LOC110518416 (LOC106583607)


Basic Information

Item Value
gene id LOC110518416
gene name LOC106583607
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32150619 ~ 32229717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596024.2
CCCTTCTGACAAGCCCTGTGTCACAGCCACCGGGAGTCTCTGGACATCTTAATTAGGCTAAAGCACAACGGAACGACAGCAACACTCATCTAACCATCAGACCAACCCCGAGTGTGTGTGAAAGTGCTGTGAAGATAAGCCCATCGCAATACCTTGCTCTCTTTTCCATTTCAGTTTCTATTGGAGTGCTGTCACATGGATGAAAGTGTTTGAATGAATCTCAAAATCAGCATTCGAGTTTACTTTCTTTATTGACAAATGATGCGTTTCTTTTTGTTTTGACTAATGCACACTTCTACAGTCTAAAATAGTTCGTTTTTTTCCGCGCTTCTCATATGGTACTTACTGCCTGTGATATTATTGCCAACCGTCACAACCACAAAAGTAGACCAATCGCTAGTTGAATGCAGGATACCAGCTGTTTGAGACTCAGCTCCAAATTCAACTTTGGTCCAGTCCTCCCAGCGGCTTTGGGAAAGGAAAGAGGATTGCACTTTCTCACCTCTCTCGCTACCGAGATGAAGTCTGCAGAAGAAGATGCATATagctacactccaaatgtcagcCTGTCCCTGCCACTGGGCATGGGAAACCCCTGTCTGGCCACCCAGTACCACACGATGCAGTCCAGCCCCATTATCTCTGTGTCCTCCTGCCACCAGACAGGCTACGGTCTCCACGATCACAACAACCACAACCCAGCCCAGGGCTACTACATGTCCCACGGCCTGAGGCCTAACGGGGCCCCGGCCCTGGAGAGTCCTCGCATTGAGATCACAGCCTACCACCAGTACcctgaggaggaggtggaggagagcagCACCATGGACCACATCGTCCACCACAAGCGGGGGGTCAACTCCATTGTGACCCTGACGCTGCCAAATGCCGATGGCTACCGCGACCCCAGTTGCCTCAGCCCGGCCAGCAGCGTGTCATCACGTAGCTGCAATTCGGATGCGTCGTCCTACGAGTCCGGCTTTTACAACTATGACAACTCACCCCAGAACTCGCCATGGCAGTCTCCTTGCGTCTCTCCGAAAGgctcgtcctctctcctctcctgcccacACGCTCCTCTCGGCCCCCCATCGACCTCCCCCCGCCACTCACCTTCCACCTCCCCCCAGATCGGGGCCCAAGCCGAAGAGGGCTGGGCGGGGCAAGGGCCCTGTGGAAGCTCCAGGCCCAACTCTCCGGCTTGCAGTGGAGGAGGTGGCGGCGTTGGCGTGGGGAAGAGGAAATACAGCTTCAACAGCACCACCTACAGACAGCCAACCTACTCGCCCAACCAGTCGTCCACACCTTCCCCGCGCGGCTCGCCCAGGGTCAGCGTCACAGACGACAGCTGGCTGGCCAACACCAACCAGTACACCAACTCTGCCATCGTGGCGGCCATCAACGCCCTCACCACCGACGGAGTGGTCGACATGGGCGAGGGAATCCCCGTCAAGGCCCGCAAAACCAACCTAGACCACAGCCCCACGATGAGCCTGAAGACGGAgccgggaggagaggagatgggccCTGGGAGCGAGCTCCTCCAGGAGGACTACATCTCCCGCCTGCCTTTCAAGAAGGAGAACTACTGTGGGGGCTTCCTAGACGTGCCCCAGCAACCCTACTCCTGGTCCAAGCCAAAGCCCTACCTCAGCTCCCTGCCTGCCCTGGATTGGCAGCTGCCGTCTTGCTCTGGCCCGTACAGTCTGCAGATCGAGATGCAGCCCAAGTCCCACCACCGTGCCCACTACGAGACAGAGGGCAGCCGCGGGGCAGTCAAAGCTCCGTCTGGAGGTCATCCGGTTGTACAGCTCTACGGTTACATGGAGAGCGAGCCCCTTACCCTGCAGCTGTTCATCGGGACCGCAGACGACCGCCTCCTGCGACCGCACGCCTTCTACCAGGTCCACCGCATCACGGGCAAGACTGTCTCTACCGCCAGCCACGAGGCCCTGCAGTCCAACACCAAGGTGCTGGAGATCCCTCTGCTGCCCGAGAACAACATGCGAGCCATCATTGACTGTGCAGGGATTCTGAAGCTGCGGAACTCTGACATCGAGCTGCGTAAGGGCGAGACGGACATTGGGCGCAAAAACACGCGTGTGAGGATGGTGTTCCGTGTGCACATCAACCAGCCCAATGGCAGGACAATCTCCCTACAGGCCTCCTCCAACCCCATCGAGTGCTCCCAGCGCTCGGCACAGGAGCTGCCCCTGGTCGAGAAGCAGAGCCTGGACAGCTACCCCGCCACAGGGGGAAAGAAGATCCTCCTTAACGGACACAACTTTCTGCCAGACTCCAAGGTGGTGTTCGTGGAGAAGGCCCAAGATGGACACCACCTATGGGAGACAGAAGCCAAAGTTGACAAGGACTCCTTCAAGTCTACGGTGCTGGTGGCTGAGATCCCCCCCTACAGGAACCAGAGAATATCCAGCCCAGTGCAGGTCAACTTCTACGTCTGCAATGGCAAGAGAAAGAGGAGCCAATACCAGCGCTTCACCTACCTTTCCCCAAACGtCCCGACAATAAAGACAGAACCGAATGATGAATATGAGCCTCTGGGGGCTCATTCCAAGTCTTACCATGGCCAACCCAGGCTCACTCCTATCATACCTGTGGGGGACGCTGACACCTGCCTGGTCGGGGTTTATCCTCCCTGCCCGCCTTGCCATGGCAGCATTGGCAGCATGCCCGCCTCCTCCCCCTGTTCCAGCCCAACACTGCACGACCTGTCCCCCGTGGCTTACCCCAAGTGCCTCtccaccagccctacgcatgccCACAACGGTCTCTTGGCGTCCGCCATCCAGGAGACGCCAGGGCAGTGCCCAGCGCCACTGGTCTGCCCTTCCTCACCTGACCAAGCTCCGCTGGGCATGCTCCACTCCCAGGGCAGCAGCCCGCATCACCTTGGTAGCCCCGGTCCCCATGGCTACCACCCGCTCTACCCCAACAGcagcccctccacctcccctgggtccctcccctccactccaggGGGGGCATCAGAGAGCCCGTTCGCCCAGGCACCACCTTACAGCCCCACCCAGGGACAGAGCCAGACCCAGGCCAGGATAAGTCCTCCCAGCCTGCTGCCGGTAGATGCCAGCCCCCCCTCCCTAGCCGTCACCGTCAAGCGGGAACCCCAGGATCTGGACCAGATGTACCTGGACGATGTCAATGAGATCATCCGAAACGACCTGTCCAGCATCTCAGTGCATCTCAGTACATAAACTCTCTGCAGATACAAAAAGGGACAGAGGCAAAAGGACCCCAAACCAAAGCTCCTATATCCACATGAGGAACCCCTTAACAGAGAGCTTTCACATTACCACTTCCTCATTGCTACATTTCCCAGATGCCTGATTCGCTTGCCCCTCATGACGCTGCAGAACGATTGGCCGACTGGTGGTCATTAACAGGAAACTGCAAAGCTCCATATGAACGAATGTTATAATATAATGTGAGACGGCCTTAGATATAATAGGTGGGACTGTGAGAATTACTACACTTGCCTTAAATGACAACTCTTGCTCTTCCATGGACCAAACAGCTCAGTAAGACTGAATACTTGTTTCTTTACTGATTGCCTCTTCTTTATGTGTGTTGGAATCTAATATGCGGACAAGCCAATGGGTGTGTCATATGTTGGTCAGAGCGTCCTGGCAAACCACAGCAACCCAAGCGGTGCCTTACAACATCACTCACTGACTAGAATGCAATGTCACTTCGATCACGTCAATCATTCGTTTACAGGGAAACAAAAAATGGCTGAAAAATATGTAGGGACGTGTGTATAGGTTAGATTTGtgtattagttttttttttattatgtcCTTGTCCATTTATACTGAATGTTGTGTATGATATTCTTTGTATAAACATGTATTTGAAATGTACTTATGCCTTAGCTcgtcgttttttttttttcaatgccttcctctttctGATGATCCAATGTGTACCACCTCGTTGCTAGCATCTGTCTTGACACCTCGTGCCTCTTCTTTCCTTCTGCTCTGGCCTCCCTCTTCCCTTCTTTCTAAAATATGCACAAATGCTTAGACAATCAGGAAAGAGCCTACTGTACACTTTGCAGGAGAACGACTGGGGTTTGCATGTACATACCATATGATGATAAGGACCATCTAAGACAAAATATGTCCCTTGCCtgtataataaagctagagaaGGATGGAGGCTTCAGCTTGGGAATAATTGATTTCTTCATATCAAAGGATTTTTACCTTGGAAATTATTGTTCAAGCTTCTTCTTTGCTATTAGAGACAGTGGCTCAGTAGGCTTCAATCAGTATGTAATGCACTTTGCCATAGTAGCAGTAACGGGTTTCTCTTCCATCATGACCAAATGTTATAGGATCTAGATTCCTATACTTGGTGTGATAGGACAGACATCCCTTACTGAGCCACGGGGTCTCTTCTTATAAAGGTTGACAGGTCTGCAATCTTTTTCTACGTCGTCGAGTACAATGTCTTTCTTCAGCATGCAGAGAATACTAATGATATATATGATTTCGCTTCACGACACCGTTAACTAGCTTCATGAATAAatgtggactgtaggatagcatGGCTCTATGTAACAGATTGACGTATCGTGCCTTATTCTCCATTGTCTCTCTGCTACAACATGATTGTAACTCTTAATCATTTTCTATCCAGGCACAAAGGTGAAACATATTTCCTCCCTAATATGAAATATTTATGGAAATTCAAATGGTGTTTTATGTACACTCAATGTGttctataaaaaataaaatgaattaaTAAATGACATAATGTTGACCATA
>XM_021596031.2
TGTATCACCCCTCCTCTAAGTCACATTAGGTGGAGTGAGAAAGAGATTTGCATCCTCAGCACTACTGAAGTGTCTGTCAGGAACGagcaccagaacagaacagcatctctaaagaggaaaggagaagacaaaacagacagagacagacaatcgTTAGAGCTGATGTGTTGGAGGCTGTTCTCATCACCCTTAAGCTGAGGCAAAGATGAGCTCCCTTCGTGAAGAACCAGAGTTTGACTTCAACTTTTTGTTTGAGTACAGCCAAGGGGGAGAGTGTGGCCACAGGCCTGACAGAGATGCATATagctacactccaaatgtcagcCTGTCCCTGCCACTGGGCATGGGAAACCCCTGTCTGGCCACCCAGTACCACACGATGCAGTCCAGCCCCATTATCTCTGTGTCCTCCTGCCACCAGACAGGCTACGGTCTCCACGATCACAACAACCACAACCCAGCCCAGGGCTACTACATGTCCCACGGCCTGAGGCCTAACGGGGCCCCGGCCCTGGAGAGTCCTCGCATTGAGATCACAGCCTACCACCAGTACcctgaggaggaggtggaggagagcagCACCATGGACCACATCGTCCACCACAAGCGGGGGGTCAACTCCATTGTGACCCTGACGCTGCCAAATGCCGATGGCTACCGCGACCCCAGTTGCCTCAGCCCGGCCAGCAGCGTGTCATCACGTAGCTGCAATTCGGATGCGTCGTCCTACGAGTCCGGCTTTTACAACTATGACAACTCACCCCAGAACTCGCCATGGCAGTCTCCTTGCGTCTCTCCGAAAGgctcgtcctctctcctctcctgcccacACGCTCCTCTCGGCCCCCCATCGACCTCCCCCCGCCACTCACCTTCCACCTCCCCCCAGATCGGGGCCCAAGCCGAAGAGGGCTGGGCGGGGCAAGGGCCCTGTGGAAGCTCCAGGCCCAACTCTCCGGCTTGCAGTGGAGGAGGTGGCGGCGTTGGCGTGGGGAAGAGGAAATACAGCTTCAACAGCACCACCTACAGACAGCCAACCTACTCGCCCAACCAGTCGTCCACACCTTCCCCGCGCGGCTCGCCCAGGGTCAGCGTCACAGACGACAGCTGGCTGGCCAACACCAACCAGTACACCAACTCTGCCATCGTGGCGGCCATCAACGCCCTCACCACCGACGGAGTGGTCGACATGGGCGAGGGAATCCCCGTCAAGGCCCGCAAAACCAACCTAGACCACAGCCCCACGATGAGCCTGAAGACGGAgccgggaggagaggagatgggccCTGGGAGCGAGCTCCTCCAGGAGGACTACATCTCCCGCCTGCCTTTCAAGAAGGAGAACTACTGTGGGGGCTTCCTAGACGTGCCCCAGCAACCCTACTCCTGGTCCAAGCCAAAGCCCTACCTCAGCTCCCTGCCTGCCCTGGATTGGCAGCTGCCGTCTTGCTCTGGCCCGTACAGTCTGCAGATCGAGATGCAGCCCAAGTCCCACCACCGTGCCCACTACGAGACAGAGGGCAGCCGCGGGGCAGTCAAAGCTCCGTCTGGAGGTCATCCGGTTGTACAGCTCTACGGTTACATGGAGAGCGAGCCCCTTACCCTGCAGCTGTTCATCGGGACCGCAGACGACCGCCTCCTGCGACCGCACGCCTTCTACCAGGTCCACCGCATCACGGGCAAGACTGTCTCTACCGCCAGCCACGAGGCCCTGCAGTCCAACACCAAGGTGCTGGAGATCCCTCTGCTGCCCGAGAACAACATGCGAGCCATCATTGACTGTGCAGGGATTCTGAAGCTGCGGAACTCTGACATCGAGCTGCGTAAGGGCGAGACGGACATTGGGCGCAAAAACACGCGTGTGAGGATGGTGTTCCGTGTGCACATCAACCAGCCCAATGGCAGGACAATCTCCCTACAGGCCTCCTCCAACCCCATCGAGTGCTCCCAGCGCTCGGCACAGGAGCTGCCCCTGGTCGAGAAGCAGAGCCTGGACAGCTACCCCGCCACAGGGGGAAAGAAGATCCTCCTTAACGGACACAACTTTCTGCCAGACTCCAAGGTGGTGTTCGTGGAGAAGGCCCAAGATGGACACCACCTATGGGAGACAGAAGCCAAAGTTGACAAGGACTCCTTCAAGTCTACGGTGCTGGTGGCTGAGATCCCCCCCTACAGGAACCAGAGAATATCCAGCCCAGTGCAGGTCAACTTCTACGTCTGCAATGGCAAGAGAAAGAGGAGCCAATACCAGCGCTTCACCTACCTTTCCCCAAACGtCCCGACAATAAAGACAGAACCGAATGATGAATATGAGCCTCTGGGGGCTCATTCCAAGTCTTACCATGGCCAACCCAGGCTCACTCCTATCATACCTGTGGGGGACGCTGACACCTGCCTGGTCGGGGTTTATCCTCCCTGCCCGCCTTGCCATGGCAGCATTGGCAGCATGCCCGCCTCCTCCCCCTGTTCCAGCCCAACACTGCACGACCTGTCCCCCGTGGCTTACCCCAAGTGCCTCtccaccagccctacgcatgccCACAACGGTCTCTTGGCGTCCGCCATCCAGGAGACGCCAGGGCAGTGCCCAGCGCCACTGGTCTGCCCTTCCTCACCTGACCAAGCTCCGCTGGGCATGCTCCACTCCCAGGGCAGCAGCCCGCATCACCTTGGTAGCCCCGGTCCCCATGGCTACCACCCGCTCTACCCCAACAGcagcccctccacctcccctgggtccctcccctccactccaggGGGGGCATCAGAGAGCCCGTTCGCCCAGGCACCACCTTACAGCCCCACCCAGGGACAGAGCCAGACCCAGGCCAGGATAAGTCCTCCCAGCCTGCTGCCGGTAGATGCCAGCCCCCCCTCCCTAGCCGTCACCGTCAAGCGGGAACCCCAGGATCTGGACCAGATGTACCTGGACGATGTCAATGAGATCATCCGAAACGACCTGTCCAGCATCTCAGTGCATCTCAGTACATAAACTCTCTGCAGATACAAAAAGGGACAGAGGCAAAAGGACCCCAAACCAAAGCTCCTATATCCACATGAGGAACCCCTTAACAGAGAGCTTTCACATTACCACTTCCTCATTGCTACATTTCCCAGATGCCTGATTCGCTTGCCCCTCATGACGCTGCAGAACGATTGGCCGACTGGTGGTCATTAACAGGAAACTGCAAAGCTCCATATGAACGAATGTTATAATATAATGTGAGACGGCCTTAGATATAATAGGTGGGACTGTGAGAATTACTACACTTGCCTTAAATGACAACTCTTGCTCTTCCATGGACCAAACAGCTCAGTAAGACTGAATACTTGTTTCTTTACTGATTGCCTCTTCTTTATGTGTGTTGGAATCTAATATGCGGACAAGCCAATGGGTGTGTCATATGTTGGTCAGAGCGTCCTGGCAAACCACAGCAACCCAAGCGGTGCCTTACAACATCACTCACTGACTAGAATGCAATGTCACTTCGATCACGTCAATCATTCGTTTACAGGGAAACAAAAAATGGCTGAAAAATATGTAGGGACGTGTGTATAGGTTAGATTTGtgtattagttttttttttattatgtcCTTGTCCATTTATACTGAATGTTGTGTATGATATTCTTTGTATAAACATGTATTTGAAATGTACTTATGCCTTAGCTcgtcgttttttttttttcaatgccttcctctttctGATGATCCAATGTGTACCACCTCGTTGCTAGCATCTGTCTTGACACCTCGTGCCTCTTCTTTCCTTCTGCTCTGGCCTCCCTCTTCCCTTCTTTCTAAAATATGCACAAATGCTTAGACAATCAGGAAAGAGCCTACTGTACACTTTGCAGGAGAACGACTGGGGTTTGCATGTACATACCATATGATGATAAGGACCATCTAAGACAAAATATGTCCCTTGCCtgtataataaagctagagaaGGATGGAGGCTTCAGCTTGGGAATAATTGATTTCTTCATATCAAAGGATTTTTACCTTGGAAATTATTGTTCAAGCTTCTTCTTTGCTATTAGAGACAGTGGCTCAGTAGGCTTCAATCAGTATGTAATGCACTTTGCCATAGTAGCAGTAACGGGTTTCTCTTCCATCATGACCAAATGTTATAGGATCTAGATTCCTATACTTGGTGTGATAGGACAGACATCCCTTACTGAGCCACGGGGTCTCTTCTTATAAAGGTTGACAGGTCTGCAATCTTTTTCTACGTCGTCGAGTACAATGTCTTTCTTCAGCATGCAGAGAATACTAATGATATATATGATTTCGCTTCACGACACCGTTAACTAGCTTCATGAATAAatgtggactgtaggatagcatGGCTCTATGTAACAGATTGACGTATCGTGCCTTATTCTCCATTGTCTCTCTGCTACAACATGATTGTAACTCTTAATCATTTTCTATCCAGGCACAAAGGTGAAACATATTTCCTCCCTAATATGAAATATTTATGGAAATTCAAATGGTGTTTTATGTACACTCAATGTGttctataaaaaataaaatgaattaaTAAATGACATAATGTTGACCATA

