LOC110519356 (lyplal1)


Basic Information

Item Value
gene id LOC110519356
gene name lyplal1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34500145 ~ 34506986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596492.2
GATTGAGAAAAATGTCCATTCGGAAACAACCTATCGGGAGTTTAGGTTTTGGTCATCTGTAAACTGCATCTATCCAATCACAGAGGCCTGTCCGTCTGCTCTGTAGTCTCGCAAGACACAGAGAAGTCATGGCTGCCGTACCGAGCAGCAAACTTCTAGGCAGGTGTGTTGCATCTCCAACCGGGAAACACTCCGCGTCGGTCATCTTCTTACACGGCTCAGGAGACACTGGACGGGGAGTGCGAGCATGGGTCAAAGAGGTTTCGGTACCAGACCTGGCTTTCCCCCACATCAGAGTGGTATATCCCACAGCTCCAGCCagGCCATACACACCCATGCGGGGGGCTCTGTCCAATGTGTGGTTTGACCGCTACAAGATCTCACACGACTGCCTGGAGCACTTGGAGTCTATAGACGCCATGGCCAACTCCTTGGGAGCGGTTATACAGGAGGAGATCAGGGCAGGAGTACCAAAACACAGGATGATCATAGGGGGTTTTTCTATGGGCGGAGCTATGGCCCTCCACCTGGCGTGCCGTTATCACCCTGAAGTAGCAGGAGTCTTTGCTCTGTCCAGCTTTCTCAACAAAGACTCTGTAGTATATCAGGCTGTGGAGGAGCGGGCAAGGGCGGGGAGCCCCCTCCCTGAGCTATTCCAGGGCCATGGGACAGGAGACGAGTTGGTGTTCCATAAGTGGGGAGAAGAAACTACGGCCCTGCTGAAGAAGGCTGGGATGACAACCACCTTCCACTCGTTCCCAGGCCTCCAGCACCAGCTCTCCCGGCCAGAGATTGAGCTACTGCGCTCCTGGATCCTCACCAAGCTGCGCCCGGACAGTCTAGACGCCAGTGGGCAGTGACCAGTCAGCCCCACACCACTAAACAGACACATTAACAACACGCTattaacatgttaataacacgtTCACACTATTAAGCTGCTTTAAAATGAGCCAAACCAAACGGTACTGCGCTGGCCTGGTAAAGCATTGCCCATAGTTTCTGGAACAAAGCTGGAAAAGCGAGCCAGCACGGTCAGGTCGGTACTATAGTGTGAAAAGGATATTAACATGCTGAGTGGGCTGTGGAACACCTCCTCACAACCTCTGTTGGACACAATACCGCTTTTTAAAATATGTgtcaataaatgttttgtttttttgcttgGACACTGTCAGTTGTGCTTGCTTAGTGTCCTCAACAGCTGTGTGGTTCCCTTCAAAAGAGAACATGTGATAGTTGAGTGTGCTTATAACCACTCCCTCTGCACTTGTACAGTCTCCACTCTTAACGCTTCAGCCTCGTCTGTCTAACTCTGATAGGATATGGGAGCATGCTCTGCCTCCACCCCTATCGTTTAACTAACACTAGAGTCAATTTAGTACCGTTGCTGTAGAGAGAACAGGAATTGTTTAGTCAATCTTGctcgctgtttttttttttatacaccaTTATCGTTTTGCGCTGGGGAATGTGTTGAACATGTGTGGGGATGGAGGGAGCGGAGGTCTGTTCTGTTTGCTCAGTAGTTCTGCTCCGTAGCACACATCGCCTCATTGATAGTTATTGGGAAGAAGCAGTTAGCTATTCTTCCCTTCTTCCTACCTGCAGCCTTTCTCTCGGCGTTGTGCTTAAGGTAGTCCGGATGCTGGGCTGCCTTCACTAGTGTAGGGCTGCAGGCCAGGGTCAGAACACAGGAAGATCATGAGTGAGCAGTAGTAACACTTAGGTGCCAAACATAATGAGTTATGGAAATGATTCACGTTTCTTGTGTAGTCCTGGCTATAAATTAAACATCTGTCAACATCA

Function

symbol description
lyplal1 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLAL1 (lysophospholipase like 1).

NR:

description
lysophospholipase-like protein 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K06999 K06999; phospholipase/carboxylesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596492.2 True 1809 mRNA 0.50 5 34500145 34506986

Neighbor

gene id symbol gene type direction distance location
adcy3a LOC106584132 coding downstream 43343 34428583 ~ 34456802 (-)
LOC110519296 LOC106584119 coding downstream 73974 34413649 ~ 34426171 (-)
LOC110519284 LOC106605036 coding downstream 116038 34363003 ~ 34384107 (-)
klhl32 LOC106605029 coding downstream 171322 34291510 ~ 34328823 (-)
LOC110504035 LOC106581764 coding downstream 251541 34088843 ~ 34248604 (-)
tgfb2 LOC106584161 coding upstream 70084 34577070 ~ 34613851 (-)
LOC110519379 NA coding upstream 89914 34596900 ~ 34601665 (-)
LOC110519387 LOC106584165 coding upstream 109746 34616732 ~ 34629879 (-)
LOC110505217 NA coding upstream 146898 34653884 ~ 34656290 (-)
vegf vegf coding upstream 307893 34814879 ~ 34831228 (-)
G249558 NA non-coding downstream 12149 34487752 ~ 34487996 (-)
G249556 NA non-coding downstream 13406 34486532 ~ 34486739 (-)
G249553 NA non-coding downstream 16878 34483030 ~ 34483267 (-)
G249547 NA non-coding downstream 24648 34475178 ~ 34475497 (-)
G249546 NA non-coding downstream 26598 34473246 ~ 34473547 (-)
G249563 NA non-coding upstream 339 34507325 ~ 34507552 (-)
G249569 NA non-coding upstream 8815 34515801 ~ 34516024 (-)
G249573 NA non-coding upstream 16699 34523685 ~ 34524305 (-)
G249598 NA non-coding upstream 50850 34557836 ~ 34558246 (-)
G249606 NA non-coding upstream 67260 34574246 ~ 34574605 (-)
G249485 LOC106584080 other downstream 140694 34357275 ~ 34359451 (-)
G248239 LOC106605043 other downstream 1080438 33419429 ~ 33419707 (-)
LOC110518371 LOC106583543 other downstream 2918943 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 3554302 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 4282556 30211570 ~ 30217682 (-)
G249978 NA other upstream 382520 34889506 ~ 34889954 (-)
G249990 NA other upstream 388972 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 1633126 36140112 ~ 36144572 (-)
G251681 NA other upstream 1850497 36357325 ~ 36357971 (-)
gpatch3 gpatch3 other upstream 2224859 36731832 ~ 36754332 (-)

Expression


Co-expression Network