LOC110518433 (ct054)


Basic Information

Item Value
gene id LOC110518433
gene name ct054
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32241403 ~ 32246402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596037.2
ttgaccccccctccccactGCTACTGCAGCTTGCTCTAGTGCTCTTGGGGCCGCAGGGAGGCAGAGCGACAGGGCACATGGATAAATCATTTTCGAAAGAGGCTCCTTTCAAACCCGGGGGATTAGAGTGTCATAGAGATGAGGAGCCTGCGCACTGCCTGTTCTGTCAGTTGAATGGGAGACACAGAAgtcacgtgagtgtgtgtgtgtgcgtgtatgtgagagtgtgtgtaagagagataaAGACGGGGGGAGGGAATATGAACTGAATGGGCACACATGCTGGCTGATGTAATAAAAATAATGCTCTGATCACAACGGAGTGAGAAGTTACCcaagagagaaggagatataATAGGCAGTCCCACTCCATCACAAGGTCCTTTATGCAAGTTGTTTactggctgtgcccctgcccttCACCATGACTCTCCTAACCCACGTGCTGGCATGCCTTTTTGGCATGGGCTCCTGGGTGGCCATCAACGGGATATGGGTGGAGCTGCCCCTCATCGTGCCAGAAATCCCAGAGGGTTGGTACCTGCCCTCTTACCTCACTGTGCTCATCCAGATGGCCAATGTGGGGCCCCTTTTCGTCACCCTCATGCACCGCTTCCGCCCGGGCAAGCTGGACGAGCGACCCGTCATCTACTCCATAGTGGGCCTGGGAGTGGTCGCCACCTTCCTCCTGGCCTTCTTCTGGAAGCACACGGTGCCCTTAGCGGGCGCTACGCATAGTGTCCCCCTTCTAGTGCTCTGTTTCCTAATCTCTGTGGTGGACTGCACCTCCTCGGTCACCTTCCTGCCCTTCATGATGCGCCTCGGTCCCCAGTACCTCACTACGTACTTTGTAGGGGAGGGCGTTAGTGGCTTGGTGCCTGCCGTAGTGGCTCTGGTGCAGGGGGTGGGTGTGGTTCACTGTCGGAATGCTACAGTGGCTAGCCTAGCCAATGGGACCTTAGGGGTTAACACCACTGTAGGGGCCAATGGAGAGCTCCAGGCTGAATACCAGCCCGCTAACTTCTCGGCCCaggtcttcttcctcttcctcagtgCCATGATGGTGGTGTGTCTGGCCGCCTTCCTCCTGCTCAACCACCACCCGGCCGTGGCCAGGGAGAGGAAGTGCGAGCTATACTTCAACGGAGGCCTGGCAGAGGAGAAGAGCGACCAAGCCCTGTCCCTGTCTCACAGACCTCAAGAGGAGAAGGCCATGATCAGTTCTCCGGAGAGCCAGCAGAGAGCCCGGCAGAGCTCCTTCGGGACGGGCTTCTACAGTGGGCCGGAGCTGGCGTTCATCTTTGTGGTTCTGGCTTGGGTCAATGCCCTGACCAATGCAGTGCTGCCCTCAGTGCAGTCTTACTCCTGTCTGCCCTACGGGAACCAGGCCTACCATCTGGCGGCCACCATGGCAGCCGTGGCCAACCCCGTGGCCTGCTTCATTGCCATGTTCCTGCCCTTAAGGTCGTTGGTGCTGATTGGGATTCTGACAATAGTTGGGACAGGGTTTGGTACTTACATCATGGCCATGGCTGCACTGAGCCCGTGTCCTCTACTGGTCCACAGCGTCTCAGGCACCGCACTCATAGTCATAGCCTGGATGTTGTTTGTCCTGACCCTCTCCTATGTAAAGGTGATCATTGGGGTGATCCTTCGGGATGAGGGTCACAGCGCCCTCGTCTGGTGTGGAGCGGTAGTGCAGCTTGGCTCCATGCTGGGTGCCCTGTCCATGTTTCCCTTGGTCAGTGTCTATGGACTCTTCAAATCAGGGGACCCTTGTAACACCAAGTGCACAAAGTAGGGATCAAGACATGGCTTACTGTTGAAACTCACTGTAGAAAACAAAAATGGTTGACACTGGAAATATATCTTTCATCATGTGAGTTTGCCTCTTTAAACTGATTTTGAGGTATCTCGTCTGTTGCGTAAGCAATGAAACATCTCCCTATGGTTGCGGAAGGATCTCTTTGAAGCACATCCTCAGATTAGGAACTAAATGGTACCAAATCGCTTGTGTTTATTTACTGTTGAGTTAAGTTTCAAAACGTTTTGCCTCAGATGTAGGgccttaatttgatcaccctgttgcaagaTAGATTTTTCTGCAATGCAGTAACTTAAAAGGTTTAAAAggtttaaaaggcttctgaagtttgcaatttccactttgacatttcagacttaattttcccttatgaaaaaaaTATCATCCCCTACAAAAAtgcccattaattataatccaaataataattcaaattgcctgttgttgcaggattattttcctgctgtagcaaactggctaaaATTAAGATACGAAATCTAtacagtgtgccctaatgaatacgactCAGTTTGCCTATATTGAGGTAAACACCGTGGGAGGCCAGTGTATTGATGTCTCAGGCTAGACTTCTATTGTTACAAAGACCACAAAGATGATCAAATTGTATTGCTAAGCTTTTTACAAATCTTCTTTAAAGAAGATGAATGCCTTTTTTTGCTTGAAGGGTAATTAAGTACAGTGATATAATAGTGATGATTGGAATGTGTTACTGGGACAAAACAGTGTCTTCATTTTTGAGTTTCTAGAACTGCAAATGTCAACCAAAAGATAATTTATGTTTATTCTTTACCAACGTTTGTGTTACATTATTTTGTATACGACCTTACTGCAGttataatgtaatgtactgtaattatGTATGGCTCATGTCAATTAAAATGTAtacttacagtatg
>XM_036973845.1
TAAttgaccccccctccccactGCTACTGCAGCTTGCTCTAGTGCTCTTGGGGCCGCAGGGAGGCAGAGCGACAGGGCACATGGATAAATCATTTTCGAAAGAGGCTCCTTTCAAACCCGGGGGATTAGAGTGTCATAGAGATGAGGAGCCTGCGCACTGCCTGTTCTGTCAGTTGAATGGGAGACACAGAAgtcacgtgagtgtgtgtgtgtgcgtgtatgtgagagtgtgtgtaagagagataaAGACGGGGGGAGGGAATATGAACTGAATGGGCACACATGCTGGCTGATGTAATAAAAATAATGCTCTGATCACAACGGAGTGAGAAGTTACCcaagagagaaggagatataATAGGCAGTCCCACTCCATCACAAGGGTGGAACAGATGGACTTAAAAGAGGCTTGTGGAATGATGATCTCTTCCGTGTAGGATGGATTCAAGCTGAAGAAGAACCAGGACGAGAGGAACTAGGGTTGAGTTCCCGTCCTTTATGCAAGTTGTTTactggctgtgcccctgcccttCACCATGACTCTCCTAACCCACGTGCTGGCATGCCTTTTTGGCATGGGCTCCTGGGTGGCCATCAACGGGATATGGGTGGAGCTGCCCCTCATCGTGCCAGAAATCCCAGAGGGTTGGTACCTGCCCTCTTACCTCACTGTGCTCATCCAGATGGCCAATGTGGGGCCCCTTTTCGTCACCCTCATGCACCGCTTCCGCCCGGGCAAGCTGGACGAGCGACCCGTCATCTACTCCATAGTGGGCCTGGGAGTGGTCGCCACCTTCCTCCTGGCCTTCTTCTGGAAGCACACGGTGCCCTTAGCGGGCGCTACGCATAGTGTCCCCCTTCTAGTGCTCTGTTTCCTAATCTCTGTGGTGGACTGCACCTCCTCGGTCACCTTCCTGCCCTTCATGATGCGCCTCGGTCCCCAGTACCTCACTACGTACTTTGTAGGGGAGGGCGTTAGTGGCTTGGTGCCTGCCGTAGTGGCTCTGGTGCAGGGGGTGGGTGTGGTTCACTGTCGGAATGCTACAGTGGCTAGCCTAGCCAATGGGACCTTAGGGGTTAACACCACTGTAGGGGCCAATGGAGAGCTCCAGGCTGAATACCAGCCCGCTAACTTCTCGGCCCaggtcttcttcctcttcctcagtgCCATGATGGTGGTGTGTCTGGCCGCCTTCCTCCTGCTCAACCACCACCCGGCCGTGGCCAGGGAGAGGAAGTGCGAGCTATACTTCAACGGAGGCCTGGCAGAGGAGAAGAGCGACCAAGCCCTGTCCCTGTCTCACAGACCTCAAGAGGAGAAGGCCATGATCAGTTCTCCGGAGAGCCAGCAGAGAGCCCGGCAGAGCTCCTTCGGGACGGGCTTCTACAGTGGGCCGGAGCTGGCGTTCATCTTTGTGGTTCTGGCTTGGGTCAATGCCCTGACCAATGCAGTGCTGCCCTCAGTGCAGTCTTACTCCTGTCTGCCCTACGGGAACCAGGCCTACCATCTGGCGGCCACCATGGCAGCCGTGGCCAACCCCGTGGCCTGCTTCATTGCCATGTTCCTGCCCTTAAGGTCGTTGGTGCTGATTGGGATTCTGACAATAGTTGGGACAGGGTTTGGTACTTACATCATGGCCATGGCTGCACTGAGCCCGTGTCCTCTACTGGTCCACAGCGTCTCAGGCACCGCACTCATAGTCATAGCCTGGATGTTGTTTGTCCTGACCCTCTCCTATGTAAAGGTGATCATTGGGGTGATCCTTCGGGATGAGGGTCACAGCGCCCTCGTCTGGTGTGGAGCGGTAGTGCAGCTTGGCTCCATGCTGGGTGCCCTGTCCATGTTTCCCTTGGTCAGTGTCTATGGACTCTTCAAATCAGGGGACCCTTGTAACACCAAGTGCACAAAGTAGGGATCAAGACATGGCTTACTGTTGAAACTCACTGTAGAAAACAAAAATGGTTGACACTGGAAATATATCTTTCATCATGTGAGTTTGCCTCTTTAAACTGATTTTGAGGTATCTCGTCTGTTGCGTAAGCAATGAAACATCTCCCTATGGTTGCGGAAGGATCTCTTTGAAGCACATCCTCAGATTAGGAACTAAATGGTACCAAATCGCTTGTGTTTATTTACTGTTGAGTTAAGTTTCAAAACGTTTTGCCTCAGATGTAGGgccttaatttgatcaccctgttgcaagaTAGATTTTTCTGCAATGCAGTAACTTAAAAGGTTTAAAAggtttaaaaggcttctgaagtttgcaatttccactttgacatttcagacttaattttcccttatgaaaaaaaTATCATCCCCTACAAAAAtgcccattaattataatccaaataataattcaaattgcctgttgttgcaggattattttcctgctgtagcaaactggctaaaATTAAGATACGAAATCTAtacagtgtgccctaatgaatacgactCAGTTTGCCTATATTGAGGTAAACACCGTGGGAGGCCAGTGTATTGATGTCTCAGGCTAGACTTCTATTGTTACAAAGACCACAAAGATGATCAAATTGTATTGCTAAGCTTTTTACAAATCTTCTTTAAAGAAGATGAATGCCTTTTTTTGCTTGAAGGGTAATTAAGTACAGTGATATAATAGTGATGATTGGAATGTGTTACTGGGACAAAACAGTGTCTTCATTTTTGAGTTTCTAGAACTGCAAATGTCAACCAAAAGATAATTTATGTTTATTCTTTACCAACGTTTGTGTTACATTATTTTGTATACGACCTTACTGCAGttataatgtaatgtactgtaattatGTATGGCTCATGTCAATTAAAATGTAtacttacagtatg
>TU281799
TCATGGCCATGGCTGCACTGAGCCCGTGTCCTCTACTGGTCCACAGCGTCTCAGGCACCGCACTCATAGTCATAGCCTGGATGTTGTTTGTCCTGACCCTCTCCTATGTAAAGGTGATCATTGGGGTGATCCTTCGGGATGAGGGTCACAGCGCCCTCGTCTGGTGTGGAGCGGTAGTGCAGCTTGGCTCCATGCTGGGTGCCCTGTCCATGTTTCCCTTGGTCAGTGTCTATGGACTCTTCAAATCAGGGGACCCTTGTAACACCAAGTGCACAAAGTAGGGATCAAGACATGGCTTACTGTTGAAACTCACTGTAGAAAACAAAAATGGTTGACACTGGAAATATATCTTTCATCATGTGAGTTTGCCTCTTTAAACTGATTTTGAGGTATCTCGTCTGTTGCGTAAGCAATGAAACATCTCCCTATGGTTGCGGAAGGATCTCTTTGAAGCACATCCTCAGATTAGGAACTAAATGGTACCAAATCGCTTGTGTTTATTTACTGTTGAGTTAAGTTTCAAAACGTTTTGCCTCAGATGTAGGgccttaatttgatcaccctgttgcaagaTAGATTTTTCTGCAATGCAGTAACTTAAAAGGTTTAAAAggtttaaaaggcttctgaagtttgcaatttccactttgacatttcagacttaattttcccttatgaaaaaaaTATCATCCCCTACAAAAAtgcccattaattataatccaaataataattcaaattgcctgttgttgcaggattattttcctgctgtagcaaactggctaaaATTAAGATACGAAATCTAtacagtgtgccctaatgaatacgactCAGTTTGCCTATATTGAGGTAAACACCGTGGGAGGCCAGTGTATTGATGTCTCAGGCTAGACTTCTATTGTTACAAAGACCACAAAGATGATCAAATTGTATTGCTAAGCTTTTTACAAATCTTCTTTAAAGAAGATGAATGCCTTTTTTTGCTTGAAGGGTAATTAAGTACAGTGATATAATAGTGATGATTGGAATGTGTTACTGGGACAAAACAGTGTCTTCATTTTTGAGTTTCTAGAACTGCAAATGTCAACCAAAAGATAATTTATGTTTATTCTTTACCAACGTTTGTGTTACATTATTTTGTATACGACCTTACTGCAGttataatgtaatgtactgtaattatGTATGGCTCATGTCAATTAAAATGTAtacttacagtatgtacatgttttgtatttctgcacTAATTGCTGACCTCATTATCAACTTTCTGTGGTTTATTTTTCACCAGCATGGATATAAAGCATCACTGTAATCCTAAtcatacttacagttgaagtcggaaagtttacatacaccttagccaaaaacatttaaactcagttttcacaattcctgacatctaatcctagtaaaaatttcctgtcttaggtcagttaggatctttATTAGTTAggaactttattttaagaatgtgaaatgacag

