LOC110518733 (LOC106583759)


Basic Information

Item Value
gene id LOC110518733
gene name LOC106583759
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32771075 ~ 32777409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596172.2
AAACGCTGTTTGGAGCTCTGTGCGTAATGAGAAGGCTGTCTTAGACTGGAGCAGCGCACGACATGTCACACCTCTTTACTTTACCTCTTTGCTTATACTGTCAGTTTGCCTAACTTCGTGTCTAAAGAGGACTAAAACATGGGTAAACAACACCAACATCCAAACCTGGTCTTCGTATTCATCGAATATATTTTGCTCGATTTTATATGATATATCGCTTTCATAACCTCATGAAatgatttacattttattttggatAAGTAATACAAAAAACTTTATTGAATAATGACTTCGTTTTGGaactaatatttttttttaatggagcTCTCGAGGCTATTTTAAATGTAAAGTCTATGTCTGAAATGAATTACTCCTCCAAGTGAAGTGTACAGAACTAAACCATGGAAAATGTTACTTCATATCCAGATAACCAGACGCTTGGTCCATGGACTGATTATAGCATGGAATACAAAGTGGTCAGCATATTTTTTGTGATCCTCATCTGTGGGATAGGAATAGTTGGAAACGTTATGGTGATACTAGTTGTTCTTACAACCAAACACATGCGGACACCCACCAACTGTTACCTGGTGAGTTTGGCGGTGGCCGACCTGATGGTTCTGACTGCGGCGGGACTGCCGAATATTACAGAGAGTTTGTATGGAGGAGGCTGGGTGTACGGATACGTCGGGTGCCTTAGCATAACTTATTTCCAGTACTTGGGCATCAACGCGTCTTCATGCTCCATCTCCGCTTTCACCATTGAGCGGTACATAGCCATCTGCCACCCCATAAAAGCGCAGTTTATGTGCACTCTGTCAAGAGCAAAGAAAATCATAGTGGTCGTTTGGGCTTTTACCTCGCTCTACTGCGCCTTGTGGTTTTATCTGTCTGACACGAAAGAGTTGATTTACGACAATATTACCTTGGTCTCATGCGAATACAAAGTGTCAAGAAATCTTTACCTGCCAATCTACTTCACTGACTTTGCAGTGTTCTATGTGGTGCCTCTCATGCTAGCCACTGTTCTGTATGGATTTATCGCTAGAATTCTTTTCCTCAACCCATTGCCGGCAGACCCCAAGGAAAATACTAAAAAGTGGAAAAAAGAATCATGCCAAGGAAATAGGATGATGAGCACCAACAATTCATCCTGTAGCACAACTGCCCGATCTCGCAGGCAGGTGACTAAGATGTTAGCTGTGGTGGTGGTGCTCTTTGCCCTCCTCTGGATGCCCTACCGGACGCTGGTGGTGGTAAACTCCTTCCTGGACAAGGCTTACCTGGACCTCTGGTTCCTACTCTTCTGCCGCATCTGCATCTACCTGAACAGTGCCGTCAACCCGGTCATCTACAACGCCATGTCTCAGAAGTTCCGCACCTCCTTCAAGAAGTTGTGTCACTGCGGTCCGCAGCGATTGGAGAAGCCGGCGTCTTACAGCGCGGCCCTGACCTACAGCGTCATCAAGGACACAACCAATGGAGAGAGCCCTGACCACTTTACTACCGAGATGGACGAGTTGGCCACGCCCACACCCAGTGACCAGTTCCTGCCCAGCACCAAGAGGATGTCATTCGAGGACCCCTCTCTGTCATGCAGGGTTGCCCTTAGCACTCCCTGACAGAAAAAGTAAATCCATTCAGGCTCTAGTTTGTGAATTCTATTCTATAATTCATTTTCTGCAGAGGAATTGCTCTAATATTTCAGCAGTACAACGGCAAACATTAAATACCAAAAATGTGTTGTTAATAGAGGAAGGAATGCTTAATTTCTTTATCTAGCATGGTGAAAATAtattctcccctctctgtagCCATCTTAGCACAAAGCACCCAATTATAGGCATTGTTTAAATCAGTCTTAAACATTGTGTGACACACAGATTTAATTTTCCAGGTAATACTGCTTTCACTGCTTTCACATACTGAGCGACAGTTTCCATCTCTGTAGAGTGGAAAAAAGGGAAAGATATTATCCCTCTTTTTTTATCTGGAGAAGTCTAGGCCAggtactcagtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttaaaaGTTCACTCTACAGGAGGAGTCAAACTGTCTGGCCATAGTTGTTTGAACCATCCTGCTACTTTGCATGTTTGAAAACAGCATAGAGAGAATGTGATCACTGACCACATTTCAAAGGCAAAATTCAAAGGAGGCAGAGTATTAAAACCATCTCTGCTCGAGGAGTGTAAATATCACACATTGCTTTGAAACCCGCCTGTCAGGGAAATAGAGATGAGGTGCGATGAAATTTCTTTAAAGGTTACAGATGATGAAAAGGACTGAGAGCAAAGCAATGCCACTCCAGGTCTTTCATCCGTTTGATTGCTCAATGTCATTTGACTTTGTTGTAACCTTATTGGTTACTATAAATCAGGCTCACCTGATATGGAACGTTCTGCAGGGGCTAGTGTCAAAAATGTATAGTAACCTTATGGCTAAAAGGTTCACCTGATATAGAACTTTCCACAGGGGCTAGTGTCAAAAAAATGGAGCATGGTTAAACATCCTGCTGTCCCCATAATGGACTACTGTGGTGTGGATTCAATCAAAAAGAGTTGAAAGGCCCAGAGTTCATAATGAGAAAGTTATTTGATGACTCAGACACCTGGGTGGTTGATTGGTTGTCTCTAGGTCAGGGGCCTGACATGACCAGACCAAACATTAAGTTGACATCCGCAAAAGCAGAGACTGATGGTAGCATTTCCCCCCAAGCACATCCCACAGAGCagctattcccaaactggggtacgcccaatgccgtcgggggtacgccaaataaaaaggTGATTCACAttgaagaaaaaagaaaaaaaaatcttcacattttcaaacagtccatttatattttcca
>TU282359
CTTAGCATAACTTATTTCCAGTACTTGGGCATCAACGCGTCTTCATGCTCCATCTCCGCTTTCACCATTGAGCGGTACATAGCCATCTGCCACCCCATAAAAGCGCAGTTTATGTGCACTCTGTCAAGAGCAAAGAAAATCATAGTGGTCGTTTGGGCTTTTACCTCGCTCTACTGCGCCTTGTGGTTTTATCTGTCTGACACGAAAGAGTTGATTTACGACAATATTACCTTGGTCTCATGCGAATACAAAGTGTCAAGAAATCTTTACCTGCCAATCTACTTCACTGACTTTGCAGTGTTCTATGTGGTGCCTCTCATGCTAGCCACTGTTCTGTATGGATTTATCGCTAGAATTCTTTTCCTCAACCCATTGCCGGCAGACCCCAAGGAAAATACTAAAAAGTGGAAAAAAGAATCATGCCAAGGAAATAGGATGATGAGCACCAACAATTCATCCTGTAGCACAACTGCCCGATCTCGCAGGCAGGTGACTAAGATGTTAGCTGTGGTGGTGGTGCTCTTTGCCCTCCTCTGGATGCCCTACCGGACGCTGGTGGTGGTAAACTCCTTCCTGGACAAGGCTTACCTGGACCTCTGGTTCCTACTCTTCTGCCGCATCTGCATCTACCTGAACAGTGCC
>TU282358
ACCTACAGCGTCATCAAGGACACAACCAATGGAGAGAGCCCTGACCACTTTACTACCGAGATGGACGAGTTGGCCACGCCCACACCCAGTGACCAGTTCCTGCCCAGCACCAAGAGGATGTCATTCGAGGACCCCTCTCTGTCATGCAGGGTTGCCCTTAGCACTCCCTGACAGAAAAAGTAAATCCATTCAGGCTCTAGTTTGTGAATTCTATTCTATAATTCATTTTCTGCAGAGGAATTGCTCTAATATTTCAGCAGTACAACGGCAAACATTAAATACCAAAAATGTGTTGTTAATAGAGGAAGGAATGCTTAATTTCTTTATCTAGCATGGTGAAAATAtattctcccctctctgtagCCATCTTAGCACAAAGCACCCAATTATAGGCATTGTTTAAATCAGTCTTAAACATTGTGTGACACACAGATTTAATTTTCCAGGTAATACTGCTTTCACTGCTTTCACATACTGAGCGACAGTTTCCATCTCTGTAGAGTGGAAAAAAGGGAAAGATATTATCCCTCTTTTTTTATCTGGAGAAGTCTAGGCCAggtactcagtgtgtgtgtgtgtgtgtgtgtgtctgtc

