGAACACCTAATAAGTTATATTTGCAAAATAAGTTATTTAAAAATGTGCTAGCTAATTGTTATAATTTATAGTTTATAATATTATAGTTTATAATTATCATTGTTACAACATATAAAATATTGTATTAGGATACATTAATAAGGTATTGTTTCTTGATCTCCTTTTCATTACTTAAGAGTGTCCAtgttcaaaataaataaatacattcaaatTTGAAATATCCATTGAAGATTGGAGGATTATTTCATTGTCCAATGTCCATGAATGCAGAGCACAAATGTGCCTTCTGCTTTGCCCCAACCCCTTTTAAAGACACCAAATTCACCAAAAACTCCATTAAAAAAACACTTCAAGGCTCAACACACTGGTCCAGCATCCACTTCAAAAACATGTCTGGTTGTGTGCAGGCTCTTTTTCTAGCCGGTAGCTATGTCCACTAGATCCAGCTGTGGAATGTCATGTGAAAGCATCTGCTCTGTTTCTGAGCTTCCGTTCgcttggtcattatggacaattaCCGGTTTAAAATTTGATATTGATGTTCACTTTCGGACACTCAGACACTCTGATGCAGTTTGAAAGGATATTtacttatatat
>XR_005043227.1
GCTCCTTGAGGGAGAGTGCGCtggtaaagggagggagggaatgaggcaAACAAGAAACATGTAATCACCCAAACAACCGTTTTAGTCCTTTCCCCCTGGATTTGTGTCGTAAGATAGCCTACAGTATCTACTTCAAAGGATACACAGGGGGCCGCGAGACTGTTACAATGGGACTTGAAGTTTCAGATGATGTCCAGTACGGCACGGCTGCTCAAGCCAATAAACAAGGTGACTAACAATGGAAGTGGACCAGgaatgaagagagggagacatggtatAACCTCACAATACTCAgcagggaga
>TU281228
taaagggagggagggaatgaggcaAACAAGAAACATGTAATCACCCAAACAACCGTTTTAGTCCTTTCCCCCTGGATTTGTGTCGTAAGATAGCCTACAGTATCTACTTCAAAGGATACACAGGGGGCCGCGAGACTGTTACAATGGGACTTGAAGGCAACAAACGCATCAAATGTCCACCCCCCAACCTCTCAGTGGTAATGACCCCAAGAACTATATGACATTATGAGGCATGCTGTCTTATGAGTTGGAGTATGCTGGCTCTTCTAATATAACGGCCCAGAGTGTCGGAGTGAAAGGCAGGGTGCGGTGGAACAAACACAATGGGCTGACCTTCAGCCTGCATCTGCTCAGAGAACACACTAAATGGTCACATTGATGCTCATGTTTAGCTCTTTGCTAAAGGGCCTGATGGAGCCGACAGCGATCGGAGACACAGTGAGGGTCTGGGCCTCTGCCAGCTAGCTAACCCAGGGACAAATTGATTTAATCAAAGCCAGC
>TU281230
taaagggagggagggaatgaggcaAACAAGAAACATGTAATCACCCAAACAACCGTTTTAGTCCTTTCCCCCTGGATTTGTGTCGTAAGATAGCCTACAGTATCTACTTCAAAGGATACACAGGGGGCCGCGAGACTGTTACAATGGGACTTGAAGGCAACAAACGCATCAAATGTCCACCCCCCAACCTCTCAGTGCGGCCCAGAGTGTCGGAGTGAAAGGCAGGGTGCGGTGGAACAAACACAATGGGCTGACCTTCAGCCTGCATCTGCTCAGAGAACACACTAAATGGTCACATTGATGCTCATGTTTAGCTCTTTGCTAAAGGGCCTGATGGAGCCGACAGCGATCGGAGACACAGTGAGGGTCTGGGCCTCTGCCAGCTAGCTAACCCAGGGACAAATTGATTTAATCAAAGCCAGC
>TU281229
taaagggagggagggaatgaggcaAACAAGAAACATGTAATCACCCAAACAACCGTTTTAGTCCTTTCCCCCTGGATTTGTGTCGTAAGATAGCCTACAGTATCTACTTCAAAGGATACACAGGGGGCCGCGAGACTGTTACAATGGGACTTGAAGCTTTTGGGAGAATTGGCACCTGAATCGGAGAGAGGTTTGTGCAGAGCGTCCCCATCCACCACGACAACTGTGTTTCCAAGGTGACGTTATTGAGCTTGTAAATAAGAAGAGCCAGACATCATAGAACCTGAAGGATATGGGCCACAGACAGCAAACGTATAATTAGAGCTGTATGGTACGAAGTTTTCTAAAATGTCCAAGCTGGAGGATAATCTCTCCCGATGGGACCTTATGGATCCTTGAGGCACATTTATTCAACACGAGGAAAGATACCTACATACAACGTTTCAAGTCTCTAGGTCAAATGGGGTGACAGATATGAGTGTTTAAGTAAGGCTGCTTATTGTACCGCCCCTATAGGCCAATCGGTGCCATTGTTTTTGACCAATTTACTCATGGCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005043233.1 False 2106 mRNA 0.41 4 31960043 32004356
XR_005043227.1 False 303 mRNA 0.48 3 31974357 32004356
TU281228 False 501 lncRNA 0.49 4 31914252 32004332
TU281230 False 423 lncRNA 0.51 4 31914252 32004332
TU281229 True 560 lncRNA 0.45 4 31961565 32004332