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596037.2 False 2739 mRNA 0.49 4 32241667 32246399
XM_036973845.1 False 2851 mRNA 0.49 5 32241667 32246402
TU281799 True 1483 lncRNA 0.38 2 32241403 32243273

Neighbor

gene id symbol gene type direction distance location
LOC110518398 NA coding downstream 237311 31914252 ~ 32004356 (-)
LOC110518371 LOC106583543 coding downstream 610560 31562384 ~ 31631107 (-)
LOC110518297 LOC106605073 coding downstream 822773 31366522 ~ 31418894 (-)
LOC110518336 zadh2 coding downstream 1078191 31158426 ~ 31163476 (-)
LOC110518255 nr0b2 coding downstream 1308507 30930661 ~ 30933160 (-)
macf1b LOC106583729 coding upstream 8344 32254746 ~ 32296981 (-)
LOC110518458 NA coding upstream 53446 32299848 ~ 32460015 (-)
LOC110518696 LOC106583742 coding upstream 266775 32513177 ~ 32594495 (-)
if36 if36 coding upstream 350454 32596856 ~ 32638124 (-)
LOC110518723 tmm74 coding upstream 511291 32757693 ~ 32760895 (-)
G246859 NA non-coding downstream 126231 32115201 ~ 32115436 (-)
G246558 NA non-coding downstream 179661 32057315 ~ 32062006 (-)
G246515 NA non-coding downstream 211883 32029578 ~ 32029784 (-)
G246506 LOC106583590 non-coding downstream 217159 32022333 ~ 32024508 (-)
G246502 NA non-coding downstream 233738 32007101 ~ 32007929 (-)
G247070 NA non-coding upstream 218591 32464993 ~ 32465246 (-)
G247072 NA non-coding upstream 221331 32467733 ~ 32468547 (-)
G247075 NA non-coding upstream 224493 32470895 ~ 32471171 (-)
G247079 NA non-coding upstream 227841 32474243 ~ 32474478 (-)
G245366 LOC106605077 other downstream 1295824 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 2024078 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 2041897 30199232 ~ 30199770 (-)
G244379 NA other downstream 2064259 30174013 ~ 30177408 (-)
G248239 LOC106605043 other upstream 1173027 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 2110873 34357275 ~ 34359451 (-)
G249978 NA other upstream 2643104 34889506 ~ 34889954 (-)
G249990 NA other upstream 2649556 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 3893710 36140112 ~ 36144572 (-)

Expression


Co-expression Network