LOC110519579 (gmeb1)


Basic Information

Item Value
gene id LOC110519579
gene name gmeb1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35203647 ~ 35221874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973943.1
GTGCGAACAACCGCTTCTCGTGACAGTAGGACAGATGCTTCTCACAGGCAAATACTGCCTTCGTTGCAGGAAGTGTAGCGAAGCAGCAGTACAGCGCATGTTCTGAGAACTCTCTGCAAGCAAATGATGAATTCTCTGCAGTGAAACGCAGTCCAGGGAGTGGTCATGGCGAGTGCTGAGATCACAGTGTCCTCAAGAAACATAGTGatggtgaaggaagaggaggaggaaggggagcacTGTGAGAGCCGCAAGACTCAGGTCATCCTCCATCTGCAGCCCATCATACAGGGGGCAAATGAGGACAACGCTGACACTGGCTCTACTGTTCTAGCCATAGAGACGCATCATGAAGACAATCTTGCGGAGGGTGAGGAGGTTGAGTATGGATACCCCATCACCTGTGGCGAAAGCAAAGCAGTCCTCCTGTTTAAGAAGTTTGTCTGCCCTGGCATCAACATCAGATGTGTCAAGTTCAATGACCAGCTGATCAGCCCCAAGCAGTTTGTTCACATGGCAGGGAAAGCCACTCTGAAGGACTGGAAGAGGGCCATCCGACTGGGAGGGGTGATGCTCAGGAAAATGATGGACTCAGGTCAGATTGACTTCTACCAGCATGACACAGTGTGCACCAACACCTGCCGCAGCACTAAGTTTGACGTGTTGATCAACAGCACCCGCTTCCTTCCGGGCAGCGCCATGCAGCACCCCCCTTCCCCTCTGCCAAtAGATGGAGGCCATGCTGCAGTGTCAGATGACAGGCTAGAGGAGAAGGCCTACACTACAGTGGAGTGGAGCCCTGGGCCAGCTCCTCCCATCACCAGCACAGCCAATGGACATGTCAAGAGGAAAAGGGGTGACATCATCCCTGATGGCAGTCTAAGCTTTTGGAGAGGCATAGCAGACGTTGGCCTGATGGGGGAGGTGTTATCCAGTTTCCGCACAGAACTGGTGGCCATGTTGAGAGGAGTGGAGGTCCGCAGTGAGAAGGCCATTTTGCAAGAAGCCGATGCGGTTGTGCTGAACTCCCTTTCTGCGATGTTTGGGCTGCTGGACTCAGTGAGGAGGGTTCTGGACCTGAGACGCAGTGAGACTGATGACAACCAGCAGCAGGTCCACAATGCTCTTAATGTGCTGGAGGACCAGTTGGAGGACCAGAGGAAGCAGAGGCAGGATGAGCCCCCACCCAGCCCTGGTCACCTCTACATGGGCAGCTTCTCCAAGGCCACCCCCTCAAAGTGCCCGCGGCTGCATCCCTCTAGCTCTTCCACCACCCAGCCTCAGAACCAGACCACACAATCGTCTATCGTCTTATCTCCCATTACcacatccccagtgggtcagcCTCTCAATGTGGCCGGCTTGCCTGTGGCCACACTGGCCCAACTCCCCACTGGCTCCCAGCTCTTCACCCACTACACCACTGGCAACACCTCTGCAGGAAAGAGAGGCAGAGCCAGGTCTGTGGCTCTCCATGCAGCCTCCAGGGTGACTGTGCTCAACACAACCACAGAGTCATGGGTAGGGACCCCTCTACAGGCGCTTCATCTAACCCAGAAGAAGGAGCAGGACTCTGGGGACAAGGAGAGCCAgagactgggggaggagaggatagtaCTTGTGCAGCAGGGGGTACTACTGGACACTCCAGGGATTCAGACACACTTTGCTGGGAACAGTGGGGGCTCAATCAGagatggaggaaaagggggaggaacAGGGGAGGGACAGGAGAGTGAAGGTACAGAAGGAAGGGTTGCATAATGTAGAGTATAATGTAGAGTCTTTGGCAGGAACAGGGCATTAAAAGAATGTAAAGccaagtgagagaagagagaaccgTAAGGAATACAGTTGAAAGAgaatagagtgagtgagtgagtcagcgagcgagtgtgtgtgtgtgacagtgtgtctgtgtggaagaGAGCAAGAAGGTGAACTTCGCCATGTCATGTCATGTGTAGCGCCACACAGATTTTAGGCTATATGTGTTTTAGGCTATATGTGTTTTAGGCTACATGTGTTTTAGGCTACATGTGTTTtaggctatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataa
>XM_036973944.1