Neighbor

gene id symbol gene type direction distance location
LOC110518371 LOC106583543 coding downstream 328936 31562384 ~ 31631107 (-)
LOC110518297 LOC106605073 coding downstream 541149 31366522 ~ 31418894 (-)
LOC110518336 zadh2 coding downstream 796567 31158426 ~ 31163476 (-)
LOC110518255 nr0b2 coding downstream 1026883 30930661 ~ 30933160 (-)
LOC110518189 NA coding downstream 1076485 30881668 ~ 30883558 (-)
LOC110518433 ct054 coding upstream 237311 32241403 ~ 32246402 (-)
macf1b LOC106583729 coding upstream 250390 32254746 ~ 32296981 (-)
LOC110518458 NA coding upstream 295492 32299848 ~ 32460015 (-)
LOC110518696 LOC106583742 coding upstream 508821 32513177 ~ 32594495 (-)
if36 if36 coding upstream 592500 32596856 ~ 32638124 (-)
G246316 NA non-coding downstream 84771 31875008 ~ 31875272 (-)
G246307 NA non-coding downstream 92989 31866846 ~ 31867054 (-)
G246293 NA non-coding downstream 99413 31860190 ~ 31860630 (-)
G246291 NA non-coding downstream 99920 31859531 ~ 31860123 (-)
G246256 NA non-coding downstream 127565 31832237 ~ 31832478 (-)
G246502 NA non-coding upstream 2745 32007101 ~ 32007929 (-)
G246506 LOC106583590 non-coding upstream 17977 32022333 ~ 32024508 (-)
G246515 NA non-coding upstream 25222 32029578 ~ 32029784 (-)
G246558 NA non-coding upstream 52959 32057315 ~ 32062006 (-)
G246859 NA non-coding upstream 110845 32115201 ~ 32115436 (-)
G245366 LOC106605077 other downstream 1014200 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 1742454 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 1760273 30199232 ~ 30199770 (-)
G244379 NA other downstream 1782635 30174013 ~ 30177408 (-)
G248239 LOC106605043 other upstream 1415073 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 2352919 34357275 ~ 34359451 (-)
G249978 NA other upstream 2885150 34889506 ~ 34889954 (-)
G249990 NA other upstream 2891602 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 4135756 36140112 ~ 36144572 (-)

Expression


Co-expression Network