LOC110504028 (LOC106604995)


Basic Information

Item Value
gene id LOC110504028
gene name LOC106604995
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33665557 ~ 33702310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582823.2
ATGGACGGACGTGTATTCTGGAATCGGACCTCTCAAATTCTTCTCAATGAATCTTGGGACAATGAGTGCAATGACCATGAtcttttttattataattttgtCCGTCTAACAGAGACCACTATTTTGCCTTCTCTCATTGGAATCCTCTGTTCAACGGGGCTTGTAGGAAACATTCTGGTCTTGGTGACTATCCTAAGGACCACAAAGAAGACCGTTCCAGACGTATACATCTGTAACCTGGCCGTGGCTGATGTGGTCCACGTGACGGTCATGCCCTTCCTGATCCACCAGTGGGCCCGGGGGGGGCACTGGGTGTTTGGCAGCACCCTCTGCACCATCATCACCTCCCTGGACAACTGCAATCAGGTGGCCTGTGCAGCCGTCATGACCGCTGTCAGCCTGGACAGGTACCTGGCGGTGGTGCACCCGTTCCGTCTGATGACCCTCCGAACCCGCTCTAAGACAATCTGGATCAACCTGTTTGTGTGGGTGGTGTCATTTGTCATGGTCCTTCCCGCCTGGGTCCACTCCAAGGTGATTCGCTTCCCTGACGGACTGGAGAGCTGCTCCATGAACCTGGTCACTCCCAAAGAGGTGCTCTGgtACACCCTATATCAGACCATCACGTCTTTCTTTCTGCCCCTGCCCCTTATCATCACCTGTTACATGCTGATCCTGTGCTATACCTGGAGGATGTACCTGAAGAACAAAAGGGAACGGCGTGCTAACAACCAGTCCCGGGAGCGAGCCATCCGCCTCACCAAGATGGTTCTGGTCCTTGTGGCGGTTTTCCTGGTGAGCGTAGGGCCCTACCACATGCTCCAGCTGGTCAACTTAACGCTGCGGAGGCCCACGCTGGCCTACTACACCTGCTACTACCTGTCAGTGTGCCTCAGTTACGCCGCCAGCAGCATTAACCCTTTCATCTACATCCTGCTTAGCGGACACTTCCGTCGCCGGCTCACTTACCGCAAGCCGCCCAGCAGGCCTGTTGTTGAGAGGGAGCCTAACGGGCCCCAGGTCCGTACACCACACTCCAGCTTCTGACAGTCTTGTCCTCAAagcaggcacaaacacacacacacacaccaccaccactacagcctGTCCCCAACACACTGCGTGGGGCATTACCTATGGCAGGAGCATTACCTTTTGATCAAGGATTGCTTTATTTGACATTGTGGATTGACTTACACCTCAACAGGATCAGAGTGTTGTTATTTATTTTCTATTATGGTTTTCAAACGGACTGTACGATAGCATTGGGATATTGCAAGGATTGATCCACTATCATTTTGGATTTCCCTGAATTCGGCTGACATTACTTTCactgtgtattttattgtataGCTAAAACACAAATTACACATACTAAGTGTTTGCCATTAACACATAGTTTGGCATTTGTTTTCAACCTATAGTTAGTGTTGCTATATCATCAATTGGTGCATTGATTGGATTGTGTGGGACTTTGAACTCACAGAAACATCTGTCCTACTGTATGTACGGCTAACAGTGCTGAGACTGCTGagtgaatactttttttttttaccgttaGTCTGAATGCTAAGCATTAGACTGGAATCACTGGGATCGGTCCAGGGTGATTTGGTACTGTCTGGTGTTAACTGGGCTGGACTGGGAACTGGCCCCAGGATGTAACGGTATTACTAGTCAACAGACTGACTGAACACgggccacagacacacagatagacCGCACCACCAGGGGCATCTAATCAAACAACTCCTCCTTACCCTCACCCAGCTTGTGATCAATAAAAAGCCTATAGCAAACCAGATCAGACAGTTAGGAGCAGCGTCACACCCCCGGCAAGGCTAAGGGGAGAATACAGTGCAACCCCTCCCCACTCTCGCTttctctattgttctctctctatGGTAATCCCACTCTGTTTTTACTCTAAAATTGCCTCAGGCATAGAGTAATTTGACATATTGATCAATATGTCTCAATGTCAACACACTCCTGCTGTCTCCAGGATTTCCAATTAGTCTCTTATTGGATTGGTTGTGCTCAACATACTAAATTCCATTGTGTTATTGGTCGACGATGGATTTATTTGTATGTTATCAGTACCAGTGTACCTAATTTATTAACGTTAACTCTCTGCTCACACCTCCTCCAATAACATCAGATTATTAAATCGACTAATATACCAATGTAATATAATTAGATTTGCTTCCTACTCGCTCTCTATACTCTCTTCAACTGTTACTTCAAAATATTCCCTTCCCATACTACT
>TU283571
AACGAAGTGCACGCTTCAACGGAGCAGAAGTCCGTACCTGGCGGTGGTGCACCCGTTCCGTCTGATGACCCTCCGAACCCGCTCTAAGACAATCTGGATCAACCTGTTTGTGTGGGTGGTGTCATTTGTCATGGTCCTTCCCGCCTGGGTCCACTCCAAGGTGATTCGCTTCCCTGACGGACTGGAGAGCTGCTCCATGAACCTGGTCACTCCCAAAGAGGTGCTCTGgtACACCCTATATCAGACCATCACGTCTTTCTTTCTGCC

