stmn1b (LOC106584327)


Basic Information

Item Value
gene id stmn1b
gene name LOC106584327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36112187 ~ 36117544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973959.1
gccagctacGCAGCGCATGACTCTGGGGATGGAGACTAGGTGGGAGTGATCACACTGTGCCTCGGTCTTGCGCTTTTTCTCAATTCCTATGTCGACGATTAAACATTGACTTTCGACAACCACTATGGACAAATCGCTGTGCTTTAACTTACATGTGAAGAGGGGTTTCAGtctgcagtagctagctagctaatatattCAGGTTGTCTGCCAGTGTCTGTGCCGAGTGTGCTGAGCTGACAGTGTAGCCGAGTCCATTGTCTCCTCAGCACCAGTTTGCTATTCGTGCAATTTTCAGGCAAAGCAACCCTCAGTACTCTGCTGAAATGGCGTCCTCTGGAGCGATCCTGGTCAAGGAGTTGGACAAGCGTGCTTCAGGTCAAGCATTTGAGGTAATCTTGGCCCCCGATGCCAAGGGTGAAATCCCCCTACCTCCCccaaaggagaagaaggagatgTCACTAGAGGAAATCCAGAAGAAACTGGAGGCTGCAGAGGAGAGACGCAAGAGTCATGAAGCAGAGGTGCTGAAGCACTTAGCTGAGAAGAGAGAGCACGAGAAGGAAGTTCTGAAGAAAGCCATGGAAGAGAACAACAACTTCAGTAAGACAGCAGAGGAGAAGCTCAATCAGAAGATGGAAGCCAACAAAGAGAATCGCACGGCACGAATGGCAGCTCTCAATGAGAAATTCAAAGAGAAGGATAAGAAGCTTGAGGAGGTACGAAAGGCCAAGGAAACAAAACCAGAGGGGGAGAACTGATTTTCttttgtaataataataaaaaaacatatcTTTTTGTTCTGTTCATTGACAGTATTATATTTTTCATTGTTATAGTTTTGTTCACCTTGTTAGGATTAGTTAGGCCGTCCATTGTTGCTTTTGTTGTGGATGTGTAAGTATTTCTTCCCCCACCTCCAGTAGATGTGTTATTTGTAGCTTATGACCTTTGAAATAAGCAGTGTTTTTACCTATAAGGAAGCATGCCACTGTTAGACATCGGTCCTTAACATTGTGAATTGCATAATGTAAGTAAATCCTTGTACCTTGTAAAACTGCGTTATCTGAGCTTAATAAAGTTGCAATTGTTCTTCAAAACCTC
>XM_036973958.1
ACTTCcagacaaatgagagaacacctcactctgaacattttacttgccctagcagagctagttaggctgttttcatgctaTCTAGAGCGttagtgactaactgtgctgctagcAACAATTGAATTCCATTTTCTGCCAACCTTTACTGACACCTGTCATATTCAACGGTGTTGCGCGTTCGTAAATTAATCAGTTACTCTTGTGCTCTGGTACACTCAAACGTGAGCGTTTTGGAAATCGGAGTAGACTGCCAAAAGTAATCTACGAATGCACGCTAAATCGACATTATTGATTGGACGATTAGGACCAATGGGAGTAGAGAACGAGATGTGACGAGTTAACTTTAGTGCTTCGGTTCTTTTTGTTGTTGCCGAACGGTGCTGAGGCAGGCAGTGAAGAAGGCGCGACCACACCACCTTTTCAGCATTTGAAGGCAAAGCAACCCTCAGTACTCTGCTGAAATGGCGTCCTCTGGAGCGATCCTGGTCAAGGAGTTGGACAAGCGTGCTTCAGGTCAAGCATTTGAGGTAATCTTGGCCCCCGATGCCAAGGGTGAAATCCCCCTACCTCCCccaaaggagaagaaggagatgTCACTAGAGGAAATCCAGAAGAAACTGGAGGCTGCAGAGGAGAGACGCAAGAGTCATGAAGCAGAGGTGCTGAAGCACTTAGCTGAGAAGAGAGAGCACGAGAAGGAAGTTCTGAAGAAAGCCATGGAAGAGAACAACAACTTCAGTAAGACAGCAGAGGAGAAGCTCAATCAGAAGATGGAAGCCAACAAAGAGAATCGCACGGCACGAATGGCAGCTCTCAATGAGAAATTCAAAGAGAAGGATAAGAAGCTTGAGGAGGTACGAAAGGCCAAGGAAACAAAACCAGAGGGGGAGAACTGATTTTCttttgtaataataataaaaaaacatatcTTTTTGTTCTGTTCATTGACAGTATTATATTTTTCATTGTTATAGTTTTGTTCACCTTGTTAGGATTAGTTAGGCCGTCCATTGTTGCTTTTGTTGTGGATGTGTAAGTATTTCTTCCCCCACCTCCAGTAGATGTGTTATTTGTAGCTTATGACCTTTGAAATAAGCAGTGTTTTTACCTATAAGGAAGCATGCCACTGTTAGACATCGGTCCTTAACATTGTGAATTGCATAATGTAAGTAAATCCTTGTACCTTGTAAAACTGCGTTATCTGAGCTTAATAAAGTTGCAATTGTTCTTCAAAACCTC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973959.1 False 1104 mRNA 0.44 5 36112187 36116920
XM_036973958.1 True 1239 mRNA 0.43 5 36112187 36117544

Neighbor

gene id symbol gene type direction distance location
LOC110519653 LOC106584320 coding downstream 2998 36102843 ~ 36109194 (-)
si:dkey-34d22.1 LOC106584244 coding downstream 909244 35175483 ~ 35202943 (-)
taf12 taf12 coding downstream 936923 35169845 ~ 35175264 (-)
LOC118944512 NA coding downstream 1021794 35089126 ~ 35090393 (-)
cited4b LOC106584212 coding downstream 1059906 35049466 ~ 35052281 (-)
LOC110519907 oprd1 coding upstream 318837 36436381 ~ 36437754 (-)
LOC110504056 NA coding upstream 369331 36486875 ~ 36505339 (-)
tent5ba fam46b coding upstream 426626 36544170 ~ 36568553 (-)
zdhhc18a zdhhc18 coding upstream 494271 36611815 ~ 36629130 (-)
LOC110519930 LOC106584694 coding upstream 518785 36636329 ~ 36643205 (-)
G251384 NA non-coding downstream 108180 35943286 ~ 36004007 (-)
G251075 NA non-coding downstream 225976 35885990 ~ 35886211 (-)
G251074 NA non-coding downstream 227102 35884397 ~ 35885085 (-)
G251073 NA non-coding downstream 229087 35882721 ~ 35883100 (-)
G251498 NA non-coding upstream 2131 36119675 ~ 36119874 (-)
G251499 NA non-coding upstream 4936 36122480 ~ 36122800 (-)
G251500 NA non-coding upstream 5695 36123239 ~ 36123626 (-)
G251501 NA non-coding upstream 6144 36123688 ~ 36123908 (-)
G251502 NA non-coding upstream 6843 36124387 ~ 36124675 (-)
G249990 NA other downstream 1215891 34895958 ~ 34896296 (-)
G249978 NA other downstream 1222233 34889506 ~ 34889954 (-)
G249485 LOC106584080 other downstream 1752736 34357275 ~ 34359451 (-)
G248239 LOC106605043 other downstream 2692480 33419429 ~ 33419707 (-)
LOC110518371 LOC106583543 other downstream 4530985 31562384 ~ 31631107 (-)
G251462 LOC106584332 other upstream 22568 36140112 ~ 36144572 (-)
G251681 NA other upstream 239939 36357325 ~ 36357971 (-)
gpatch3 gpatch3 other upstream 614301 36731832 ~ 36754332 (-)
LOC110519955 LOC106586057 other upstream 3281717 39399261 ~ 39508811 (-)
G255911 NA other upstream 3527027 39644571 ~ 39645743 (-)

Expression


Co-expression Network