LOC110518407 (LOC106583590)


Basic Information

Item Value
gene id LOC110518407
gene name LOC106583590
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32007036 ~ 32024542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596015.2
TGGGCTGAACCTAGCCCAAGGTttaactctctcacacacagcacagtccCCACACACCGAGCTAAAGGCGAGGGCAACAACGGCTACATCAAACCTCCCAAGCAGTGCTCCTGTTACGAACCCTCAAGTGAAGTCGAAGACGATTTTCATGTTCGACATATGAGAACGTAGATCGATCCGGAAAAAAATCTAAAGCTCCTTGGAAAGGACCGGGGTCTTTGGCGAGCAACTGACGGAAAAGAGGGGACTTTGGAGAGCAGCTCGAGACAAACGCGCAGCCGGGAGCAAAGCACCACGAGGGGGAAGAGCACATCTAGCCACCCAGCGCCAGTTGGGGTGTATTTTTTGTACTTTTTATAAACGCTCATTATACAAACGATTAGGTGCGTATAGAGACAAGGAACTATTTCATACTTCATAACTCCGACAAGGCGCGCCGATTCTGAGAAGACGCAAAACAAACTTTGAGTGGCAATTCGAACGAGTATGTTCCTTGCTTGTCCGCTGGCAATCAAACCGAACTTTTATAATTCCCCTTTACAACGGAATTGCATCATCAAGGCGCACTGGGAACAACTCACAACCATCCTCAAAAACTTTATCCGTCCCATCCGCTTCTAGCGGGTGTCGGCGACTGATGTCCAACGGCAAGGAGGTTATTTGAATGAGGATGCTGTCAATTATatgaagatttaaaaaaaagactGAACCACTTCGGGGACATTAAAAACACTTTCAGATGCACACAGCCACATTCACAGGAAGTACTCAGTCGTGGGACAAAAGTTATCTAGCCTAAATGAGATGGAAGAAAAGATGGACGGAAAGTATGAGCATTGAGGCAAACTGTTCGAATTCCGTCATCTAAATTATCAGAAGTTCACAACCCATGTGGAAAATACTACTTAAAAGCATGGCTGAAGTATTGGATACACGCAAGAAAAGAATTGCATCAATGAATCTCCAGCACCAGTGAAAGAAAGCTCCACAGAAAAGGAGAAAAGCTGACCTTCCGCGACGTAGACCCCCATGAATGCTGGGCGTAACAAGCGAGATTTTGTGTGTTGTTGGAGGAGGTGGATagcaagagaagagagacagatagtCTGAGAGTGAAGCAGCTAATTGCTTAGTCTGTCCCTCATTACCATATCCAGTGTGTGTCCGCTGGACTTCAGCCAATCCCTCTCACACAGTACCATTAATCGTAATGCATTATTCACTATCATAATTATATACCGACATGCGCAATCCACGCAACAGCAACACTAGCTAATTCCCGTAATTTTTGCAACCAgactatttgtgattttttttttttcattcggTCGCTGCTCATGTATCTGCAAAAAGCAGAAACATCTCGCAGCGTATCAGCAGCATGTCCCGTCGCAAGCAAGCGAAGCCACAGCACCTCAAGTCGGACGAGGATTCCACAATAGCCGGGGTGGTATCCGAAAATGCCACAGGAGAAGTGCTGGATGACGCAGACAGTGGGAATGAGAGCCGCAGTGGGAGTGAGGAGACCCATGTGTGTGAGAAGTGTTGTGCCGAGTTCTTCAAGTGGTCTGATTTCTGTGAACACCTGACGAGCTGCATCAAGAACCCCCTGGTGCTCATAGTAAACGAAAACGAGACTGAACCCTCCCGGGAGTATCCTGCAGAGCCATCGCCCTCGCCAAGCTGTCGTAGTGACCAGGCAGACAGTGAGGACGCTGGAGAGGGCAGCAGCCACAGCCCCGGTGAGGACGATGAGGGCGCAGAGATAGCCCTGGAGGGGAGCAGTGCCCTGGACAAGGAGGACGAGCCCATGGAGCTGTCGCTTGAGAAACCGGTGGACCTCGAAGAGAGTGACACCTCCCCACAGCCAGATGGTGCTCTACCTCAGCTTTGCGATCCTGCCCCATCCTCTGGGAAGAGCTACAGCATGCCGAGCACCAACGTCACCCTGGAGACGCTACACAGCACCAGCGTGGCAGTGGCTCAGTTCTCCCAGAGTGTCCATGCCGCGGTGGCCGGTAGCGGGGTCTCCCCATTGGCCATCCCCATGATCCTGGACCAGCTGATGGCGCTGCAGCAGCAACAGATCCACCAACTCCAACTGATCGAACAGATCCGCAGTCAGGTGGCGTTGATGCAAAGGCAGCCCTCCGTCACCCAGCCAACCCAGAACCATCACCGCCACCACCACAGCACAGTTGCTGGCTCCCAGGGGCCGTCATCCTCCAGCCTCCCTGCCGTGCCCAGCCAACTCCAGCAGTTACACAACTTCATCACTCCCCCTGTCCACCAGCTACCCATCAGGTTGCCCTCACCGCTAAACAGCCtgggctcctcctcctcctccctcacctctGCTATAGATGGGCCCCTCTTCTCCCATACCCAGCAGAGTAGCAATCAGCAGTCAAATGTTTCGATGCCCAACACCACCTCAGCAAactcctctttccctccatccagtGGTAATGTGCTGTCGTCTCTACTGCCTCCCTGCATGGCTTCAatcacacacagcagcagcagcggagCTGAATCCACAGGTGGAGGAGgcatgagcagcagcagtacagcTCTGCCAAGGAATTCCAGCAGCCCCCTTTCACTAGGCCACAGCAGCCTCCTGAGCACCAGTCCCTCCAATCTACCACTGATACCTCACAGTTCATCTAGCAGTGTCATCTTCCCAAACCCGCTAGCCAGTATAGCTGCCACGGCCAATGCACTTGACCCACTCTCCGCTCTGATGAGGCACCGCAAGGGAAAGCCCCCCAACGTGTCTGTCTTCGACACCAAGCCCAGCTCAGAGGACCCCTTCTTCAAGCATAAGTGTAGGTTCTGTGCCAAGGTGTTTGGCAGTGACAGTGCCCTGCAGATCCACCTGCGCTCTCACACCGGCGAACGGCCCTTCAAGTGCAACATCTGCGGAAACCGGTTCTCCACCAAGGGAAATCTGAAGGTCCACTTCCAGAGGCACAAGGAGAAGTACCCGCACGTCCAGATGAACCCTTATCCCGTGCCAGAATACCTGGATAACGTGCCGACCAGCTCAGGCATACCATATGGTATGTCCTTCCCCCCAGAGAAGCCGGTGACCACCTGGCTGGACAGCAAACCTGTTCTCCCCACAGTCCCCACCTCAGTCGGGCTCCAGTTCCCCACAACTCTCCCCAGCATGATGGGAGGCTACGGTGATTCCCCGAGCCTCACTCCCCTTAGCAGATCACCCCAGAGGCCCTCCCCACCCTCCAGTGAGTGTGCCTCTCGGTCACCTAACCTCTTCACTGAAGCAGGCATGATCACCACCTCACAGTCTCCACAGCCCAACTTAGGGGGTGACATGCCTCCCATTCTTAAACCAGAGGGCATCCACCTGCCCCCAAACCTACCCACTTCCAGGCCTGGTGAGAAcacgaccaccaccaccaccgttaCTCAAGTGGTCCTCGCCACCACGGTCAACGCGACCACATCCACTAGCAGCTATACTGAACCCATCATTGCCCCCTCCTCGGTTTCCCATCCAATCCTTCCCATGATCTCTGATCAGTTCAAGGCCAAGTTTCCGTTCGGCGGCCTCCTGGACTCTATGCAAACGTCTGAGACCTCAAAGCTGCAGCAGCTGGTGGAGAACATCGACAAGAAGATGACCGACCCCAACCAGTGTGTCATCTGTCACCGTGTGCTCAGCTGCCAGAGCGCCCTCAAGATGCACTACCGCATTCACACAGGGGAAAGGCCTTTCAAATGTAAGGTCTGCGGCCGAGCATTCACCACTAAGGGCAATCTGAAAACACACTTTGGGGTCCATCGTTCCAAGCCCCCTCTCCGGGTCCAACACTCCTGCCCCATCTGCCAGAAGAAGTTCACGAACGCTGTAGTCCTGCAACAGCACATCCGCATGCACATGGGGGGCCAGATCCCCAACACCCCCCTGCCTGAGAGTCTTCAGGAGATGGACACCGACCTCTCCTTTGACGAGAAGAGCTTAGACGCCATGAGCAACTACGATGACGAGCTACTGGATGAGATGGAGGCAGCTATGGAGGACGAAGCAGAGCTGAAAGAAGGAGAGATGATGATGGACCCATCCAAACCTCTCCATCCATATTCAGGAATGTCCCCTGGTCGCTCCCCACCTACCTCTGTCATCTCCAGCATTGCTGCTCTGGAGAACCAGATGAAGATGATCGACTCCTCTGTCAATATGAGTCGCTCGTTCGGGCTGAAGCCCATGCAGAATGGTGGCGGGTTTGGAGGGGAGAATGACTTCTTCAACAATGACTCGCTGTATGCCTCGGGGGACCTGGAAGGCCAGAGTGTTGGAAGCCCGGCACTATCTGAGTCCTCAGGCTCCATGCAGCCACTCTCCCCTGCTCACAGTCACCCTGAGAGTCATCGATCCAAGTCCCCAGCCACACTCAACCATAGCAGCAGCACTGCAGCAGAGGGGCAGGAGAACAACGGGATGGCTACAGTGAAGTCTGAGAAGTCAGACACCCCATCCCCGGCACCTGTGTCTGAAGGTAATGTGGCATTGGACCTGACTGCTAGTCTAACCCAGCCTAGCAGGCACTTCATCAAGGAGGAGAACCACTTCAACATGATGTTCCTGGGCAGAGATAGAGgTCTGAGCAACTCTAGCTTGCTAAACACAGCATCCAACATGATCAAAATGGAGATGAATGGGCACAGGCACAGAAAGCCCATGTCCCTGAATGACGGTCCTTACATGCCTGTGGGCATCCAAGTGCCCGCTTCTGCACCCCAGACCAACATGAGCCCCAGTATCACCCCCATGCTGGCACCGCCAACTCCCCGTCGCACCCCCAAGCAGCACAACTgccacaactgtgggaagaacTTCTCCTCGGCTAGTGCCCTGCAGATccatgagcgcacacacacaggagagaaaccattcgGCTGCTCGATCTGTGGAAGAGCCTTCACCACTAAAGGCAACCTGAAGGTGCACATGGGCACCCACATGTGGAACAATGCGCCAGCCCGTCGTGGACGCCGTCTCTCCGTGGAAAACCCCATGGCCTTGCTGGGCGGGGACGCCATGAAGTTTAGCGAGATGTTTCAGAAGGACTTGGCGGCGAGGGCCATGAACGTAGACCCTGGCTTCTGGAACCAGTATGCTGCCGCCATCACCAACGGCCTGGCCATGAAGAACAACGAGATCTCCGTCATCCAGAATGGAGGCCTCCCCCAGTTGCCCGTCAGCCTGGGTGGAGGAGGTATGACCTCGCTAAGGGCCATGTCTGGAGGTATGGACCATATGGACCGGGTGAATGCCAGTAGCAGCCCTCCCATGACTGGGCTGGATAAGACAGTTCTGGAGGTTGGGGCTAGACGCCCCTTCGCTCGATTTATGGAGGAAAATAAAGAGATTGGGATCAattaatgtctttattattagtAAGGAAACAACTGAGGAAAGACAAGAGTCTTACGAAAAGGAAAGAAACTGCTAATCCAGTTTGAACTCTTATGTACTATATTATGTacagaaaacttttttttttggtttggTTTTTGGAAATATAATATTTAGTATTCGTTAGAGGTCTTTGACTTTCGCCCTTTCACCCCTCCTCATTGATATTTCGCTCATACGAAGAATACTTTGTCTCTTGTTTGAGAATATGCCGTCTTGCAAGATTTGCATGGTACTTATTGGTTTCTATCAGTATGTTTGACTGCTTTTAAGGATTATTTTTTGAAAAGTAATATCTTGACTCAATTGTGATGGGAAAGCCTCTTATTGTGGAAGGACTAAAATGAAGCTGAGCGAACTCTTAAATGTGCATAGACTGACTAGCTGCTGTTTGGCTGATGTTTATGTTTGCTCTTAGATAAAGAGCAATGGACTGAAGTAAATTGGAATTATGGTGTTACTGTGCTCGCCTACAATTTTTTTCTCATGAagtagaacacttgaaaaaaCGTTTCAACTATTTTAATCTTTACATTAAGTCTCCCAGCATTGTCTTATAATATTGTCCTGTGTCTTTAGTATTTATGatattgacaacaaaaaaaagcgGGTATACGAAAATATATTTAATGACCCCAGCATTTTATTGATCCTTTTTTTTCTAAACTGCAGACTTCACTTATAAATATCTCTTTCAATAAAGACAACACGTCATTTCAGTTGTACGACAGAGACACATTGTGAAGGTTTTATTTGGATATCTAGCCAAGACTATGTGTAACATGTCTGGTGCACAGTGAAGAAGTTGAGATATCTGAAGCTGCTATTATCACAAACCTgattttaaccttttttttttctttttttttaaagatggggGAAAATGTCATTTTAAAGAAATACATATGTATAGAAATACAGACAACTCTAAAACAGGTATGCATATTTTGTATCACATGAAAATAGACATCCTTTGAGAGTATTTGTCATGTTTGTGAATGCACTTTTTAAACAAGACGTTTTGTCCGTGACTTATCGTTAACCTTTGACTGAGCTGTCTATCACGTGTAGTTTTGATTGTTTTCAGCGTACCACTCCTACTATTTGCAGAGTTGGCCCTCTGGTACGGTATCTTATGCTACTCATCAGAGTACAACCTCATCCACTCAATCAAATCCTTctccaataaaaaaaaaagagagaacagGTCACTTGTGTTTGACTGGTCTCCTTCTCTA

