usp45 (LOC106583983)


Basic Information

Item Value
gene id usp45
gene name LOC106583983
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33846246 ~ 33894315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596366.2
AACCTGAACGAGCCACCATATTGCGTCACATGTTGAGTTCACCAATTTGACTTTTTGTGGGTTCAGATGGTAGTTCTCGATGTTCCCAATCGTTTTAGAAAGTCAAGTTTATAACTGAAACTGTATTTAGCGTTTTGAACACTAGCTACAAGTATTTTGTGGACTTTTGAGTTTCTTGATTTGTATGACATACAATACAGTTCTCAATCGTTTGAAATAAGATACGACACTGCAGTGTGTTgacatattagctagctagctaacttgctagctcATTGACCAGTTTCAGGGGGAAAAAAAATAGCTACAGATGCGGCTAAAGGATCCCTTCTCGTTGAAAGTCGTCGGCATGACTAAGCGGACTAACAAGCCAAGGAAGCCTCGAGATGAAGAGTCGTCGGACGAAGTTAGCGAGCTGACCTGCCAGCATGTCAGCAAGGCGGTGGACCTGAGCTCAGTCAAGAAGGCGGTGACCTCGAGCATGTGGTCGATGTGTTCAGATTGCCTGAGGGAAAGGACTATGATAGATGGAGAGCCAGCCAGTGGCCACGACATCCTCGTATGCCTCAAGTGCGGCTTCCAGGGCTGTAGCCAGTCAGAGAGCCAGCACTCCACCAAGCATCACCAAACCCTCCACCCTGAGTCCCACTGCATCACCGTTAGCCTCGGCACCTGGAAGGCCTGGTGTTTTGAATGTAACGAAGAGCTCTCCACTCACTGCAATAAGAAGGCTTTGGCCCAGACCCTGGACTTCCTACAAAAGCACTCTGTCAAGGCAGCCTCAGGAACCACATCGAAAATGATCAAGCTTAGAGAGGAGCCCAGCGACTATGCAGACCAGTCCAGAGGGAAGAGTCCAGTCAACAACAGCACACTGGTCCTGGTCAAAGGCATCAACAACCTCGGAAACACCTGCTTCTTTAACGCAGTTATGCAGAATCTGTCCCAGACTCACATGCTGAACGACCTGATACAGGATGTGAAGGAGAAGGGACACAAGCTGAAGATCTGCCCCCCTGCCGAGTCAAACGTGGGGGCGTTGACGGTGACTCTGCCCAGCCCAGAGCCCCTGACCTCGGCCATGTTCCTCTTCCTACACAGCGTGAAGGAGTCTGGGAAGGGCCCTGTCAACCCCAAGATCCTTTTCAACCAGCTCTGCCAGAAGGCTCCACGCTTTAAGGGCTACCAGCAGCAGGACAGCCAGGAGCTGCTCCATTACCTACTGGACTCCATGAGAGTAGAGGAGACTAAGCGGATCAAGGCGGGCATTCTGAAATCCTTCAACAACCCCACAGAGAAGACTGCAGATGATGAGACCAAACGCCAAGTCAAAGCATACGGGAAGGAGGGTGTGACGATGAACTTTGTGGATCGCATCTTTGTGGGGGAGTTGACCAACACCATCATGTGTGAGGAATGTGAGCATATCTCCACAGTGAAGGAAGCCTTCATTGACATCTCCCTGCCCGTCATTGAGGAGCGGATGTCCAAGCCGTCCAACCCGGGCAGGACTGGGAAGAGCAGTCGGGAGCAAGAAGCTCACGTCTCCCACGGTGGCGAGATGCTTTCCGCAGTGCTCAATAAGAACAGCAGGAAACTTAgcggacagAAGCAGCAGCAGGGCCAGAAGTCCCCTGGCTCTGTGGAGGAGAAGGGGGCAGACAGCCCCTCAGACCACCCCGAGGAGGAGTCCCCCTCCGTAATGGCCCGTGCCGCAGGAGGTTCCAAAATGGCCGCCACCAGCAGCCTATCGGATGGCAGCGATAAAGACTCAGGCCCTCAGGAAAGTAGCAATGACGCAGACAGCGAGGCCTCGGAGAGCGAGTGGATCCCCCGGCATCCCTCGGGCCACAGCCATGGTGGCAGAGGGTCCACTCCTACCCAGTCTCCCACCCCGCCTGCCCTCTCCCCCAGGACCCAGCAGGGTGGTGCTGTGGAGCAGCTGGTCAGTGCAGTGCATAAGATGAACCTGGGCCCTGATTCAGGGGACTCACCCTCCACACACTGTCCTGAGGACCAGAgggagccccaacctcaacatcCTCAACAGTCTCCTCACTCCAACCACCAGGGGGCATTCAAGGCACTGTCCCACAGCTACACGCCCTGCTCCAAGGAGTGCTCCATTCAGTCCTGCCTTCACCAGTTCACCTCGGTGGAGCTTCTGATGGGCAACAACAAGCTGTTGTGCGAGAGCTGCACAGACCGCCGGCAGAAACAACTGCGGAAGAGCACCTCAGTAGAGAAGAAGTCTGACAAGGTGTACACCAGCGCTCGCAAACAGATGCTGATCTCTTCGCTGCCCCCGGTGGTCACTCTGCACCTGAAACGCTTCCATCAAgcagGGATGAACCTACGAAAAGTCAACCGTCACGTCAACTTCCCTCTCATCCTGGACCTGGCGCCGTTCTGCTCGGCATCCTGCAAGAACCTGGTGGCAGGGGAGCGTGTGCTCTACAGCCTGTATGGCATCGTGGAACACAGCGGGTCGATGCGCGGGGGCCACTACACAGCATACGTAAAGGTCCGTTGGCCCCAGAGGAGAACCGAGCAGCCACACCGCAGAAACATGGCAGGTCCAAGGGAAGCAAGCAGTGCCACACAGGGTCAGTGGGTTTATGTAAGTGACACCAATGTCCATGCGGTACCAGAGTCCAGGGTCCTCAACTCTCAAGCCTACCTGCTGTTCTACGAGGAGATGCTGTGACTGCCAGAGCACGGAGCTGCCCAACAATCATTGGTGTCTCAGTagacagaggaagaggggaaaaagagagagagagacctgctttGGGTATACCTCTCTCTAAACTTTGACTCCCAAGAGCATGAAACATGGCACGTACTACATGATGGGATTGGTAGTTCATCAGGGACATAAAGTCACCGTGATGTTTACTGGACTGCTCAGCATTGAAGGTTCACCACGCTGGTCCACTTACTGAACGTCCCCATACCCTTGCTCATACttctgtatgtgagagagagagttttatttttttttattttaatttatttcacctttatttaaccaggtaggctagttgagagcaagttctcatttgcaactgcgacctggccaagataaagcatagcagtgtgaacagacaacacagagttacacatggagtaaacaattaacaagtcaataacacagtagaaaaaaaggagagtctatatacattgtgtgcaaaaggcatgaggaggtaagcgaaaaattacaattttgcagattaacactggagtgataaatgatcagatggtcttGTACAGGTAAATACACcaatattggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaaaatgggtgggctatttaccgatagactatgtacagctgcagctgtacatagtgaGCGAGAGAGTGGCAGAATAGTAGGTTTGattaaatgtacaaaaaaaatgcTGTGTTATTTATATTTTACAGCCTGCTGTGGTGAATACGAATTGTATTTTTTGTAGAACATGCGAATGTGTGACTATCATTAAATGGTGATTGCCAAAAGAGTTTTTGGTAAGGGAAATTATATAAAATTATGGGAAACATATCAAAAGACTTTAAGTACCAAAAGAATGTGATCTCAAACTATTCCTGAATGGAGAGGTCCATCATGTGGCAGGCCATCCGAGTGTGTTTCAGACCAATACATTACTGTGTTGGGTCGGCACTGTTTTTTTCAAATCCTAGTTCTATTAAATATGCACACTGGTGCACAAACAATCTCTAaccacacagatacaaacacattgTGACGTTTAACAAAGAGACATTGCTACATATATGAATGCCAGCTCGCCGGACAATAAACGATTGTTTTCATTTCATTTAGTATTTTTATCCCCATATGTTCTGCTGTAGTTAAACTAACGTGTGTTGATCAATCTTGGGATTCAAATGTGTCTCACCATTTATGTTTAATTGTTCTGCAACATTTTTTTGTGGGGAATGAAATGGAGATATTTCATCTGTCGATTGTTGGGAAATTGCCAAATTATTCTGGTCAAatgagagatttctgtaagtAAAGATACGTTTTTttgtcccccccccaaaaaaaaacaaataaatactcAGTGCCTACA

