Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110519702 |
| gene name | LOC106584341 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 36172193 ~ 36262289 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021596673.2 | False | 7812 | mRNA | 0.56 | 7 | 36172193 | 36261967 |
| XM_021596688.2 | False | 7800 | mRNA | 0.56 | 7 | 36172193 | 36261967 |
| XM_021596696.2 | False | 7297 | mRNA | 0.55 | 7 | 36172193 | 36261967 |
| XM_021596700.2 | False | 7285 | mRNA | 0.55 | 7 | 36172193 | 36261967 |
| XM_021596677.2 | False | 7805 | mRNA | 0.55 | 7 | 36229406 | 36261967 |
| XM_021596680.2 | False | 7863 | mRNA | 0.55 | 7 | 36235175 | 36261967 |
| TU286459 | True | 779 | lncRNA | 0.30 | 1 | 36261511 | 36262289 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| serinc2l | LOC106584332 | coding | upstream | 27606 | 36125327 ~ 36144587 (+) |
| ptprub | ptpru | coding | upstream | 561097 | 35258095 ~ 35611096 (+) |
| LOC110519579 | gmeb1 | coding | upstream | 950319 | 35203647 ~ 35221874 (+) |
| rab42b | rab42 | coding | upstream | 1001929 | 35153546 ~ 35173463 (+) |
| ctps1b | LOC106584221 | coding | upstream | 1019191 | 35119706 ~ 35153002 (+) |
| LOC110519762 | LOC106584688 | coding | downstream | 31857 | 36293824 ~ 36301569 (+) |
| phactr4b | LOC106584362 | coding | downstream | 55346 | 36317313 ~ 36368316 (+) |
| rcc1 | rcc1 | coding | downstream | 119503 | 36381470 ~ 36387216 (+) |
| LOC110519932 | LOC106591969 | coding | downstream | 395500 | 36657467 ~ 36659553 (+) |
| LOC110519936 | LOC106586041 | coding | downstream | 1157139 | 37419106 ~ 37424336 (+) |
| G251240 | NA | non-coding | upstream | 3901 | 36168033 ~ 36168292 (+) |
| G251238 | NA | non-coding | upstream | 5247 | 36166650 ~ 36166946 (+) |
| G251231 | NA | non-coding | upstream | 12906 | 36158884 ~ 36159287 (+) |
| G251232 | NA | non-coding | upstream | 13524 | 36158048 ~ 36158669 (+) |
| G251211 | NA | non-coding | upstream | 49386 | 36122563 ~ 36122807 (+) |
| G251323 | NA | non-coding | downstream | 54419 | 36316386 ~ 36316620 (+) |
| G251325 | NA | non-coding | downstream | 63768 | 36325735 ~ 36326020 (+) |
| G251329 | NA | non-coding | downstream | 67754 | 36329721 ~ 36330039 (+) |
| G251334 | NA | non-coding | downstream | 73403 | 36335370 ~ 36335580 (+) |
| G249323 | NA | other | upstream | 1751581 | 34419890 ~ 34420612 (+) |
| G249245 | NA | other | upstream | 1869286 | 34302572 ~ 34302907 (+) |
| G248795 | NA | other | upstream | 2159136 | 34006158 ~ 34013057 (+) |
| G251773 | NA | other | downstream | 249607 | 36511574 ~ 36579307 (+) |
| G251845 | zdhhc18 | other | downstream | 361643 | 36623610 ~ 36627542 (+) |
| G253299 | NA | other | downstream | 1464981 | 37726948 ~ 37727338 (+) |
| G253834 | LOC100136012 | other | downstream | 1830355 | 38092322 ~ 38092734 (+) |
| G254204 | NA | other | downstream | 2179199 | 38441166 ~ 38441734 (+) |
| G251254 | NA | non-coding | upstream | 46034 | 36215199 ~ 36215477 (+) |
| G251246 | NA | non-coding | upstream | 58861 | 36202324 ~ 36202650 (+) |
| G251247 | NA | non-coding | upstream | 60779 | 36200387 ~ 36200732 (+) |