Function

NR:

description
sal-like protein 3

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596015.2 True 6684 mRNA 0.50 4 32007036 32024542

Neighbor

gene id symbol gene type direction distance location
LOC110518390 LOC106583575 coding upstream 346416 31650612 ~ 31660620 (+)
LOC110518348 LOC106583530 coding upstream 448453 31473284 ~ 31558583 (+)
LOC110518315 LOC106583507 coding upstream 803938 31162398 ~ 31203098 (+)
LOC110518266 LOC106583495 coding upstream 879428 30939321 ~ 31127608 (+)
LOC110518244 LOC106583484 coding upstream 1082747 30918022 ~ 30924289 (+)
LOC110518416 LOC106583607 coding downstream 126077 32150619 ~ 32229717 (+)
LOC110518684 LOC106583734 coding downstream 244107 32268649 ~ 32271705 (+)
LOC110518706 LOC106583752 coding downstream 623869 32648411 ~ 32711431 (+)
LOC110518733 LOC106583759 coding downstream 746533 32771075 ~ 32777409 (+)
LOC110518743 eny2 coding downstream 826367 32850909 ~ 32852805 (+)
G246413 NA non-coding upstream 968 32005862 ~ 32006068 (+)
G246352 NA non-coding upstream 102276 31904542 ~ 31904760 (+)
G246324 NA non-coding upstream 127079 31879623 ~ 31879957 (+)
G246190 NA non-coding upstream 209896 31796565 ~ 31797140 (+)
G246170 NA non-coding upstream 237503 31769333 ~ 31769533 (+)
G246524 NA non-coding downstream 10124 32034666 ~ 32034975 (+)
G246619 NA non-coding downstream 84432 32108974 ~ 32109187 (+)
G246845 NA non-coding downstream 443584 32468126 ~ 32468511 (+)
G246850 NA non-coding downstream 448835 32473377 ~ 32473668 (+)
G246851 NA non-coding downstream 450604 32475146 ~ 32475346 (+)
G246282 NA other upstream 147717 31852668 ~ 31859319 (+)
G245930 NA other upstream 326396 31669958 ~ 31680640 (+)
G245799 NA other upstream 381993 31492207 ~ 31641357 (+)
G244991 NA other upstream 919781 31086769 ~ 31087255 (+)
G248134 NA other downstream 1399247 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 1803678 33828220 ~ 33835275 (+)
G248794 NA other downstream 1949934 33974476 ~ 33977835 (+)
G248795 NA other downstream 1981616 34006158 ~ 34013057 (+)

Expression


Co-expression Network