GGACAGATGCTTCTCACAGGCAAATACTGCCTTCGTTGCAGGAAGTGTAGCGAAGCAGCAGTACAGCGCATGTTCTGAGAACTCTCTGCAAGCAAATGATGAATTCTCTGCAGTGAAACGTCCAGGGAGTGGTCATGGCGAGTGCTGAGATCACAGTGTCCTCAAGAAACATAGTGatggtgaaggaagaggaggaggaaggggagcacTGTGAGAGCCGCAAGACTCAGGTCATCCTCCATCTGCAGCCCATCATACAGGGGGCAAATGAGGACAACGCTGACACTGGCTCTACTGTTCTAGCCATAGAGACGCATCATGAAGACAATCTTGCGGAGGGTGAGGAGGTTGAGTATGGATACCCCATCACCTGTGGCGAAAGCAAAGCAGTCCTCCTGTTTAAGAAGTTTGTCTGCCCTGGCATCAACATCAGATGTGTCAAGTTCAATGACCAGCTGATCAGCCCCAAGCAGTTTGTTCACATGGCAGGGAAAGCCACTCTGAAGGACTGGAAGAGGGCCATCCGACTGGGAGGGGTGATGCTCAGGAAAATGATGGACTCAGGTCAGATTGACTTCTACCAGCATGACACAGTGTGCACCAACACCTGCCGCAGCACTAAGTTTGACGTGTTGATCAACAGCACCCGCTTCCTTCCGGGCAGCGCCATGCAGCACCCCCCTTCCCCTCTGCCAAtAGATGGAGGCCATGCTGCAGTGTCAGATGACAGGCTAGAGGAGAAGGCCTACACTACAGTGGAGTGGAGCCCTGGGCCAGCTCCTCCCATCACCAGCACAGCCAATGGACATGTCAAGAGGAAAAGGGGTGACATCATCCCTGATGGCAGTCTAAGCTTTTGGAGAGGCATAGCAGACGTTGGCCTGATGGGGGAGGTGTTATCCAGTTTCCGCACAGAACTGGTGGCCATGTTGAGAGGAGTGGAGGTCCGCAGTGAGAAGGCCATTTTGCAAGAAGCCGATGCGGTTGTGCTGAACTCCCTTTCTGCGATGTTTGGGCTGCTGGACTCAGTGAGGAGGGTTCTGGACCTGAGACGCAGTGAGACTGATGACAACCAGCAGCAGGTCCACAATGCTCTTAATGTGCTGGAGGACCAGTTGGAGGACCAGAGGAAGCAGAGGCAGGATGAGCCCCCACCCAGCCCTGGTCACCTCTACATGGGCAGCTTCTCCAAGGCCACCCCCTCAAAGTGCCCGCGGCTGCATCCCTCTAGCTCTTCCACCACCCAGCCTCAGAACCAGACCACACAATCGTCTATCGTCTTATCTCCCATTACcacatccccagtgggtcagcCTCTCAATGTGGCCGGCTTGCCTGTGGCCACACTGGCCCAACTCCCCACTGGCTCCCAGCTCTTCACCCACTACACCACTGGCAACACCTCTGCAGGAAAGAGAGGCAGAGCCAGGTCTGTGGCTCTCCATGCAGCCTCCAGGGTGACTGTGCTCAACACAACCACAGAGTCATGGGTAGGGACCCCTCTACAGGCGCTTCATCTAACCCAGAAGAAGGAGCAGGACTCTGGGGACAAGGAGAGCCAgagactgggggaggagaggatagtaCTTGTGCAGCAGGGGGTACTACTGGACACTCCAGGGATTCAGACACACTTTGCTGGGAACAGTGGGGGCTCAATCAGagatggaggaaaagggggaggaacAGGGGAGGGACAGGAGAGTGAAGGTACAGAAGGAAGGGTTGCATAATGTAGAGTATAATGTAGAGTCTTTGGCAGGAACAGGGCATTAAAAGAATGTAAAGccaagtgagagaagagagaaccgTAAGGAATACAGTTGAAAGAgaatagagtgagtgagtgagtcagcgagcgagtgtgtgtgtgtgacagtgtgtctgtgtggaagaGAGCAAGAAGGTGAACTTCGCCATGTCATGTCATGTGTAGCGCCACACAGATTTTAGGCTATATGTGTTTTAGGCTATATGTGTTTTAGGCTACATGTGTTTTAGGCTACATGTGTTTtaggctatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataa
>TU285526
tgtcaagttggctggatgtcctttgggttgtggaccattcttggtacacacgggaaactgttgagcactTGTACTCAGTGTATTTAGCAGGTTTATATAGAGGCAGGTGGATTGGCAAGAGTTTCGTAGACCAAAATTAGAATTGGGGATTGGTTAATTTGTTGGACTGATTTATTTGAATTGCCTGTCTATTTGTTGTTACTGTAATGTGTTTTGTCGTGTCAGATGCGGTTGTGCTGAACTCCCTTTCTGCGATGTTTGGGCTGCTGGACTCAGTGAGGAGGGTTCTGGACCTGAGACGCAGTGAGACTGATGACAACCAGCAGCAGGTCCACAATGCTCTTAATGTGCTGGAGGACCAGTTGGAGGACCAGAGGAAGCAGAGGCAGGATGAGCCCCCACCCAGCCCTGGTCACCTCTACATGGGCAGCTTCTCCAAGGCCACCCCCTCAAAGTGCCCGCGGCTGCATCCCTCTAGCTCTTCCACCACCCAGCCTCAGAACCAGACCACACAATCGTCTATCGTCTTATCTCCCATTACcacatccccagtgggtcagcCTCTCAATGTGGCCGGCTTGCCTGTGGCCACACTGGCCCAACTCCCCACTGGCTCCCAGCTCTTCACCCACTACACCACTGGCAACACCTCTGCAGGAAAGAGAGGCAGAGCCAGGTCTGTGGCTCTCCATGCAGCCTCCAGGGTGACTGTGCTCAACACAACCACAGAGTCATGGGTAGGGACCCCTCTACAGGCGCTTCATCTAACCCAGAAGAAGGAGCAGGACTCTGGGGACAAGGAGAGCCAgagactgggggaggagaggatagtaCTTGTGCAGCAGGGG

