ube3d (ube3d)


Basic Information

Item Value
gene id ube3d
gene name ube3d
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33382980 ~ 33401872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973905.1
GGCGGTAGAAAGGTTCCGGCTCGTGTTGATAGCTAGTGAAATATATGCCGTAGAAGTCTTTGCTGTTTTAAATTTATAGGCTGATGATTTGTATTGCTACATTTGCTTTAATTCGCCATACTGACAATCAGATGTACGAAGCCAATTCGCTTTGGACTCCGTTACCTGTATTAGAGCGAAAAGTCAACTGCACGTGTCTTCGTTGTTAAACCAGGTTAGCCAGCTAGCCATTGCGAGCAATAGAAGATAACGACACACACCATGGGCGAAAATGCCAAAGGACCTGGAGTGTTTCTCGAACTAAGGAAGCGGTTGCAAAGTGGTCTTCTTGTTATCTGgAGAGATGTGGCGAAGAGCTATGCAGAGGTGAGGGTTACAGGAGGAGATTCGTCCCTCCACATCCGGACTCCTCGGGGCCTGCTAATCGTGGAGCTGCCAGCAGGGGTCAGCCTCGTGGAGGGCTCCTGCAGGGAGGCACCTGAAAGAGGAGATGAGATACACTTCAGAATGCGCCTCAATGTGGACCAGCACACAGATGACACAGGGGCCCTggggagtgtgatggagaggCTGCAGGTCCGAGAGAGTTATTCCTTCCACTGCCAGTCCTGTGGGACCAGGGTGCTGGAAGAGAGggtgtTCAAGCGAGTGCTCCCTCTCCCCAACTGCAACTGGAGCTCCCTGGTGGATGACTGGTGCTGCCATCCGGACCCCTTTGCCAACCTGAAGCTGCTGCCCCGAGCGGAGGACTGTTTACTGGGCGACACTCACCTCCTTGTGCCCCTGGATAGAGGCTGTGAGGAGACTCTCACCCAGGAGCTCAGCCCCATCACCAACAAAATGGCTGATGGTCAAAATCAGGACACACCGAAACCCAACCGCAGGCGTACGCTTGTCTCCTGTAAGAGCTGCACAGCCGGCCTGGGAGAGGCTGTGGCACCAGGGACCTTGAAACTCTACATCACAGAGGTGACGGTGAGACCCAGTGTGGGAGACAGCCAGTTTGATACCTCTCCAGACAGGtcactgttcctggaacagaccATAGCTGCCAGACTGGTGGAGCTGTCCTCCTCACAGAGCGTGTTTCGTTTCTCTATCCAGGCCTCAGATGGAAAAGCCTTCATATTgCTCTGGCTCCTGAACAGCGACTCCCTCATTGCCTCGTTCTCTGCCACTCCGTCATTGACTGTCAGAGGTGATGCTGTCACCTCTCCCGGCCACCGCCAGTGTTCTGAGCATCAATCACCCACTGAGGCTGGCAGCGCCGTCAAAGTTCTCTATCTCCCCTGTTCTCCCTCTGCCAGCACACACCAGGAtgttgTAGACACCTGGGAGAAGGACATCGGTGTCCACCCCCTAGAACTGCCCCTGACCACGTGCCAGGAGCTGTTGTCGGTGCTGACAGCCAGTACTTCCTGTCTCCCTCCGTCGCTGCATTCCATGAACTCCTACCAGGTGGCATATATGAGACTGTAATGTCAGAGGTCAAGAGCCATGGATCCACTCATCTTTCCTAGAGGGAGGATCAGCAGAAGAAACACTGGAACACTAAGAGTACAGTTACTTATCTGTCTTAGGCTGTGTTCAAGACGCACGTAATGGAAAACCAAGTTCCATTGCCCAAGTTCAGCTGGTGCATACCTCCGAGTCGAGCATTCTCCTCCTAAAAGAACGATCATTCTGTTATACGTTTTGAAAAGGTTTCTTCAATTTGgtcctactgaacatgaccctgatAGCTGCTGTAATGCagactatgtaaaaaaaaaaaaaagacttgtAACTAATCATTCCAATGGAATGACTGAGTTATTGATGACCTGCCCAGATTAAATAGTGAATCTGACTAACA
>XM_036973906.1
GGCGGTAGAAAGGTTCCGGCTCGTGTTGATAGCTAGTGAAATATATGCCGTAGAAGTCTTTGCTGTTTTAAATTTATAGGCTGATGATTTGTATTGCTACATTTGCTTTAATTCGCCATACTGACAATCAGATGTACGAAGCCAATTCGCTTTGGACTCCGTTACCTGTATTAGAGCGAAAAGTCAACTGCACGTGTCTTCGTTGTTAAACCAGGTTAGCCAGCTAGCCATTGCGAGCAATAGAAGATAACGACACACACCATGGGCGAAAATGCCAAAGGACCTGGAGTGTTTCTCGAACTAAGGAAGCGGTTGCAAAGTGGTCTTCTTGTTATCTGgAGAGATGTGGCGAAGAGCTATGCAGAGGTGAGGGTTACAGGAGGAGATTCGTCCCTCCACATCCGGACTCCTCGGGGCCTGCTAATCGTGGAGCTGCCAGCAGGGGTCAGCCTCGTGGAGGGCTCCTGCAGGGAGGCACCTGAAAGAGGAGATGAGATACACTTCAGAATGCGCCTCAATGTGGACCAGCACACAGATGACACAGGGGCCCTggggagtgtgatggagaggCTGCAGGTCCGAGAGAGTTATTCCTTCCACTGCCAGTCCTGTGGGACCAGGGTGCTGGAAGAGAGggtgtTCAAGCGAGTGCTCCCTCTCCCCAACTGCAACTGGAGCTCCCTGGTGGATGACTGGTGCTGCCATCCGGACCCCTTTGCCAACCTGAAGCTGCTGCCCCGAGCGGAGGACTGTTTACTGGGCGACACTCACCTCCTTGTGCCCCTGGATAGAGGCTGTGAGGAGACTCTCACCCAGGAGCTCAGCCCCATCACCAACAAAATGGCTGATGGTCAAAATCAGGACACACCGAAACCCAACCGCAGGCGTACGCTTGTCTCCTGTAAGAGCTGCACAGCCGGCCTGGGAGAGGCTGTGGCACCAGGGACCTTGAAACTCTACATCACAGAGGTGACGGTGAGACCCAGTGTGGGAGACAGCCAGTTTGATACCTCTCCAGACAGGtcactgttcctggaacagaccATAGCTGCCAGACTGGTGGAGCTGTCCTCCTCACAGAGCGTGTTTCGTTTCTCTATCCAGGCCTCAGATGGAAAAGCCTTCATATTgtgttgTAGACACCTGGGAGAAGGACATCGGTGTCCACCCCCTAGAACTGCCCCTGACCACGTGCCAGGAGCTGTTGTCGGTGCTGACAGCCAGTACTTCCTGTCTCCCTCCGTCGCTGCATTCCATGAACTCCTACCAGGTGGCATATATGAGACTGTAATGTCAGAGGTCAAGAGCCATGGATCCACTCATCTTTCCTAGAGGGAGGATCAGCAGAAGAAACACTGGAACACTAAGAGTACAGTTACTTATCTGTCTTAGGCTGTGTTCAAGACGCACGTAATGGAAAACCAAGTTCCATTGCCCAAGTTCAGCTGGTGCATACCTCCGAGTCGAGCATTCTCCTCCTAAAAGAACGATCATTCTGTTATACGTTTTGAAAAGGTTTCTTCAATTTGgtcctactgaacatgaccctgatAGCTGCTGTAATGCagactatgtaaaaaaaaaaaaaagacttgtAACTAATCATTCCAATGGAATGACTGAGTTATTGATGACCTGCCCAGATTAAATAGTGAATCTGACTAACA
>XR_005043583.1
GGCGGTAGAAAGGTTCCGGCTCGTGTTGATAGCTAGTGAAATATATGCCGTAGAAGTCTTTGCTGTTTTAAATTTATAGGCTGATGATTTGTATTGCTACATTTGCTTTAATTCGCCATACTGACAATCAGATGTACGAAGCCAATTCGCTTTGGACTCCGTTACCTGTATTAGAGCGAAAAGTCAACTGCACGTGTCTTCGTTGTTAAACCAGGTTAGCCAGCTAGCCATTGCGAGCAATAGAAGATAACGACACACACCATGGGCGAAAATGCCAAAGGACCTGGAGTGTTTCTCGAACTAAGGAAGCGGTTGCAAAGTGGTCTTCTTGTTATCTGgAGAGATGTGGCGAAGAGCTATGCAGAGGTGAGGGTTACAGGAGGAGATTCGTCCCTCCACATCCGGACTCCTCGGGGCCTGCTAATCGTGGAGCTGCCAGCAGGGGTCAGCCTCGTGGAGGGCTCCTGCAGGGAGGCACCTGAAAGAGGAGATGAGATACACTTCAGAATGCGCCTCAATGTGGACCAGCACACAGATGACACAGGGGCCCTggggagtgtgatggagaggCTGCAGGTCCGAGAGAGTTATTCCTTCCACTGCCAGTCCTGTGGGACCAGGGTGCTGGAAGAGAGggtgtTCAAGCGAGTGCTCCCTCTCCCCAACTGCAACTGGAGCTCCCTGGTGGATGACTGGTGCTGCCATCCGGACCCCTTTGCCAACCTGAAGCTGCTGCCCCGAGCGGAGGACTGTTTACTGGGCGACACTCACCTCCTTGTGCCCCTGGATAGAGGCTGTGAGGAGACTCTCACCCAGGAGCTCAGCCCCATCACCAACAAAATGGCTGATGGTCAAAATCAGGACACACCGAAACCCAACCGCAGGCGTACGCTTGTCTCCTGTAAGAGCTGCACAGCCGGCCTGGGAGAGGCTGTGGCACCAGGGACCTTGAAACTCTACATCACAGAGGTGACGGTGAGACCCAGTGTGGGAGACAGCCAGTTTGATACCTCTCCAGACAGGtcactgttcctggaacagaccATAGCTGCCAGACTGGTGGAGCTGTCCTCCTCACAGAGCGTGTTTCGTTTCTCTATCCAGGCCTCAGATGGAAAAGCCTTCATATTgCTCTGGCTCCTGAACAGCGACTCCCTCATTGCCTCGTTCTCTGCCACTCCGTCATTGACTGTCAGAGGTGATGCTGTCACCTCTCCCGGCCACCGCCAGTGTTCTGAGCATCAATCACCCACTGAGGCTGGCAGCGCCGTCAAAGTTCTCTATCTCCCCTGTTCTCCCTCTGCCAGCACACACCAGGAGTAAGACAGCCTACATACCCATCTCCTGCTGCATTTCTGATAGAtgttgTAGACACCTGGGAGAAGGACATCGGTGTCCACCCCCTAGAACTGCCCCTGACCACGTGCCAGGAGCTGTTGTCGGTGCTGACAGCCAGTACTTCCTGTCTCCCTCCGTCGCTGCATTCCATGAACTCCTACCAGGTGGCATATATGAGACTGTAATGTCAGAGGTCAAGAGCCATGGATCCACTCATCTTTCCTAGAGGGAGGATCAGCAGAAGAAACACTGGAACACTAAGAGTACAGTTACTTATCTGTCTTAGGCTGTGTTCAAGACGCACGTAATGGAAAACCAAGTTCCATTGCCCAAGTTCAGCTGGTGCATACCTCCGAGTCGAGCATTCTCCTCCTAAAAGAACGATCATTCTGTTATACGTTTTGAAAAGGTTTCTTCAATTTGgtcctactgaacatgaccctgatAGCTGCTGTAATGCagactatgtaaaaaaaaaaaaaagacttgtAACTAATCATTCCAATGGAATGACTGAGTTATTGATGACCTGCCCAGATTAAATAGTGAATCTGACTAACA

