LOC110518706 (LOC106583752)


Basic Information

Item Value
gene id LOC110518706
gene name LOC106583752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32648411 ~ 32711431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973882.1
TATTGTCGAGCTTGTCGACTGATGGTCACTTGTGGTGACACTACTCGGTGCTCAAAAGGGTCAGCAGAGACAAACCACACCCAGTTCAATGACGTTAAACCTGTGCTGCCAAGAGCGATGGCGTCGGTGTCAGAAATGTACGACGTAACCTGGGAAGAAATGAGAGACAAGCTGCGGAAGTGGAGGGAGGATAACCACAGAAACAGTGAGCAAATCGTGGATGTTGGTGAAGAATTGATAAATGAGCATGCATCCAAACTTGGAGATGACATATGGATTATTTATGAGCAGGTGATGATAGCTGCGTTGGACTGCAGTCGGGATGATTTGGCTTGGACTTGTCTACAGGAACTGAAGAGGCAGTTTCCAGGTAGCCAACGAGTGAAGCGATTAGCAGGCATGCGGCTGGAGGCTTTGGAAAAGTACGAGGATGCCAGCAAGCAGTATGATTCAATACTGCAAGACGATCCCACCAATACGGCGGCGAGGAAGAGGAAGATCTCGATTCTGAAGGCCCAGGGGAAGAGCGCCGAGGCCATCCGCGAGCTCAACGAGTATCTGGAGCAgttcGTCGGGGACCAGGAAGCGTGGCACGAGTTGTCGGAACTCTACATCAACGAGCACGACTATGGAAAAGCAGCCTTCTGTCTGGAGGAGCTGATGATGACCAACCCTCACAATCACTTGTACTGTGAGCAGTACGCTGAGGTGAAGTACACCCAGGGGGGGCTGGAAAACCTGGAGCTGTCCAGAAAGTATTTTGCCCAGGCTCTGAAGCTGAACAACAGGAACATGAGGGCCTTGTTCGGTCTGTATATGTCGGCAAGCCACATTGCTGCCTGCCCCAAAGTGAATGCCACAGTGAAAAAGGCAAATGTGAAGTATGCTGCTTGGGCCACCAATCAAATCAACCGAGCCTATCAGCTGGCCGGTCGCGGGACGAAGGAGAACAAATGCTCCGTGAAGGCCGTGGAGGAGATGCTGGAGTCCATGCAGATCACCATGTCCTAGGCCCCCAACCCCCCGTTCTACATGGCTCAACAAGGCAGCTCTGTTGGCTCAATGCTGTGCACCCCTCAGACTcgaccaccacctcccctccctctgtttTTTGATGATTTAGAGCAGGTCTGTCctttatagtgcagtacttttaacCCAAGCCCTATCTAAGCAAATATAATGCACTATGTGAGATATAGGGTGACATTTGAGACGTAGGCCAGGTAGAGGATGCTCCCGCGTTGTCAGGGACTGAGATGTGAGTAGAGAAGAGGCTGTAATAAATACTAATATAAGGAGAGGGCTTAGACAGGTCCGTCTGTATGCAGCTAGGCCCTCCCAACATTTCCTTATGTCTgtaaatgaaagaaaaaaaatgaaaaaaataagccGTTTTTATCATAagtattgtttttttctctcagtCCATCCAGATGTCTTAATAAAGGCTTTAATTGTTTGCGGTCTGGAGCAAATTTTCTCATTTCA
>XM_036973883.1
TATTGTCGAGCTTGTCGACTGATGGTCACTTGTGGTGACACTACTCGGTGCTCAAAAGGGTCAGCAGAGACAAACCACACCCAGTTCAATGACGTTAAACCTGTGCTGCCAAGAGCGATGGCGTCGGTGTCAGAAATGTACGACGTAACCTGGGAAGAAATGAGAGACAAGCTGCGGAAGTGGAGGGAGGATAACCACAGAAACAGTGAGCAAATCGTGGATGTTGGTGAAGAATTGATAAATGAGCATGCATCCAAACTTGGAGATGACATATGGATTATTTATGAGCAGGTGATGATAGCTGCGTTGGACTGCAGTCGGGATGATTTGGCTTGGACTTGTCTACAGGAACTGAAGAGGCAGTTTCCAGGTAGCCAACGAGTGAAGCGATTAGCAGGCATGCGGCTGGAGGCTTTGGAAAAGTACGAGGATGCCAGCAAGCAGTATGATTCAATACTGCAAGACGATCCCACCAATACGGCGGCGAGGAAGAGGAAGATCTCGATTCTGAAGGCCCAGGGGAAGAGCGCCGAGGCCATCCGCGAGCTCAACGAGTATCTGGAGCAgttcGTCGGGGACCAGGAAGCGTGGCACGAGTTGTCGGAACTCTACATCAACGAGCACGACTATGGAAAAGCAGCCTTCTGTCTGGAGGAGCTGATGATGACCAACCCTCACAATCACTTGTACTGTGAGCAGTACGCTGAGGTGAAGTACACCCAGGGGGGGCTGGAAAACCTGGAGCTGTCCAGAAAGTATTTTGCCCAGGCTCTGAAGCTGAACAACAGGAACATGAGGGCCTTGTTCGGTCTGTATATGCTGGCCGGTCGCGGGACGAAGGAGAACAAATGCTCCGTGAAGGCCGTGGAGGAGATGCTGGAGTCCATGCAGATCACCATGTCCTAGGCCCCCAACCCCCCGTTCTACATGGCTCAACAAGGCAGCTCTGTTGGCTCAATGCTGTGCACCCCTCAGACTcgaccaccacctcccctccctctgtttTTTGATGATTTAGAGCAGGTCTGTCctttatagtgcagtacttttaacCCAAGCCCTATCTAAGCAAATATAATGCACTATGTGAGATATAGGGTGACATTTGAGACGTAGGCCAGGTAGAGGATGCTCCCGCGTTGTCAGGGACTGAGATGTGAGTAGAGAAGAGGCTGTAATAAATACTAATATAAGGAGAGGGCTTAGACAGGTCCGTCTGTATGCAGCTAGGCCCTCCCAACATTTCCTTATGTCTgtaaatgaaagaaaaaaaatgaaaaaaataagccGTTTTTATCATAagtattgtttttttctctcagtCCATCCAGATGTCTTAATAAAGGCTTTAATTGTTTGCGGTCTGGAGCAAATTTTCTCATTTCA

