zgc:172323 (LOC106583978)


Basic Information

Item Value
gene id zgc:172323
gene name LOC106583978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33828223 ~ 33835034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596349.2
TGCACATCAAAAGCAGCAGAGGTCCCATAGGTGAAGACTGACCACCTCCAGAGAACGCAGACAAAGGCAAACCCGAGCAGCCGCCAACATGAGTCGCAGCCCTGAGAGGATTTCGTCCTACCGACGCCACTTTGAGGACAGCGGCAGCTCATCCTCCTACCAGGTTAGGGTGTCCAGCCCATCCCCGACCCGGAGAGTTAACcgccaccagtcagccagctaCTCGCGCAGTGCCGGAGCCAGCAGTATGCAGGCCCAGACCATGGGAAGAAGGACCGTCTCCACCTCACGTAACGCCCGCATGGCTGGCGGGAATGTGGGAACATTGGCATGTGTGGGCTATGGCAACGGGGCCCCGGTGGACCTGGACGCATCTGCTGCCGAGAACAAAGTATTCCTCAGCACGCGCAGTGGTGAGCGGCAGGAGATGGTCGTATTGAACGACAGACTTGCTGTTTACATTGAGAAGGTTCGGTCCCTGGAGCAGCAGAACAAGTTGTTGGAGATGGAGATTGACGGCATCCAGAACCGGTTCGTGAAGCCGTCGGGCCTGCGCAAACTCTATGAGGATCAGCTGAGAGATCTGAAGAAGATTGCAGATCAGATGAGAATGCAGCGGGACCAAGCCTTAGCTGGCAAAGAGGCCATGGCAGGTCAACTGGAGATAACCAAAGTCAAATACGAGGAGGCAGTTGAGCTGAGGAGGCGGGCTGAGATGGAGATCGAAGCATTCCGTCCGGATGTGGACAGAGCCACCTCTCAGCGCATCGCCCTGGAGAAACAGCTTGAGCAGTTGGAGGTGGAGATTGAATTCCTTCAGAGGGTGCACAAAGCGGAAATTGAAGAGCTACTGAAAATGATATATGCTGCCCACTCCTCAGCCCAGAGCGCTTATGACCTCCCCGACATCTCAGGCGCTCTCAAACAAATCCAAGCTCAGTATGACGAAATTGCGGCAAAAAATTTACAGGAAATGGATTCCTGGTATAAAAGTAAATTTGAAGACCTGAACAACAAGACGACGAAACATGTGGATATAGTTCGAAGTGTCAGGGAAGAAGTTGCTGGCGCCAAGAAGGATATCCTAAACAAAGAGCGTGGCCTGGAAGCTTTGAAGACCAAGAATGAGGCTCTGGAGGCACAAATTCGTGAAGCACAGGAAAAGTACAAGAAAGAGCTGGAGGACCTTCAGGCAAGAATTGAGGCCCTGAAGGAGGAACTGAAATCCACCAAGTCTAAAATCGCTCTGCACCTGCGTGAATACCAGGACCTTCTGAACATGAAGATGGCTCTGGAGATTGAGATCACAACTTACAGGAAGCTGATTGAGGGTGAGGACTTGCGACTCACAACCATGGTTGGGACCATGTCCATAATGAGTAGCAGCTCAAGCTCCATGAGTGCTGGGATGAGTGTGGGCATGGCTGGAGGCATTGGACCTGGAGGCAGTGGTGGAGGAATGGGTGGAGGAATGGGTGGCGCTGGAAGCTTAGGTGGAATGGGTGCTGGAGGGATGGGAGCTGGAGGCATGGGTGCAGGAGGCAGGGGTGGAGCTGGAAGCATTGGTGGAGGAATGGGAGCTGGAGGAATTGGGGCCAAAGGCGTGGGTGCTGGAGGTGTGGGTGCTGGAGGCCTAGGAGCTGGAGGAATGGGTGGAGGTATGGATGGTGGAGGAATTGGTGCTGTAGCCAATGGTGCTAAAGGCATGGGTGCTGGAGCCATGGGTCCTGGAGGCAATGGTGGAGGCATGGGAAAAGGTGCAGGTGATTATGGGTACGGCGCCTCCATGGAGTACTCCCACGAGGAACAGGCAGTGGAGATGACGGAGAGGAGGACGGTGCTCATCAGAACAGTTAAATCGGAGGATGAAACACTGGAAAGCGACACAAAGGAGCAAACCTACATAATCTCTGGCGCTGCCGACGACTCGGACGAGGAATAGGCGTAAATGACCATGTGAcctcctctcaccccttaacCCCTCACGCCCCTGGAGCTTTGCACTGACGGCTCATGTCTGGTCTCTGACCTTTGACCAAGACATGAGACCATGAATGACCCTGCAACCTAGTCAAGCAGTACCCTTCAGCTCTTGTGATGTGCCTTTGAACCACATATTCAGAAACTCTGTGTGCCTTACACAGCTACTCAACAAGCAGCAAATAAAGCTCTCTGCATTCAA
