prdm13 (LOC106583971)


Basic Information

Item Value
gene id prdm13
gene name LOC106583971
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33810645 ~ 33818250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596343.2
GAGCCAAACTCTCTCACACCGCGCGCATACTGTTCGCCCTTGCGCGTTAATGTGTCGAGGGGGTACCTTGCTGCTCCATTAGAAAAGCCTGATCACATACGCCACCGCATCACTTTGCGGGCGGAGATTGGCCTGTCCTCATCTCTGTGACTCCTTCTTGTCTCAATCAGTCACTGCGTGGTCTTCATGGTTCTCAAACCACTGCACGGAGAGCCAGCCATGCAAGCAACTCGGGCATCCGCTATCAGTGTGTTTGCAGACTGCAGCATCCCCGCCGGCCTGCGGATAGGACCGGTGCCGGGCGTCTTCAAACTAGGGAAATACGTTACTGATCGCAAAGAGGTCGTAACCAAGAGAAAGATTCGGCTGCTGAGGGGTGAAATCGTGGATGAATCAGGTTGCCCTGTGCCAGACTGGATTGGGTGTATCCGGGCGGCCAGAAACAGTCAAGAACAGAACTTGGAGGCTGTCTCAGATCTACCTAGTGGGCAGATTTTCTATCGTGTGCTGACGGAGATCCCAGCAGGCGAGGAGCTGAGTGTGTGGTACTCCAACACTCTGGCTCAGTGGTACGACATCCCTACCACTGCCACTCCAACACACGACGAGAAAGGTGAAGAACGCTACATTTGCTGGTACTGCTGGAGAATATTTAAATATCCCAACACACTCAAGGCCCACGTCCATTTCCACTGCGCTCTGAGCAACGGGCGGAGCTTTGTGAACAGCGAGCAGGCCAGGAGCACAGACAGCTTCAGCAGGTCACCCAAATCCGGGGACATTCCCTACACCTCCGCCTCGCCCAGGAACGGCCACAACACCTCCATCTCAGACTCTGTCAGACGGACCGTGTCTTCCTCACCTTTCCTCAACAAAGTTGGCGTATCAAAGAAACCCAGCTCtgaggagcaggacagagcacTTGACATGAGCGTTACCTCGGCCAGAAACCACGGACATCTCATGGGCCTTGGCGCAACGTCTTCAATGTTGAGCAACATGGGGTTCCACCCAGGCGTGCGCTCTGCATTCAAGCCCATGGGCCAAACCAAAGTCCCCACGGCTGACGTCTACAGAGAGGAAACTAATGGGAAGCATAATGGACTAGGCTTCAGCAAACTCATGGGGAACATGAAATCAACGCGAGCCTTGAATGAACCTTTGACCGGAAGCCATCCCTCCAAGTGCGTCCATCCATTAGATTCTACATCTCCCGTTGTCCCGTGCGCAAACACCCTCAGGGGTTTTCCGTTAATACCTAATTTTGAGGAGACATCAGCTTTCAAGCACGTGGAGAGCCGAATGCACTCTGGACTGTCCCCCTCGCGCTACTCTCAGATGTCCTCTGGATTCCATTTTGAGAGGTTTTCTCTGCCTCAGTTTGATGGCGTCAAGCCATATAATGGAGATTGCAATATCCCCCTCATGCCATTCACCGTGTACAATGGCGAGCTGCTTTATAGTTCACCATACTACCCACTGAAATTCCATTTTAGCAATCTCCTAAAATACCCGGAGACAATGTCCTACTTTGGCGCACCTGCACTCAACCAAGACCTGGGTTCAATTACCAACATTGACAGGGAGATAGCCATGCACACTCAACAGTTGTCTGAAATAGCCGTTGAAAAGAACCGAACCAGGCTCGACTCTATGCCCACTGCTAACACAGGCTCAGGGAAGCCCAAAAAGGGACACTTATGTCTTTACTGTGGTAAACTGTACTCTCGGAAATACGGACTCAAGATTCACATGAGAACTCACACAGGGTACAAACCGTTGAAGTGCAAAGTTTGTTTTCGGCCCTTCGGTGACCCCAGCAACCTGAATAAGCACATCCGTCTGCACGCGGAAGGGAACACCCCGTACAGGTGCGAATTCTGTGGCAAGGTGCTGGTGCGCCGGAGGGATTTGGAGCGTCATGTCAAATCAAGGCACCCTGGACAAACAATAAAAAAAGCTGAGGACAAAACCGAGAGCATATTCGAGGATCAAGAGCAAAAGAGCGACAATGACAGCGACGTAGATGTATGCTTCACCGATGATCAGAGCGACCAAGAATCCAGTAAAATAGATGATTAATTGAGATTTTGACACGAATATGGCAAAGACGGCATAATGTTTTGTGAAATTGTTACAGGTTACCTGTACATATTTCTGTGTAATATGATTTCCCCAAGGAGCGAAAGTTATTTATGTATGTTTTAAAGCTATTGAAAATGTAAttgttcattaaaaaaaaattctgattAGGACTAGACAATTTTCAAATGAGCTTTTTCTTTTACAACAATGTCCTATTCGTTTCAGATGGAACAAAGTATAGGCAGTATGATTTCAGAATTGTATAATATCACAGCTGATGATAATGAATTTATTTTTGTATACGCTAATTGGTAGCCAATATGTTCCCCAAATAGAGGTCGGCTGCACTTTTACAATTACAATTACTTAAATGTTGCACTTTCTTGCGAGGGCATTTAATTGTTTTAGGGCAAAGTTGAAAAGGCTCAGCAAATATTTATAGCAGTTAGTACCAATCCATTATTTAAGGATCTTGTTTATAGTAAAAAATAACATCTGATTTAAACAGCATCATGTACAAATCTAAGAATATGATATTTCACTGCTCAGTGAAAAAGTGTTGTATGTTTGTTCATAAGTGATATTGTATATTGACAATATTTTCCTCTTGTTCATTGAGTTGTTCCTTTTTAATAAATGTAATTTAAAACTTTGAAATGGTTTGTAACTTGATTCAAATATATAGTCTACACTCAAGCCTACTGATTTATTAGGCTATCTAATGCACATCAAATAAATTCCCCCCACTTTTAACTGCCATGGATAGTGCACTAATGAATAATTCGATATTCCACTTTTAGCCTACATTGTAGACAGGGTTATCAGGATGTCGTCTCTATATTTCCTGTGCAGTTGAAGTTAAGATTACTTCCGTTTGAAGACGTTTTTCAAATGGGGTGTCCTCTGAATTCCTCTGAGGACGCTGTCGATTCCGGACAAAACGCTTGGCTGTGCGCATTACAGTAAACCCGCAATATATCTCACCACTGTAGCGCATGGTGTAGCCATTAAGAAGAATGACTTGACTAGTCGACGAGCGTTGGGCCGTTTATAAAGTAGGCCTACTGGGTTCTTACCTTTGTAAATACAATATTACATTTGATTaatatcatcatcaccatcaaaaTGGTCTGATCCAACAAGTAAGAGATTCAACAAAATCCAGGTAcattgaaaacaaacaaaaacgcgGGTTCTGCAACAAGTAGGCTTCTAGATACATACTCGATACATtttattcaaatatttttttttaaagaaaatgaatAAACATGGTCTGTTTCCAACACATTCATGAATCTATACGAATATGTGCTGAAAGGCCTGGCTGGAAATGAAATCAACCTCAATCTTGATAGAGAGCTAAACCTTCGACAACATGCACTATTCACGACATAAAGTCAACTTCTCCCTATAGAGATAAGGAGCAGTTTTAACCGTGCAGTGAAAATGCTTCCTTCCTACATTGTGCGTAAAAGTGCAGTTTCAGGAAGGTGTCTTGTTCCGTGGAAAGAGCAGATATAATCTTAAAATAACAGCAGGTCAGATTTATGGCCTGTTGTAAAAGGAACATTTAAAAGGGCAAAATACGTTTATTTGGGGAAAAAGGTCCGATCCAGAAAAGGGTTAGAACAAAAATATTGATGCATTTCAGACTCAGATAGTTCTAAAATAGTATAAAGTG

