LOC110518858 (LOC106583820)


Basic Information

Item Value
gene id LOC110518858
gene name LOC106583820
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33041673 ~ 33057433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596247.2
CTACCATAGCCCAGAGATACTTAGTGTGCCTCTTGCCCCGGCTTTGGTTCCACATCCTCTCCCCAGTTTCAAGATGGCAGCCATGAGGCTATGAAGAAGCGACAAATATTGATGGAATAAATAATGAGAACGGATGCTAGGTAGCAGCTGTTAGACACATACGCTTGTGATATGACTGGTGTCATTATTGCAAGTGTGTTGTTTCGAGAGTGAAATTTACAAGGAAAAATACGTTGCATATCGGTATGCTATTTTGCTAAGTTagcgctagctagctaaacacatGAATTCTGGGGACGGCCACATCTGATTCGCCAGCTGTCAGCTAAGCAAGTATATTGAGCTGTACGCTCAGCTTCACCATGGCCATCTCTCAGTTTCGCCTTTTCAAGATTTGCACATGGCTTGCAACCTTCCTTTCATTCTTCAAAAGGTTAATATGCAGATCTGGGAGGTTGCGTAAGCTAAGTGGGGATCAGATATCTCTTCCAACGACGGTTGATTTTTCATCAGTACCCAAACCGGCAGAGATTGAAGAATGGAGCTCGTGGGATGAAGATGGTCCCACAAGTATCAAGATCGAGGGCGGTAATGGCAATGTGCCACCACAGCCTGGCGAGGAAGTGGAACCAGACTACTTCAAAGACATGGCTCCCACCATCAGGAAAACACAGAAAATTGTACTGAAGAAGAGGGAGCCACTCAACTACTTGGTACCCGATGGCAGTGCGGGCTTCTCCAGCAGACTGGCAGCCACTCAGGACACCTCCTTCATTCAGCCATCTTCTGAGCTTGGAGACATGGATACCTGGCATGAGGACGCCAACGCCTGGGAGGATGAGTCGTCAGATGCTGCCTGGGAGGCCGATTTGGTGCTCAGACAACAGAAGATGGCTGAGAGAGAAAAGCGTTCCATGGAGCAGCAGAGGAAGAAGATGGAGAAGGAGGTTCAAAGGATGATGAAGAAGGACCAGAAGATTGCGGTCAAGCTCTCGTAACATTTTTTTAGAGCACTCACCCCGTGAGCCGGAGGGCAAGAAAAGGAACACTTAGACAAACGTCATCACGCTATCCTCTAGTCATCTCCACACGAAGATCATCTCTACTCCACACAgcggtcatttaaaaaaaatctctgtCCACCAGCCATCATTCGAGATATGGCTTGGCCAGTGTGATGTTTGTTCAAAGACGGTTGCATTTAGCTTTCGGAAAGGCACGGCATGCCTGggatgtgttcattagggcacgcaacGGAAATGAGCGTTTTTTTATCTAACAAGTTCAGGAAGTCACCCCCtgtatcagttttttttttttttttttgcgccgAATGAACACTACCctgatttacagttgaagtcggaagtttacatacaccttagtcaaatacatttaaactcaggctttcacaattcctgacatttaa

Function

NR:

description
receptor-binding cancer antigen expressed on SiSo cells-like

GO: NA

KEGG:

id description
K22455 EBAG9; estrogen receptor-binding fragment-associated gene 9 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596247.2 True 1429 mRNA 0.47 7 33041673 33057433

Neighbor

gene id symbol gene type direction distance location
LOC110518755 LOC106583774 coding downstream 28312 33006168 ~ 33013361 (-)
LOC110518723 tmm74 coding downstream 280778 32757693 ~ 32760895 (-)
if36 if36 coding downstream 403549 32596856 ~ 32638124 (-)
LOC110518696 LOC106583742 coding downstream 447178 32513177 ~ 32594495 (-)
LOC110518458 NA coding downstream 581658 32299848 ~ 32460015 (-)
LOC110518882 LOC106583857 coding upstream 220549 33277982 ~ 33284779 (-)
LOC118964365 NA coding upstream 228779 33286212 ~ 33286264 (-)
LOC110518895 LOC106583864 coding upstream 243682 33301115 ~ 33337241 (-)
ube3d ube3d coding upstream 325547 33382980 ~ 33401872 (-)
prss35 LOC106583947 coding upstream 450161 33507594 ~ 33513383 (-)
G247847 NA non-coding downstream 5173 33036200 ~ 33036500 (-)
G247789 NA non-coding downstream 15957 32932227 ~ 33025716 (-)
G247787 NA non-coding downstream 20052 33019586 ~ 33021621 (-)
G247795 NA non-coding downstream 49238 32977539 ~ 32992435 (-)
G247657 NA non-coding downstream 110173 32931275 ~ 32931500 (-)
G247868 LOC106583830 non-coding upstream 8411 33065844 ~ 33067704 (-)
G247994 NA non-coding upstream 154047 33211480 ~ 33211791 (-)
G248152 NA non-coding upstream 189948 33247381 ~ 33247876 (-)
G248189 NA non-coding upstream 289022 33346455 ~ 33346655 (-)
G248190 NA non-coding upstream 289535 33346968 ~ 33347313 (-)
LOC110518371 LOC106583543 other downstream 1460471 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 2095830 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 2824084 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 2841903 30199232 ~ 30199770 (-)
G244379 NA other downstream 2864265 30174013 ~ 30177408 (-)
G248239 LOC106605043 other upstream 361996 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 1299842 34357275 ~ 34359451 (-)
G249978 NA other upstream 1832073 34889506 ~ 34889954 (-)
G249990 NA other upstream 1838525 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 3082679 36140112 ~ 36144572 (-)

Expression


Co-expression Network