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 45-like

GO: NA

KEGG:

id description
K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596366.2 True 4131 mRNA 0.49 18 33846246 33894315

Neighbor

gene id symbol gene type direction distance location
LOC110504028 LOC106604995 coding upstream 143936 33665557 ~ 33702310 (+)
me1 LOC106583951 coding upstream 193180 33532885 ~ 33653066 (+)
snap91a LOC106583925 coding upstream 338941 33450441 ~ 33559250 (+)
LOC110518918 LOC106583887 coding upstream 403849 33401850 ~ 33442397 (+)
tpbgb LOC106583879 coding upstream 501724 33341367 ~ 33344522 (+)
pnisr pnisr coding downstream 4559 33898874 ~ 33907094 (+)
coq3 LOC106605038 coding downstream 15466 33909781 ~ 33926457 (+)
LOC110519140 LOC106584034 coding downstream 32559 33926874 ~ 33954721 (+)
fbxl4 LOC106605030 coding downstream 125518 34019833 ~ 34041157 (+)
mms22l mms22l coding downstream 363038 34257353 ~ 34288713 (+)
G248754 NA non-coding upstream 6148 33838982 ~ 33840098 (+)
G248750 LOC106583978 non-coding upstream 10971 33828220 ~ 33835275 (+)
G248733 LOC106583971 non-coding upstream 27998 33816004 ~ 33818248 (+)
G248683 NA non-coding upstream 66675 33777845 ~ 33779571 (+)
G248682 NA non-coding upstream 71142 33774805 ~ 33775104 (+)
G248779 NA non-coding downstream 1870 33896185 ~ 33896449 (+)
G248781 NA non-coding downstream 2698 33897013 ~ 33897244 (+)
G248810 NA non-coding downstream 61243 33955558 ~ 33957622 (+)
G248824 NA non-coding downstream 87002 33981317 ~ 33988384 (+)
G248134 NA other upstream 422143 33423789 ~ 33424103 (+)
LOC110518733 LOC106583759 other upstream 1070459 32771075 ~ 32777409 (+)
G246282 NA other upstream 1986927 31852668 ~ 31859319 (+)
G245930 NA other upstream 2165606 31669958 ~ 31680640 (+)
G248794 NA other downstream 80161 33974476 ~ 33977835 (+)
G248795 NA other downstream 111843 34006158 ~ 34013057 (+)
G249245 NA other downstream 408257 34302572 ~ 34302907 (+)
G249323 NA other downstream 525575 34419890 ~ 34420612 (+)
rab42b rab42 other downstream 1259387 35153546 ~ 35173463 (+)

Expression


Co-expression Network