Function

NR:

description
thyrotropin-releasing hormone receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596172.2 False 2959 mRNA 0.43 2 32771075 32777409
TU282359 False 642 TUCP 0.47 2 32771770 32775787
TU282358 True 594 lncRNA 0.42 1 32775902 32776495

Neighbor

gene id symbol gene type direction distance location
LOC110518706 LOC106583752 coding upstream 59644 32648411 ~ 32711431 (+)
LOC110518684 LOC106583734 coding upstream 499370 32268649 ~ 32271705 (+)
LOC110518416 LOC106583607 coding upstream 541358 32150619 ~ 32229717 (+)
LOC110518407 LOC106583590 coding upstream 746533 32007036 ~ 32024542 (+)
LOC110518390 LOC106583575 coding upstream 1110455 31650612 ~ 31660620 (+)
LOC110518743 eny2 coding downstream 73500 32850909 ~ 32852805 (+)
LOC110518767 NA coding downstream 242002 33019411 ~ 33035356 (+)
LOC110518846 LOC106583830 coding downstream 280487 33057896 ~ 33068611 (+)
LOC110518871 LOC100194712 coding downstream 309100 33086509 ~ 33172715 (+)
tpbgb LOC106583879 coding downstream 563958 33341367 ~ 33344522 (+)
G247402 NA non-coding upstream 42103 32728685 ~ 32728972 (+)
G247393 NA non-coding upstream 48782 32722027 ~ 32722293 (+)
G247392 NA non-coding upstream 49278 32721532 ~ 32721797 (+)
G247381 NA non-coding upstream 57343 32713489 ~ 32713732 (+)
G247131 LOC106605059 non-coding upstream 132887 32596856 ~ 32638188 (+)
G247453 NA non-coding downstream 2124 32779533 ~ 32780725 (+)
G247481 NA non-coding downstream 15925 32793334 ~ 32793537 (+)
G247541 NA non-coding downstream 58022 32835431 ~ 32835630 (+)
G247574 NA non-coding downstream 105507 32882916 ~ 32883137 (+)
G247580 NA non-coding downstream 114784 32892193 ~ 32892437 (+)
G246282 NA other upstream 911756 31852668 ~ 31859319 (+)
G245930 NA other upstream 1090435 31669958 ~ 31680640 (+)
G245799 NA other upstream 1146032 31492207 ~ 31641357 (+)
G244991 NA other upstream 1683820 31086769 ~ 31087255 (+)
G244956 NA other upstream 1733823 31036517 ~ 31037252 (+)
G248134 NA other downstream 646380 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 1050811 33828220 ~ 33835275 (+)
G248794 NA other downstream 1197067 33974476 ~ 33977835 (+)
G248795 NA other downstream 1228749 34006158 ~ 34013057 (+)
G249245 NA other downstream 1525163 34302572 ~ 34302907 (+)
LOC110518733 LOC106583759 other upstream 115 32771075 ~ 32777409 (+)
LOC110518266 LOC106583495 other upstream 1645503 30939321 ~ 31127608 (+)

Expression


Co-expression Network