LOC110519762 (LOC106584688)


Basic Information

Item Value
gene id LOC110519762
gene name LOC106584688
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36293824 ~ 36301569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596703.2
AGACAAACAAGCAAGCAGCAAAGCAGAAGACAGCTGGGATAATTTGCCAAAGCGCATTTAAGGGTATTATACTTCACCATGAGCTCTACAAACAGACCAACAGCAACCATGTCAGCACACGCCAGCCTGCTCCTTCTCATCaccgtgtgtgtgtccatgcaggaAGGTTTTGGACATCCACTGTCAGAGAGGCCTAAGTCCAGTGATCTGGCTCCACCTCACAGAGTGCGGACCAAACGCTGTGCCTGCAACAACCAGCTGGACTCTGAATGCCACTACTTTTGCCATCTTGACATCATCTGGGTCAACACACCAAGTAAGACCACTGTTTACGGCTTGGGCAGCCCTCTGTCACGTCGCCGTAAGTCTGccggtccctgtgtgtgtgcggACTCTGACGACCACACCTGCACCAGCTTCTGTCTGGACAGCTCAGATAACTCTTCACCCCAGACTGCCATTAAGAGCTCCCGTGCCAACCTGTTGACTTTCCTTAGATCTATGGTCAGAGCCTCTGAGAGAACCAGGGGATGGGCTTTCCCACCCAGGAAGGAAGCAACCAGGGCCCCTGGGCTTGATGAGCGCTAAACGACATGGCATGGCAGACAGAGTGAGAAGAGAAGAGCGAGTACCAGAACAAATTACACTACTCTAACATGGAGAGGAGCAGAAAAAGGGCTGCTGGTAGAGAGATGTGTCACATGCAGGAAGGCCACAGACCGGTGGGACTGCCTGTTTGTTTGTCGGTTTGTACCCATAAATAGAGGTTGGAAAACAAAATGTGACAGAGGCCTGAAGACAGAGAATAGATGCTAGATCTATCTTGAGGGATGGATCAGGCATGATGCATACAGGCTATTTGTGCAGCAAAATATTTATGTTAGGGGCAGGAGGGACAAGAGTGGTCCATGCTACTGGCAGACTCTGGCCAGGTAGCCGTAAAGGAGAGAACACTTGATGTGTGTAGGCTGGTTGTCTGTGTTCAAAACAGTGGCAGACCATTGCTGTCATGATGGAAAGAACGTGACAGGGAGAATATGACTGACAGGCTACTGATACGATCATCAAAATGATGTATGAGAGAACCAGTGTTTTACTCTTTCTTTTGCAAACATATTTAATCTCTCCATTATTTGATTGTATAATAACAACATATTATGATTGCTATGCAGGTTATTCACCAGGGGAAATGACTGAGGTCATTTAAAGGTGCAATGTTTAGGATTATACACTTAGTGTACTTAACATTAAGAATacatttctaatattgagttgtaaagttgactggatgtcttttgggtggtgggccattcttgatacacatgggaaactgttgagcgtgaaaatcgCAGCAGTGTTACAGTTCTTGATACAAACCGGTgagcttggcacctactaccataccccgttcaaaggcacttaagtcttgcccattcaccctctaactGGCACACATatataatccatgtctcaaa

Function

NR:

description
endothelin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596703.2 True 1475 mRNA 0.47 5 36293824 36301569

Neighbor

gene id symbol gene type direction distance location
LOC110519702 LOC106584341 coding upstream 31857 36172193 ~ 36262289 (+)
serinc2l LOC106584332 coding upstream 149237 36125327 ~ 36144587 (+)
ptprub ptpru coding upstream 682728 35258095 ~ 35611096 (+)
LOC110519579 gmeb1 coding upstream 1071950 35203647 ~ 35221874 (+)
rab42b rab42 coding upstream 1123560 35153546 ~ 35173463 (+)
phactr4b LOC106584362 coding downstream 15744 36317313 ~ 36368316 (+)
rcc1 rcc1 coding downstream 79901 36381470 ~ 36387216 (+)
LOC110519932 LOC106591969 coding downstream 355898 36657467 ~ 36659553 (+)
LOC110519936 LOC106586041 coding downstream 1117537 37419106 ~ 37424336 (+)
LOC110519939 LOC106604981 coding downstream 1184014 37428004 ~ 37489579 (+)
G251254 NA non-coding upstream 78347 36215199 ~ 36215477 (+)
G251246 NA non-coding upstream 91174 36202324 ~ 36202650 (+)
G251247 NA non-coding upstream 93092 36200387 ~ 36200732 (+)
G251240 NA non-coding upstream 125532 36168033 ~ 36168292 (+)
G251323 NA non-coding downstream 14817 36316386 ~ 36316620 (+)
G251325 NA non-coding downstream 24166 36325735 ~ 36326020 (+)
G251329 NA non-coding downstream 28152 36329721 ~ 36330039 (+)
G251334 NA non-coding downstream 33801 36335370 ~ 36335580 (+)
G249323 NA other upstream 1873212 34419890 ~ 34420612 (+)
G249245 NA other upstream 1990917 34302572 ~ 34302907 (+)
G248795 NA other upstream 2280767 34006158 ~ 34013057 (+)
G251773 NA other downstream 210005 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 322041 36623610 ~ 36627542 (+)
G253299 NA other downstream 1425379 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 1790753 38092322 ~ 38092734 (+)
G254204 NA other downstream 2139597 38441166 ~ 38441734 (+)

Expression


Co-expression Network