LOC110518696 (LOC106583742)


Basic Information

Item Value
gene id LOC110518696
gene name LOC106583742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32513177 ~ 32594495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596144.2
TTCATGCACTAGGACCTTGAGGGAGCCTCGGTGTAGCGTGATGACCTAGGCTGCTAAATAGCATGTGTCATCTTCATTATCTAAAATAATAAGAAAAAAACACTTCACTCTGGTCAAGGGGCTTCTAATTCTGAGCAGCCCCAAAGATCTAGACATCTCCACGTGACAGGAGCAGCTATATGAGAAAGCAGCCCAAGCATCAGGACCAGTAGTAACCTACCACTTCACCATCTGCTCGAAGCGCAAATGCAGACAATCTAGAGGAGAATCTATTGGCTTCACATCCTTTGCTTTTAAAAAACCCAACGATAAACGGGACGTCCGAATGGTGTAGACAAGTTGGAGTGAAAAAGGACACGCTCTCCGCGGGGAAATAGGTATTACCGGAATAAAACTCGCGTGCGTCTCAAGGAGAAGGGAGATCACTCGGACTTCTGTTCTCTTCAGAATAACTTTTCATACAAGAGGTGATGCTGTATGCTCCAGACCCGCTGTGGCTTTCTGAAGTGGATTTAGACTGTCACATGCAGcacgCAAAGGTACACTTGTGAATGAAGGAACGGTGATCTTCATAAAATGATATTATCCCGCGGTGAGATACTATGTTGTCGCTGCTCGTTTAATGTGTGACAAATTGGAATCATTCAAGAAACTGGAGGAAGCGAACCAGATAATTCATCCCAAACACCATTGGCACTTCTTATTCGAGTCGGAACACCAGCCGTCCAGATGCAGTTTCGACTTTTCTCATTGACTTTAATCGTGTTGAACTGTATGGAGTACAGCAACTGTCAAACGCAGTCAAATCGCTGGAGGAGGAACAAAAGAGCTAGCTATGGCGTGTACCCCATCTGCAAGGGCTGCTCGGTGTGCTCCAAGGACAATGGCTGCGTGAACTGCCAGCCCAAGCTCTTCTTGTTCCTgcggagggagaggatgaggcagTACGGCGAGTGTCTCCACGCATGTCCGACGGGATACTATGGCATTCGAGCTCCGGAGATCAACACGTGCTCCCGGTGCAGGATAGATAACTGTGAGTCCTGCTTCAGTAAAGACTTCTGCACCAAGTGCAAGGCAGAGTTTTACCTGCACAAAGGGCGCTGCTCCGAGAAGTGCCCCGAGGGCTTTGCGCCCCTGGAGGACACCATGGAGTGTGGAGAAGGCTGCGAGGTGGGCCAGTGGAGCGAGTGGGGGTCCTGCACCAGGAGAAACAAAACCTGCGGCTTCAAGTGGGGTCTGGAAACCCGGACGCGGCACATCGTGAAGAAGCCGCCCAAGGACACTATACCCTGCCCCACTATCGCCGAGTCCAAGAGATGCAAAATGGCCATTAGGCACTGCAGGAGAGGAGAATCAGGGAAGCACCGACCCAAAGAACCAAAGAAGAAGTCCAACAAGCAGAGGCTCCGGTTCCAGGCCCAGAACCAGCACAGTGACCACCTGGCCTCCATGAGCtccagccagtagaggactggaacccccccccctccccttggaACCTAAACAACACAAAGCTGCTAGCTGCTGCTccacaaatcccccccccccgtcaACCCACCCCCCTACCCCAGCACACAGTCACACTACACCCTATTAATGACCCTACACATGTCTATGGTTGTAGTAAAGTACACACAtgccctctgtccctgtctctctctgccttctgctGCTTCCCTCGTACCGTAGAGTACCGCATCGTAGTGTACCGCTGGCAGATCAGCCAATCAGCTTCCCCCTTTGAGCCCACTGTGACATCATAGAACTCATAGAAACATTTGTTCCCTTTGCTCACCCGTCATGTACGTCAGGTTAGAACAAACCAAACGAGGGGCGaccgacacacacagactgacggACTGAGGACGCGAAGGAGCAGAAGGAGAATGAGGAATGAGATGGATGTTGATAATAGTGATGACGGTCCAGCTAAGGGGGCAATGGAAGACGTCGAGACGACGATTCCGACGGAGAGAGGAAGAGCGTGCAAAGAGATGGAATGAGAGGATGATCGGGAGATTTGGCAGAAGCAACGAGGGTGACGGCTCTAAGTGACATCTTTAAATCATTTAGACTTTTCTGTATTTATTTCAAAGCCAACTCTTATTTTCCCCCCATTGGAGGCGGTGTGTTCCATGTACTGCCTGTTTGTTCACTATGTACATTTTTTGAGAGTCATGTTAAGAAATACTGTGCATAGTTGCAATGTATTTTATTCTCAGCACAAAATGTTTACGTCCAGAACCGCTTCAGCTCTCTAACTGTATGGTGTGGATAAATAAATGTAGTTGTTTGACTTAGCATGGCAAAAAAAAAACTCATGTGTACATAGTTGATGAGTTTATCCAATTATAAAACCTATTACTGTGTTTTCGGTATTGACTCTCCTTCAGCGTTCTAAATGTTTTAGTGAAAAGGTTGTAATATCAAGCCACAGTTTCAAAAAGATTGAAAACAAAGTAATAAACATAGCCAACACACAGCTATCACATTTATATGgtatatatttgatttatttattgattCTATTTTGTACGTTTGTGTTCGGTGACAATTTTGTCTCATACTGTTACTACTCTGTGCTGAAATATGATTTGAATCCCACAATACAGATATCTTTAAAATCTT

