LOC110519284 (LOC106605036)


Basic Information

Item Value
gene id LOC110519284
gene name LOC106605036
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34363003 ~ 34384107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973924.1
CAAAGAGACACAGCTCCCACCGGAGGATGCTGTGTCCTGACATTCCGTCGTCGCATACATCATTCATCAGAGGCACTTTGGGTGCAGCCATGGCGGCGCTCCTTTCACATTTCGATGACGAGTGGCACGATTTTAAGGAATTTGAGCCGGTCTCAGAGCAGGGGACTCGGATGGACCGAGTAAACTTGGTTGCCGAGCAGTTGACAGGCGTTCTGAGGGTCCTTCCAGAGCTCAACAACAGCTTTTCGGGCGAAATAGGCAGCTTCAAGTCCATGGAAGATCTGGTGACTGATTTCGACGAGAAATTGGCAGTGTGTTTCCGAAATGTCAACACCCAAACGGAGAACATTGCCCCTGTAAACATTATCGCCGAGGACACAACGTTGAGGAACGACGAGATCTGGGATGCTCTCGCAGATAATTATGGTAATGTCATGGCAGTGGATTGGAAACAGTCTCGAACgcgctccctccatctccccactCTAATCCTCAAAGACGAACCAAGGGTGGATGATGTAACACTGGAGCTGTCCGACGATGAGCTGAGGGAACAGATGGACATGCACACCATCATCGTCTCCTGCCTCAATGACGAACCCCTCTTCACCGCAGAACAGGTTAttgaggagatagaggagatgaTGCAGGACTCTCCTGACTTGGGGGCAGAGAAGAACCACCCCTCTCAGTCAGATCTCTCCATGCTCTCTCTGGACATCCAGCGCCCCAGAACAAACCACAGCTATGAAGAGCgagagATGACCCTGTGTGTAGCAGAGCTGAATGAGCGACTAGAGGAGGTGGAGATGGCCATCAGACATTACAGTGAGGAGCTGATTCAACACCTGGCCCTCAGGGACGAGCTGGACTTTGAAAAAGAGGTGAAGAACAGCTTCATCTCTATCCTGATAGATGTGCAAAACAGACAGAAGGAACACAGGGAACtactgaagaaaaataaaaaactcaAGAGTGGTGCCGGGGCCCCGCAGGGCCGACCAGAGAGAACACAAGCACTAGGATCATATCTGACCACAGTCATTCCATATGAGAAGAAAGGAGGCCCTCCATCGGTGGAAGATCTTCAGATCCTTACCCAAATCCTGCAAGCTATGAGAGACGACAGTGACAAGGTGCCCAGGCTTCTGACAGACTACATTCTCAAAGTGCTTTGCCCAACATAGAGACTGGAAGGACGATAATGGACATTTTGGAAACGAGGTGAGGGATCTGGTTTCAATGTCAACAAGCAAAATGAAGAGGACTCGGTGTATAAAAAGTAAAAACATAAGCACACTGAATTGATTCTTTAGGATGCATGGTATTTTACCTCAAGTTGCTCCTTTTTGTGTAACACCCCATAGATGTTTTATACCTCATTCAGTTTTATTTTCTCTGTGTTGAGCATGGTGATTTCAGgtattgttttattgtttttaCTTTAAGTGCAGTGTAAAATACAGTACTCAAAGTCATAAGAAAGATACTCATACATTCTAGTGTAGCATCTACTATATGTGGCTGATTTCAACAGACTTTTGGACGATAGGGGAACTTACTTCTTTTGGCCCTGAAGTAAGATCGAAGCTACTCATATCCAAAGGGTTGTGTCTTAATATGATTAACCTAAATCTGAAGGTCTCAGAAACGACTGAGCACGTGTAATATCAGGGATATAGATTTGTTTAAAAGTGCTTCATTAATAAAATAAACCTTGAACTAAATACTAACATTGTTCTACACAACTCAGTCCACCATTTGGCCTCCCTAAAAGCactgcacatacagtgccttgcgaaagtatttggcccccttgaactttgcgaccttttgccacatttcagg
>XM_036973922.1
CAAAGAGACACAGCTCCCACCGGAGGATGCTGTGTCCTGACATTCCGTCGTCGCATACATCATTCATCAGAGGCACTTTGGGTGCAGCCATGGCGGCGCTCCTTTCACATTTCGATGACGAGTGGCACGATTTTAAGGAATTTGAGCCGGTCTCAGAGCAGGGGACTCGGATGGACCGAGTAAACTTGGTTGCCGAGCAGTTGACAGGCGTTCTGAGGGTCCTTCCAGAGCTCAACAACAGCTTTTCGGGCGAAATAGGCAGCTTCAAGTCCATGGAAGATCTGGTGACTGATTTCGACGAGAAATTGGCAGTGTGTTTCCGAAATGTCAACACCCAAACGGAGAACATTGCCCCTGTAAACATTATCGCCGAGGACACAACGTTGAGGAACGACGAGATCTGGGATGCTCTCGCAGATAATTATGGTAATGTCATGGCAGTGGATTGGAAACAGTCTCGAACgcgctccctccatctccccactCTAATCCTCAAAGACGAACCAAGGGTGGATGATGTAACACTGGAGCTGTCCGACGATGAGCTGAGGGAACAGATGGACATGCACACCATCATCGTCTCCTGCCTCAATGACGAACCCCTCTTCACCGCAGAACAGGTTAttgaggagatagaggagatgaTGCAGGACTCTCCTGACTTGGGGGCAGAGAAGAACCACCCCTCTCAGTCAGATCTCTCCATGCTCTCTCTGGACATCCAGCGCCCCAGAACAAACCACAGCTATGAAGAGCgagagATGACCCTGTGTGTAGCAGAGCTGAATGAGCGACTAGAGGAGGTGGAGATGGCCATCAGACATTACAGTGAGGAGCTGATTCAACACCTGGCCCTCAGGGACGAGCTGGACTTTGAAAAAGAGGTGAAGAACAGCTTCATCTCTATCCTGATAGATGTGCAAAACAGACAGAAGGAACACAGGGAACtactgaagaaaaataaaaaactcaAGAGTGGTGCCGGGGCCCCGCAGGGCCGACCAGAGAGAACACAAGCACTAGGATCATATCTGACCACAGTCATTCCATATGAGAAGAAAGGAGGCCCTCCATCGGTGGAAGATCTTCAGATCCTTACCCAAATCCTGCAAGCTATGAGAGACGACAGTGACAAGGTGCCCAGGCTTCTGACAGACTACATTCTCAAAGGTGAATACACTCAGCCTCTCTCTATGTACATTTTAACATTAGTAGGCTATATTACAGGGATGTATGTGTTATTGGCATACTGTTGTCTTTGCATTTTTGTAGAATTCAAGAGCACAACGGTTATTGATAACCGGCTATTTTAGGCTATTTTAAGATAGGCTTTTCTACTGTTTAAGTTGTTGTGCCTTTTCTTTTGTGTGTATGGTACAGGGCAATTTACAGTTGAGTGATCTCCTTTTTCATTTCTTTAAAAACATGTCTCTCCATTCTTCATTTTCTGTTCAATGTCTCGCTGCATTGTACTTGCCAGCTCTGGTGTGAGAGCTGTGGACAGAGAGGTTTGTGGCACACATTCACAGACACTGTACTGTGTAGTGTAGTTCACTCA

