LOC110518882 (LOC106583857)


Basic Information

Item Value
gene id LOC110518882
gene name LOC106583857
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33277982 ~ 33284779 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596260.2
ttacaccactgctcacaATATGTTGTTGCTGGATATTTTTCAAATGACTCAGATTTGGTTGGGATTGTACTCCAACTTTTTCCTCTTTCCCATAGAGGGCGGTATGGCAATGTCAACTCAAAGTAGGCTTTTGCTCCACAATTTCTGTATGGTCTATGAAATCCTGCAAGTCAAAATAACAACTCTTTATAGTGAAAACCTTACATCTCCTATAAATTACGACTTAAAACAATGTGATTTCCACTCAAAGGAGGACACATTAGGCTATTATATTTTTAATTAACGGTGCTTGCATTTCACAAGAGACTATATAAAATTACAGTTCTGTTTGTGTATATAAATGACCTATATCAATATGGTCACGGCTGTAGTAACATAGCAAGCGTAGAAAGACGCCTGTGCGGTGTCCCTCAAGTTAGGTTAAATTCTGTATACCTGAAAACCGGCACCTTTTTGCCAACGCCGCTATATTGCGGCTGTAGTAAGAAGTCAGATTTGCTATTGGTGAGCACAGATTTCGCTGTaactttattttttatgtttatggcacctggtattcccaggtggTCTCCGGTCCCAGTACTAACCAGGCCGATGGTATGGCCACAatagtatatattttttctcccCGAATTAGGTCTCATCTCTGCAACTATTCAATGGgatcgggagaggtgaaggtcgagtcatgtgtcctccgaaaacATGACCCTCCTGGCCGCCTACCTCTGCTCAACACTGCTCGCTTAAACCGGATGttagccacaccaatgtgtcggaggagcCAAGGCAATGACCATCCCCTACCGCGGACGGCGCTGGGCCAGTTGTCCGCaaaacctgggatcaaaccccaGGCTGTTGACGTCGCTCAAACTTATCTTCGTTCAAATGATAAGGGGTTGTACATATCATGTGACATTCCTAAAACTGTACCTGCCTTTCAACGAGAAGCAACGCCCACAAGCCAAGCACAATGGACAGGTAACGGTTAACTTTGATGGAAAACAAAAGTAGCCAAACTAAACCACATCCGTTTCACGTGACATGGAAGGCTTTAAGAATTTATTGGAGACGAAAAGGGATCCAAATATTTAGAAGTTGCGCGTCACAATCCACGGGGATTCCACAGAGGGCTGATCACTGCAGAACTGCGTATTCATGCAAATTCAATAAATCATAGGCGGGCCTTAGGCGATGGAGTCACAGCCCGAACACAGAACTCCTGGTATACCAACGAGCACCAAAGACGGCGATGCGCACAGCTCGGATACACTGAGTGATAACCGATGAGGAAACGTTTCACGCCCTTTAAAGAAAGGAAAAAGGCAGAAGTGACGACTATCTTTGAGAGAAGATCTTATTCACTGTCCTCCCTTATCTCACGACAAAAGACGCGCGAGTCAACCGGAGTACGCAGCTGTCATTTCTTTACTGCGCATTGAGTAGCCTAGCCTATTTCGCCTTGATTTGATTTATGCTACAGTATAATATAGAGGagatactgcactctgactgaaGATACCGATGTGGATGAAGTTGACATTGCCCCTCTATAGCCTACTGTCACTGCGCGTAAAATCCACATTTGGATACGGACCTGTCGCTAAAGAAACTTCATAGTCAATTGCCGTTTAATTTTCTCCACAATGTCCGAAGAAGATAACAGCTGCACTGGTGCTAGTACTATAGCTGAGGTTGAAAGCAGCAATATCAGCGTTCTCGGCTGGGAACAAGTGCAGCGCCTTGATGCCATCCTGACGGAGACCATTCCCATCCACGGCCGGGGAAACTTCCCCACTTTGGAGATGAAACCCCGACAAATAGTGAAAGTGGTGCGTAGTCGCATGGAGGAGAGGAATATCCACGTCCGGGACGTGCGGCTTAACGGGTCTGCTGCAAGCCACGTTCTTCACGAGGATAGCGGACTGGGCTACAAGGACCTTGACCTAATCTTTTGCGCGGATATGAAAGGGGAAAGTGATTTTCAGATTGTGAAGGATATCGTTTTGGACTGTCTCCTGGACTTCTTACCTGACGGGGTGAATAAGCAAAAAATATCACCATTGACTTTAAAGGAAGCCTATGTGCAGAAGATGGTGAAGGTGTGCAATGATTCAGACCACTGGagcctcatctccctctccaatAACAGAGGCAAGAACGTGGAGCTCAAGTTCGTAGACTCTCTGAGGCGGCAGTTTGAGTTTAGCGTGGACTCCTTCCAGATCAAGCTGGACTCCCTGCTGCTATTCTATGAATGCTCTGAGAACCCCATGGCCGAGACCTTCCATCCCACCATCGTGGGTGAGAGTGTGTTTGGGGACTTTGGTGCTGCCCTCGACCACCTACGCCAGAAGGTGATCTGCACCCGCAACCCAGAGGAGATCCGGGGCGGCGGCCTGCTCAAGTACTGTCACCTGCTGGTAAGGGGCTTTCACGCCGACTCCGAGACGGAGATGAAGTCCCTGCAGCGTTACATGTGCTCACGCTTCTTCATCGACTTCTCGGATATCAGCGAGCAGCAGCGCAAGCTGGAGTCCTACCTGCAAAACCACTTTGTGGGCCTGGAAGACCGCAAGTACGACTACTTGATGACCCTGCATGGGGTGGTCAACGAGAGTACGGTGTGCTTGATGGGACATGAGAGGCGGCAGACACTGGGGCTGATCGCCATGCTGGCGGTGCGCGTGCTGGCCGAGCAGAACTTCATCCCGAACGTGGCTAACGTCACCTGCTACTACCAGCCAGCCGCCTACGTGGCAGACGGTAACTTCAGTAACTACTACATAGCCCAGGTACAGCCCATGTTCCACTGCCAGCGGCATGCCTACTCCACCTGGCTACCCTGCAACTGAGACAGCACACGGggaggaaggagtgagagagaaagagggaggggagagtctGATTCATTTATCACTGTAAAGTGTTTTTCAGATGAATGAATGAGAAAAGGGTATCCCCATGCCCCACCATCCTGTATTGCATTTAAATGTGTTGTTATGTTTTGTTAGAGTGtgatgctgggggggggggggaataacagCTGGGTCTCAGCTCCTGTGAGGTCCATCTTAAACCAATGGCAGGACAGTTTACTGTGAAAATGCCACCCTGTCTGACACACAACCCAAGCTTGGGAAGTATGGGATGGGGTTTTGCCCAATACAATGCAAACAACGATGGACAAGAGTGAAAGCCGCAACAATACTTTCATTGACCCTGACCTGGATTGACTGACTCTGTTGCGAACTGAAAATGCTGTGGAATTGAGCGACAGACGGAACATAATGTGTGGCTGCATCTGTGTCCTGTGGTGTCCAGCTGCCTCCTTGGCCGTGAGGAGGATGCAGGCCCCTTTGCTCTCTTAAGGGGTGTGCGGCTTGCACCCTGACGCGCGCTGGGCCATGTCCCAGCAACACAGGGGTTACTAGAGCACCATAAAACTCTCTTTATTTCTGGTGAGGTGAGATGTCATCACGAGCTTGGAATGACAGAAACTACACCTTAACTAGTAATGACTGATATGAACATGATGATGTGTTTACAAACCAAAGATTTTTCATTTATTGTTTTTAATACCCACGTTTGGTGGGGAAGAAAACAAATGTATAATGCGATCTATATTTGTATATGTGAACGTGTTTTAAGTGCCTAACGCCTATCAGTAGTATAGGCAGAGGAATAATGAGCAGTAGGCCATATCGTTTTGTGAATAAATCCAGTCTGGTTTTTGTCAGGCACACAAGACAATAGCACCCCAGAGGCTTGTGAATGTGACCGTAAAATCCCGATTCAAATCCTGATACAGTCCGTGTTGTCATATTTTTTTGGAAGAAAACAACATATCCCCTTGCAGTCAGAGTATTAGTcgatgggggagagatggggtgTTACTGTACTTTGTACAAAGTAGTTTGACAGGTTGATACAGAACCTTGCATTAACATTTGCAGATATTTTAACCATTCCAGCTCCAATGAATAATAACAGCACCTCCCCATAGGTGCGTTGAAGCCACAGAGACGAGAGCGTTGTTTGCTGTTGCTCTCCCATAGTCATTTTCAGACAAACTCCACGGGAATATTAGTTTGTGCCGAGGTGGTTTAATGTTGTTTTGTCGTTGTTCACGTTGACCGCTTTGGTGAGCTTTTCAGATATCCGCGTTAAAAGAAAGGCAACATCCTGTAGTTTTCAGTTTCATAAGGATTACTGTATATTCAGTTTCACATGGTTTTAAACTTTACTGTATTTTGTATTGGGGTGCTTCTCTTTTAATTCATCTTTTTGTAGCAAGTTCACAGCAGGCTGAGGGAATGAAAAACCTGTGTCGGGAAGAAATAGATGCATAAGGAAAGAGAGACCGATCGGATCAAAGGGCAAAGAGGCAAGTCGGGGTGTTCCTGTGCTGCCTTCTAGTATGATATTTGCTGAGACACCTGTGATGGGACATTATTTGCTGTAACACTCTAGCAGGGAAGTACGCAGCTGCCAAAGAGGTTGAACTTATCTGGGCTGTGTCTGCAGTGTATTGCGCTCGCTTTGGGTGGGCTCAAACCTACCAGCAAATGTTGTGTCAAATGTTTATCTGCCGCTTGCCCAATGTTGAATGAGTGTTCGGCCTTTTGTCGATGGCGAGAGAGGTTGAGGACGTGTTGTTTTTAATATCGAAGTACAGATACTGAGCTGTAGGGGGAGGGACAGACGCTCTAGGGACAGAAGTAAAATGCGAGAGGCACGAAGCTGGGCTGGGGAGATGGGTGCAGCTGGTGAAGGGGTTTGTCTTGCTTTCACCACAGACCGACATACAGACAGATATACCGTGGTAAAACCTCTTTCTCCCATCTTAAGATGACCTAAGCAGAGAGAATAGgcaggggggggggagagagagaggggtcctgGTACACACAGCACAACTTTAGGGAGGTAGTCTATTAAGCCTAGTTTGACCTCTTATGTCAAGGGGCCTCTTCTTCTCTGGGGACTCTGATATCCTCGCATGCCTTATGAGCTTTGATAACGTTTCCTGGGTTGGTGCACTGCCATGGTATTACTGTAAAtaaccttctttttttttaaatgaggctAGGTTAGGCAGTGGTTGCATGATCTAACTGCTACGCTGTAAGGTCCGAGCCCATGGGGAAATACTGTCTGATGCTAATTCAGTTTCTCTAATGCCATCTCTCAAACATAACATCTGAAATATGTTCCTCAGCTGATAGGAATAGATTTTTGACACGAAGAGGAAAATGAACGATGATTCATCACCAATATTGTGGGTCTTGGGGTGAGAGACAGTGTTATTAAAAATAGCAACATTGTTGTGCACTATACAAATCTAAAGTATGTATCTTTAGAGAAGAATAAACAGTGTTTTCCCTTTGGGTGGGATTCCTGGGCTTCCCGCTTCTGTACAAATGGGTCATGTCACAACTCTTTAGGGCGTCTTAAGGAAACTACTCTCTTTGTCTCCACTGATGAGATCTTactcttgtcctctctcctctcccctcactcccatAATGTGCAAGTAGTAATGCAGCCCCCTTAGGGAGAAAGTGAATGGACATTAATGGAGTTCTACAGGGCGGAGGCACTCCAAAGGGGATGTGAAACGACTTCGGTGACCACTGTGTGACTGTAACCTGGGTGGtcaagagaacagagagaaatgCACTCGACTCAAATCATTCTGTACTCCTTTTTCCCTATTTTGCTATTTCACACATTCTGTTCAAACATCTTTCTTTTTGACTGTGTACATTTTGATGATATCGTCTGGATCGTGCAGGCGGTGTGTATTCCCATCTCTTCTCACTCTGtgaaattggctcagaacagttAAGCCAGCACCAGTCTACCATGTAGTTGGCCAGCAACACACAGGCTACTATGGTCTTGTATGCATTGTTTCAACTTGTCACCTCCTATTCATGCAGTCTTTATCCATCAAACCAACAAAAATAGAAAAAGAGCCTGCCTCGTATTTTTTTATGATTGTTATTTTTTATAACTGTATCAGACCATGTTGCAGCGCTTTGGAGTCTGTGATCAGTTTGCAAAATATCATTTCTcagcttacatttttttttccaGATCTTGTTAATGCCTGTTTTGAAGATAAAGGATGTTttcatcattaaaaaaaaaaatgaaaaccaaA