Function

NR:

description
R-spondin-2-like

GO: NA

KEGG:

id description
K23097 RSPO2; R-spondin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596144.2 True 2631 mRNA 0.47 6 32513177 32594495

Neighbor

gene id symbol gene type direction distance location
LOC110518458 NA coding downstream 53162 32299848 ~ 32460015 (-)
macf1b LOC106583729 coding downstream 216196 32254746 ~ 32296981 (-)
LOC110518433 ct054 coding downstream 266775 32241403 ~ 32246402 (-)
LOC110518398 NA coding downstream 508821 31914252 ~ 32004356 (-)
LOC110518371 LOC106583543 coding downstream 882070 31562384 ~ 31631107 (-)
if36 if36 coding upstream 2361 32596856 ~ 32638124 (-)
LOC110518723 tmm74 coding upstream 163198 32757693 ~ 32760895 (-)
LOC110518755 LOC106583774 coding upstream 411673 33006168 ~ 33013361 (-)
LOC110518858 LOC106583820 coding upstream 447178 33041673 ~ 33057433 (-)
LOC110518882 LOC106583857 coding upstream 683487 33277982 ~ 33284779 (-)
G247084 NA non-coding downstream 31516 32481305 ~ 32481661 (-)
G247079 NA non-coding downstream 38699 32474243 ~ 32474478 (-)
G247075 NA non-coding downstream 42006 32470895 ~ 32471171 (-)
G247072 NA non-coding downstream 44630 32467733 ~ 32468547 (-)
G247070 NA non-coding downstream 47931 32464993 ~ 32465246 (-)
G247332 emc2 non-coding upstream 101648 32696143 ~ 32697132 (-)
G247379 NA non-coding upstream 118012 32712507 ~ 32712707 (-)
G247400 NA non-coding upstream 131843 32726338 ~ 32726630 (-)
G247411 NA non-coding upstream 142545 32737040 ~ 32737682 (-)
G247413 NA non-coding upstream 144363 32738858 ~ 32739120 (-)
G245366 LOC106605077 other downstream 1567334 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 2295588 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 2313407 30199232 ~ 30199770 (-)
G244379 NA other downstream 2335769 30174013 ~ 30177408 (-)
G248239 LOC106605043 other upstream 824934 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 1762780 34357275 ~ 34359451 (-)
G249978 NA other upstream 2295011 34889506 ~ 34889954 (-)
G249990 NA other upstream 2301463 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 3545617 36140112 ~ 36144572 (-)

Expression


Co-expression Network