>XM_021596357.2
TGCACATCAAAAGCAGCAGAGGTCCCATAGGTGAAGACTGACCACCTCCAGAGAACGCAGACAAAGGCAAACCCGAGCAGCCGCCAACATGAGTCGCAGCCCTGAGAGGATTTCGTCCTACCGACGCCACTTTGAGGACAGCGGCAGCTCATCCTCCTACCAGGTTAGGGTGTCCAGCCCATCCCCGACCCGGAGAGTTAACcgccaccagtcagccagctaCTCGCGCAGTGCCGGAGCCAGCAGTATGCAGGCCCAGACCATGGGAAGAAGGACCGTCTCCACCTCACGTAACGCCCGCATGGCTGGCGGGAATGTGGGAACATTGGCATGTGTGGGCTATGGCAACGGGGCCCCGGTGGACCTGGACGCATCTGCTGCCGAGAACAAAGTATTCCTCAGCACGCGCAGTGGTGAGCGGCAGGAGATGGTCGTATTGAACGACAGACTTGCTGTTTACATTGAGAAGGTTCGGTCCCTGGAGCAGCAGAACAAGTTGTTGGAGATGGAGATTGACGGCATCCAGAACCGGTTCGTGAAGCCGTCGGGCCTGCGCAAACTCTATGAGGATCAGCTGAGAGATCTGAAGAAGATTGCAGATCAGATGAGAATGCAGCGGGACCAAGCCTTAGCTGGCAAAGAGGCCATGGCAGGTCAACTGGAGATAACCAAAGTCAAATACGAGGAGGCAGTTGAGCTGAGGAGGCGGGCTGAGATGGAGATCGAAGCATTCCGTCCGGATGTGGACAGAGCCACCTCTCAGCGCATCGCCCTGGAGAAACAGCTTGAGCAGTTGGAGGTGGAGATTGAATTCCTTCAGAGGGTGCACAAAGCGGAAATTGAAGAGCTACTGAAAATGATATATGCTGCCCACTCCTCAGCCCAGAGCGCTTATGACCTCCCCGACATCTCAGGCGCTCTCAAACAAATCCAAGCTCAGTATGACGAAATTGCGGCAAAAAATTTACAGGAAATGGATTCCTGGTATAAAAGTAAATTTGAAGACCTGAACAACAAGACGACGAAACATGTGGATATAGTTCGAAGTGTCAGGGAAGAAGTTGCTGGCGCCAAGAAGGATATCCTAAACAAAGAGCGTGGCCTGGAAGCTTTGAAGACCAAGAATGAGGCTCTGGAGGCACAAATTCGTGAAGCACAGGAAAAGTACAAGAAAGAGCTGGAGGACCTTCAGGCAAGAATTGAGGCCCTGAAGGAGGAACTGAAATCCACCAAGTCTAAAATCGCTCTGCACCTGCGTGAATACCAGGACCTTCTGAACATGAAGATGGCTCTGGAGATTGAGATCACAACTTACAGGAAGCTGATTGAGGGTGAGGACTTGCGACTCACAACCATGGTTGGGACCATGTCCATAATGAGTAGCAGCTCAAGCTCCATGAGTGCTGGGATGAGTGTGGGCATGGCTGGAGGCATTGGACCTGGAGGCAGTGGTGGAGGAATGGGTGGAGGAATGGGTGGCGCTGGAAGCTTAGGTGGAATGGGTGCTGGAGGGATGGGAGCTGGAGGCATGGGTGCAGGAGGCAGGGGTGGAGCTGGAAGCATTGGTGGAGGAATGGGAGCTGGAGGAATTGGGGCCAAAGGCGTGGGTGCTGGAGGTGTGGGTGCTGGAGGCCTAGGAGCTGGAGGAATGGGTGGAGGTATGGATGGTGGAGGAATTGGTGCTGTAGCCAATGGTGCTAAAGGCATGGGTGCTGGAGCCATGGGTCCTGGAGGCAATGGTGGAGGCATGGGAAAAGGTGCAGGTGATTATGGGTACGGCGCCTCCATGGAGTACTCCCACGAGGAACAGGCAGTGGAGATGACGGAGAGGAGGACGGTGCTCATCAGTTAAATCGGAGGATGAAACACTGGAAAGCGACACAAAGGAGCAAACCTACATAATCTCTGGCGCTGCCGACGACTCGGACGAGGAATAGGCGTAAATGACCATGTGAcctcctctcaccccttaacCCCTCACGCCCCTGGAGCTTTGCACTGACGGCTCATGTCTGGTCTCTGACCTTTGACCAAGACATGAGACCATGAATGACCCTGCAACCTAGTCAAGCAGTACCCTTCAGCTCTTGTGATGTGCCTTTGAACCACATATTCAGAAACTCTGTGTGCCTTACACAGCTACTCAACAAGCAGCAAATAAAGCTCTCTGCATTCAA