Function

NR:

description
PR domain zinc finger protein 13-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K24645 PRDM13; PR domain zinc finger protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596343.2 True 3769 mRNA 0.44 4 33810645 33818250

Neighbor

gene id symbol gene type direction distance location
prss35 LOC106583947 coding downstream 297262 33507594 ~ 33513383 (-)
ube3d ube3d coding downstream 408773 33382980 ~ 33401872 (-)
LOC110518895 LOC106583864 coding downstream 473404 33301115 ~ 33337241 (-)
LOC118964365 NA coding downstream 524381 33286212 ~ 33286264 (-)
LOC110518882 LOC106583857 coding downstream 525866 33277982 ~ 33284779 (-)
zgc:172323 LOC106583978 coding upstream 9973 33828223 ~ 33835034 (-)
tstd3 hs6b coding upstream 20712 33838962 ~ 33844810 (-)
LOC110519190 NA coding upstream 227353 34045603 ~ 34046368 (-)
pou3f2b LOC106584047 coding upstream 259948 34078198 ~ 34081695 (-)
LOC110504035 LOC106581764 coding upstream 270593 34088843 ~ 34248604 (-)
G248724 NA non-coding downstream 3298 33807112 ~ 33807347 (-)
G248712 NA non-coding downstream 10633 33799808 ~ 33800012 (-)
G248711 LOC105030512 non-coding downstream 11278 33799098 ~ 33799367 (-)
G248708 NA non-coding downstream 13421 33797004 ~ 33797224 (-)
G248678 NA non-coding downstream 37874 33772375 ~ 33772771 (-)
G248994 NA non-coding upstream 77044 33895294 ~ 33895561 (-)
G248995 NA non-coding upstream 77994 33896244 ~ 33896454 (-)
G248997 NA non-coding upstream 89433 33907683 ~ 33907976 (-)
G249012 NA non-coding upstream 109702 33927952 ~ 33928467 (-)
G249026 NA non-coding upstream 132319 33950569 ~ 33955080 (-)
G248239 LOC106605043 other downstream 390938 33419429 ~ 33419707 (-)
LOC110518371 LOC106583543 other downstream 2229443 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 2864802 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 3593056 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 3610875 30199232 ~ 30199770 (-)
G249485 LOC106584080 other upstream 539025 34357275 ~ 34359451 (-)
G249978 NA other upstream 1071256 34889506 ~ 34889954 (-)
G249990 NA other upstream 1077708 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 2321862 36140112 ~ 36144572 (-)
G251681 NA other upstream 2539233 36357325 ~ 36357971 (-)

Expression


Co-expression Network