Function

NR:

description
ER membrane protein complex subunit 2 isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23563 EMC2, TTC35; ER membrane protein complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973882.1 False 1491 mRNA 0.49 11 32648411 32711431
XM_036973883.1 True 1386 mRNA 0.49 10 32648411 32711431

Neighbor

gene id symbol gene type direction distance location
LOC110518684 LOC106583734 coding upstream 376706 32268649 ~ 32271705 (+)
LOC110518416 LOC106583607 coding upstream 418694 32150619 ~ 32229717 (+)
LOC110518407 LOC106583590 coding upstream 623869 32007036 ~ 32024542 (+)
LOC110518390 LOC106583575 coding upstream 987791 31650612 ~ 31660620 (+)
LOC110518348 LOC106583530 coding upstream 1089828 31473284 ~ 31558583 (+)
LOC110518733 LOC106583759 coding downstream 59644 32771075 ~ 32777409 (+)
LOC110518743 eny2 coding downstream 139478 32850909 ~ 32852805 (+)
LOC110518767 NA coding downstream 307980 33019411 ~ 33035356 (+)
LOC110518846 LOC106583830 coding downstream 346465 33057896 ~ 33068611 (+)
LOC110518871 LOC100194712 coding downstream 375078 33086509 ~ 33172715 (+)
G247131 LOC106605059 non-coding upstream 10223 32596856 ~ 32638188 (+)
G247160 NA non-coding upstream 52528 32595455 ~ 32595883 (+)
G246858 NA non-coding upstream 165713 32482313 ~ 32482698 (+)
G246857 NA non-coding upstream 166578 32481439 ~ 32481833 (+)
G246853 NA non-coding upstream 171462 32476697 ~ 32476949 (+)
G247381 NA non-coding downstream 2058 32713489 ~ 32713732 (+)
G247392 NA non-coding downstream 10101 32721532 ~ 32721797 (+)
G247393 NA non-coding downstream 10596 32722027 ~ 32722293 (+)
G247402 NA non-coding downstream 17254 32728685 ~ 32728972 (+)
G246282 NA other upstream 789092 31852668 ~ 31859319 (+)
G245930 NA other upstream 967771 31669958 ~ 31680640 (+)
G245799 NA other upstream 1023368 31492207 ~ 31641357 (+)
G244991 NA other upstream 1561156 31086769 ~ 31087255 (+)
G244956 NA other upstream 1611159 31036517 ~ 31037252 (+)
G248134 NA other downstream 712358 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 1116789 33828220 ~ 33835275 (+)
G248794 NA other downstream 1263045 33974476 ~ 33977835 (+)
G248795 NA other downstream 1294727 34006158 ~ 34013057 (+)

Expression


Co-expression Network