Function

NR:

description
PREDICTED: melanin-concentrating hormone receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582823.2 False 2269 mRNA 0.47 5 33665557 33702310
TU283571 True 267 lncRNA 0.55 3 33693650 33700133

Neighbor

gene id symbol gene type direction distance location
me1 LOC106583951 coding upstream 12491 33532885 ~ 33653066 (+)
snap91a LOC106583925 coding upstream 158252 33450441 ~ 33559250 (+)
LOC110518918 LOC106583887 coding upstream 223160 33401850 ~ 33442397 (+)
tpbgb LOC106583879 coding upstream 321035 33341367 ~ 33344522 (+)
LOC110518871 LOC100194712 coding upstream 492842 33086509 ~ 33172715 (+)
usp45 LOC106583983 coding downstream 143936 33846246 ~ 33894315 (+)
pnisr pnisr coding downstream 196564 33898874 ~ 33907094 (+)
coq3 LOC106605038 coding downstream 207471 33909781 ~ 33926457 (+)
LOC110519140 LOC106584034 coding downstream 224564 33926874 ~ 33954721 (+)
fbxl4 LOC106605030 coding downstream 317523 34019833 ~ 34041157 (+)
G248130 NA non-coding upstream 247916 33417329 ~ 33417641 (+)
G248120 ube3d non-coding upstream 270351 33394474 ~ 33395206 (+)
G248113 NA non-coding upstream 282859 33382466 ~ 33382698 (+)
G248112 NA non-coding upstream 283411 33381853 ~ 33382146 (+)
G248619 NA non-coding downstream 29956 33732266 ~ 33732501 (+)
G248624 NA non-coding downstream 33121 33735431 ~ 33735763 (+)
G248627 NA non-coding downstream 36426 33738736 ~ 33738957 (+)
G248641 NA non-coding downstream 47647 33749957 ~ 33750187 (+)
G248658 NA non-coding downstream 58297 33760607 ~ 33760856 (+)
G248134 NA other upstream 241454 33423789 ~ 33424103 (+)
LOC110518733 LOC106583759 other upstream 889770 32771075 ~ 32777409 (+)
G246282 NA other upstream 1806238 31852668 ~ 31859319 (+)
G245930 NA other upstream 1984917 31669958 ~ 31680640 (+)
G245799 NA other upstream 2040514 31492207 ~ 31641357 (+)
G248750 LOC106583978 other downstream 125910 33828220 ~ 33835275 (+)
G248794 NA other downstream 272166 33974476 ~ 33977835 (+)
G248795 NA other downstream 303848 34006158 ~ 34013057 (+)
G249245 NA other downstream 600262 34302572 ~ 34302907 (+)
G249323 NA other downstream 717580 34419890 ~ 34420612 (+)
G248552 NA non-coding upstream 18414 33675028 ~ 33675236 (+)

Expression


Co-expression Network