Function

NR:

description
PREDICTED: glial fibrillary acidic protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596349.2 False 2182 mRNA 0.54 11 33828223 33835034
XM_021596357.2 True 2177 mRNA 0.54 11 33828223 33835034

Neighbor

gene id symbol gene type direction distance location
prdm13 LOC106583971 coding downstream 9973 33810645 ~ 33818250 (-)
prss35 LOC106583947 coding downstream 314840 33507594 ~ 33513383 (-)
ube3d ube3d coding downstream 426351 33382980 ~ 33401872 (-)
LOC110518895 LOC106583864 coding downstream 490982 33301115 ~ 33337241 (-)
LOC118964365 NA coding downstream 541959 33286212 ~ 33286264 (-)
tstd3 hs6b coding upstream 3928 33838962 ~ 33844810 (-)
LOC110519190 NA coding upstream 210569 34045603 ~ 34046368 (-)
pou3f2b LOC106584047 coding upstream 243164 34078198 ~ 34081695 (-)
LOC110504035 LOC106581764 coding upstream 253809 34088843 ~ 34248604 (-)
klhl32 LOC106605029 coding upstream 456476 34291510 ~ 34328823 (-)
G248724 NA non-coding downstream 20876 33807112 ~ 33807347 (-)
G248712 NA non-coding downstream 28211 33799808 ~ 33800012 (-)
G248711 LOC105030512 non-coding downstream 28856 33799098 ~ 33799367 (-)
G248708 NA non-coding downstream 30999 33797004 ~ 33797224 (-)
G248678 NA non-coding downstream 55452 33772375 ~ 33772771 (-)
G248994 NA non-coding upstream 60260 33895294 ~ 33895561 (-)
G248995 NA non-coding upstream 61210 33896244 ~ 33896454 (-)
G248997 NA non-coding upstream 72649 33907683 ~ 33907976 (-)
G249012 NA non-coding upstream 92918 33927952 ~ 33928467 (-)
G249026 NA non-coding upstream 115535 33950569 ~ 33955080 (-)
G248239 LOC106605043 other downstream 408516 33419429 ~ 33419707 (-)
LOC110518371 LOC106583543 other downstream 2247021 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 2882380 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 3610634 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 3628453 30199232 ~ 30199770 (-)
G249485 LOC106584080 other upstream 522241 34357275 ~ 34359451 (-)
G249978 NA other upstream 1054472 34889506 ~ 34889954 (-)
G249990 NA other upstream 1060924 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 2305078 36140112 ~ 36144572 (-)
G251681 NA other upstream 2522449 36357325 ~ 36357971 (-)

Expression


Co-expression Network