Function

NR:

description
protein FAM46A-like

GO: NA

KEGG:

id description
K23033 TENT5A_B, FAM46A_B; terminal nucleotidyltransferase 5A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596260.2 True 6172 mRNA 0.46 2 33277982 33284779

Neighbor

gene id symbol gene type direction distance location
LOC110518858 LOC106583820 coding downstream 220549 33041673 ~ 33057433 (-)
LOC110518755 LOC106583774 coding downstream 264621 33006168 ~ 33013361 (-)
LOC110518723 tmm74 coding downstream 517087 32757693 ~ 32760895 (-)
if36 if36 coding downstream 639858 32596856 ~ 32638124 (-)
LOC110518696 LOC106583742 coding downstream 683487 32513177 ~ 32594495 (-)
LOC118964365 NA coding upstream 1433 33286212 ~ 33286264 (-)
LOC110518895 LOC106583864 coding upstream 16336 33301115 ~ 33337241 (-)
ube3d ube3d coding upstream 98201 33382980 ~ 33401872 (-)
prss35 LOC106583947 coding upstream 222815 33507594 ~ 33513383 (-)
prdm13 LOC106583971 coding upstream 525866 33810645 ~ 33818250 (-)
G248152 NA non-coding downstream 30106 33247381 ~ 33247876 (-)
G247994 NA non-coding downstream 66191 33211480 ~ 33211791 (-)
G247868 LOC106583830 non-coding downstream 210278 33065844 ~ 33067704 (-)
G247855 NA non-coding downstream 229389 33047635 ~ 33048593 (-)
G247847 NA non-coding downstream 241482 33036200 ~ 33036500 (-)
G248189 NA non-coding upstream 61676 33346455 ~ 33346655 (-)
G248190 NA non-coding upstream 62189 33346968 ~ 33347313 (-)
G248210 NA non-coding upstream 93230 33378009 ~ 33378300 (-)
G248213 NA non-coding upstream 96764 33381543 ~ 33381745 (-)
G248215 NA non-coding upstream 117166 33401945 ~ 33402258 (-)
LOC110518371 LOC106583543 other downstream 1696780 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 2332139 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 3060393 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 3078212 30199232 ~ 30199770 (-)
G244379 NA other downstream 3100574 30174013 ~ 30177408 (-)
G248239 LOC106605043 other upstream 134650 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 1072496 34357275 ~ 34359451 (-)
G249978 NA other upstream 1604727 34889506 ~ 34889954 (-)
G249990 NA other upstream 1611179 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 2855333 36140112 ~ 36144572 (-)

Expression


Co-expression Network