Function

NR:

description
fasciculation and elongation protein zeta-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973924.1 False 1848 mRNA 0.46 8 34363003 34384107
XM_036973922.1 True 1558 mRNA 0.48 7 34364247 34384107

Neighbor

gene id symbol gene type direction distance location
klhl32 LOC106605029 coding downstream 34180 34291510 ~ 34328823 (-)
LOC110504035 LOC106581764 coding downstream 114399 34088843 ~ 34248604 (-)
pou3f2b LOC106584047 coding downstream 281308 34078198 ~ 34081695 (-)
LOC110519190 NA coding downstream 316635 34045603 ~ 34046368 (-)
tstd3 hs6b coding downstream 518193 33838962 ~ 33844810 (-)
LOC110519296 LOC106584119 coding upstream 29542 34413649 ~ 34426171 (-)
adcy3a LOC106584132 coding upstream 44476 34428583 ~ 34456802 (-)
LOC110519356 lyplal1 coding upstream 116038 34500145 ~ 34506986 (-)
tgfb2 LOC106584161 coding upstream 192963 34577070 ~ 34613851 (-)
LOC110519379 NA coding upstream 212793 34596900 ~ 34601665 (-)
G249451 NA non-coding downstream 59525 34303111 ~ 34303478 (-)
G249450 NA non-coding downstream 60419 34302155 ~ 34302584 (-)
G249449 NA non-coding downstream 65166 34297607 ~ 34297837 (-)
G249236 NA non-coding downstream 73773 34289006 ~ 34289230 (-)
G249513 NA non-coding upstream 4409 34388516 ~ 34388730 (-)
G249514 NA non-coding upstream 4759 34388866 ~ 34389082 (-)
G249522 NA non-coding upstream 16682 34400789 ~ 34401072 (-)
G249501 NA non-coding upstream 27867 34411974 ~ 34413480 (-)
G249485 LOC106584080 other downstream 3552 34357275 ~ 34359451 (-)
G248239 LOC106605043 other downstream 943296 33419429 ~ 33419707 (-)
LOC110518371 LOC106583543 other downstream 2781801 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 3417160 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 4145414 30211570 ~ 30217682 (-)
G249978 NA other upstream 505399 34889506 ~ 34889954 (-)
G249990 NA other upstream 511851 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 1756005 36140112 ~ 36144572 (-)
G251681 NA other upstream 1973376 36357325 ~ 36357971 (-)
gpatch3 gpatch3 other upstream 2347738 36731832 ~ 36754332 (-)

Expression


Co-expression Network