Function

NR:

description
nuclear factor of activated T-cells, cytoplasmic 1-like isoform X2

GO: NA

KEGG:

id description
K04446 NFATC1, NFAT2, NFATC; nuclear factor of activated T-cells, cytoplasmic 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596024.2 False 4811 mRNA 0.52 10 32150619 32229717
XM_021596031.2 True 4570 mRNA 0.53 10 32152874 32229717

Neighbor

gene id symbol gene type direction distance location
LOC110518407 LOC106583590 coding upstream 126077 32007036 ~ 32024542 (+)
LOC110518390 LOC106583575 coding upstream 489999 31650612 ~ 31660620 (+)
LOC110518348 LOC106583530 coding upstream 592036 31473284 ~ 31558583 (+)
LOC110518315 LOC106583507 coding upstream 947521 31162398 ~ 31203098 (+)
LOC110518266 LOC106583495 coding upstream 1023011 30939321 ~ 31127608 (+)
LOC110518684 LOC106583734 coding downstream 38932 32268649 ~ 32271705 (+)
LOC110518706 LOC106583752 coding downstream 418694 32648411 ~ 32711431 (+)
LOC110518733 LOC106583759 coding downstream 541358 32771075 ~ 32777409 (+)
LOC110518743 eny2 coding downstream 621192 32850909 ~ 32852805 (+)
LOC110518767 NA coding downstream 789694 33019411 ~ 33035356 (+)
G246619 NA non-coding upstream 41432 32108974 ~ 32109187 (+)
G246524 NA non-coding upstream 115644 32034666 ~ 32034975 (+)
G246497 NA non-coding upstream 137033 32013330 ~ 32013586 (+)
G246494 NA non-coding upstream 140849 32009504 ~ 32009770 (+)
G246413 NA non-coding upstream 144551 32005862 ~ 32006068 (+)
G246845 NA non-coding downstream 238409 32468126 ~ 32468511 (+)
G246850 NA non-coding downstream 243660 32473377 ~ 32473668 (+)
G246851 NA non-coding downstream 245429 32475146 ~ 32475346 (+)
G246852 NA non-coding downstream 245737 32475454 ~ 32475761 (+)
G246853 NA non-coding downstream 246980 32476697 ~ 32476949 (+)
G246282 NA other upstream 291300 31852668 ~ 31859319 (+)
G245930 NA other upstream 469979 31669958 ~ 31680640 (+)
G245799 NA other upstream 525576 31492207 ~ 31641357 (+)
G244991 NA other upstream 1063364 31086769 ~ 31087255 (+)
G244956 NA other upstream 1113367 31036517 ~ 31037252 (+)
G248134 NA other downstream 1194072 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 1598503 33828220 ~ 33835275 (+)
G248794 NA other downstream 1744759 33974476 ~ 33977835 (+)
G248795 NA other downstream 1776441 34006158 ~ 34013057 (+)

Expression


Co-expression Network