Function

symbol description
ube3d Predicted to enable cyclin binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D).

NR:

description
E3 ubiquitin-protein ligase E3D

GO: NA

KEGG:

id description
K20803 UBE3D; ubiquitin-protein ligase E3 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973905.1 False 1855 mRNA 0.52 10 33382980 33401872
XM_036973906.1 False 1667 mRNA 0.51 9 33382980 33401872
XR_005043583.1 True 1899 mRNA 0.52 10 33382980 33401872

Neighbor

gene id symbol gene type direction distance location
LOC110518895 LOC106583864 coding downstream 45739 33301115 ~ 33337241 (-)
LOC118964365 NA coding downstream 96716 33286212 ~ 33286264 (-)
LOC110518882 LOC106583857 coding downstream 98201 33277982 ~ 33284779 (-)
LOC110518858 LOC106583820 coding downstream 325547 33041673 ~ 33057433 (-)
LOC110518755 LOC106583774 coding downstream 369619 33006168 ~ 33013361 (-)
prss35 LOC106583947 coding upstream 105722 33507594 ~ 33513383 (-)
prdm13 LOC106583971 coding upstream 408773 33810645 ~ 33818250 (-)
zgc:172323 LOC106583978 coding upstream 426351 33828223 ~ 33835034 (-)
tstd3 hs6b coding upstream 437090 33838962 ~ 33844810 (-)
LOC110519190 NA coding upstream 643731 34045603 ~ 34046368 (-)
G248213 NA non-coding downstream 1235 33381543 ~ 33381745 (-)
G248210 NA non-coding downstream 4680 33378009 ~ 33378300 (-)
G248190 NA non-coding downstream 35667 33346968 ~ 33347313 (-)
G248189 NA non-coding downstream 36325 33346455 ~ 33346655 (-)
G248152 NA non-coding downstream 135104 33247381 ~ 33247876 (-)
G248215 NA non-coding upstream 73 33401945 ~ 33402258 (-)
G248229 NA non-coding upstream 763 33402635 ~ 33402897 (-)
G248231 LOC106583887 non-coding upstream 3128 33405000 ~ 33405363 (-)
G248234 NA non-coding upstream 12530 33414402 ~ 33414616 (-)
G248235 NA non-coding upstream 12808 33414680 ~ 33414972 (-)
LOC110518371 LOC106583543 other downstream 1801778 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 2437137 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 3165391 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 3183210 30199232 ~ 30199770 (-)
G244379 NA other downstream 3205572 30174013 ~ 30177408 (-)
G248239 LOC106605043 other upstream 17557 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 955403 34357275 ~ 34359451 (-)
G249978 NA other upstream 1487634 34889506 ~ 34889954 (-)
G249990 NA other upstream 1494086 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 2738240 36140112 ~ 36144572 (-)

Expression


Co-expression Network