Function

symbol description
gmeb1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human GMEB1 (glucocorticoid modulatory element binding protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973943.1 False 2134 mRNA 0.53 10 35203647 35221874
XM_036973944.1 False 2103 mRNA 0.53 10 35203675 35221874
TU285526 True 848 TUCP 0.54 2 35219832 35221372
Loading

Neighbor

gene id symbol gene type direction distance location
rab42b rab42 coding upstream 33383 35153546 ~ 35173463 (+)
ctps1b LOC106584221 coding upstream 50645 35119706 ~ 35153002 (+)
LOC110519409 scmh1 coding upstream 165278 34991023 ~ 35038369 (+)
LOC110504041 LOC106605016 coding upstream 527672 34671886 ~ 34707455 (+)
LOC118944510 NA coding upstream 536793 34665596 ~ 34666854 (+)
ptprub ptpru coding downstream 36221 35258095 ~ 35611096 (+)
serinc2l LOC106584332 coding downstream 903453 36125327 ~ 36144587 (+)
LOC110519702 LOC106584341 coding downstream 950319 36172193 ~ 36262289 (+)
LOC110519762 LOC106584688 coding downstream 1071950 36293824 ~ 36301569 (+)
phactr4b LOC106584362 coding downstream 1095439 36317313 ~ 36368316 (+)
G250160 NA non-coding upstream 143165 35060255 ~ 35060482 (+)
G250159 NA non-coding upstream 143632 35059799 ~ 35060015 (+)
G250158 NA non-coding upstream 143907 35059526 ~ 35059740 (+)
G250150 NA non-coding upstream 157146 35046146 ~ 35046501 (+)
G250029 NA non-coding upstream 220724 34968858 ~ 34982923 (+)
G250398 NA non-coding downstream 39336 35261210 ~ 35261419 (+)
G250401 NA non-coding downstream 42534 35264408 ~ 35264638 (+)
G250404 NA non-coding downstream 44260 35266134 ~ 35266436 (+)
G250405 LOC106584099 non-coding downstream 45790 35267664 ~ 35267944 (+)
G250408 NA non-coding downstream 50019 35271893 ~ 35272185 (+)
G249323 NA other upstream 783035 34419890 ~ 34420612 (+)
G249245 NA other upstream 900740 34302572 ~ 34302907 (+)
G248795 NA other upstream 1190590 34006158 ~ 34013057 (+)
G248794 NA other upstream 1225812 33974476 ~ 33977835 (+)
G251773 NA other downstream 1289700 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 1401736 36623610 ~ 36627542 (+)
G253299 NA other downstream 2505074 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 2870448 38092322 ~ 38092734 (+)
G254204 NA other downstream 3219292 38441166 ~ 38441734 (+)

Expression

LOC110519579(gmeb1) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110519579(gmeb1) Expression in each Bioproject

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LOC110519579(gmeb1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network