rcc1 (rcc1)


Basic Information

Item Value
gene id rcc1
gene name rcc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36381470 ~ 36387216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596759.2
TGATCAGACTGACCGCCAATGCAGCATAATCGATTCTGATTCTGTTTGTAGTTGATATGTGTGCAAGTTCAACATTTACCTTTTGCTACTATTTCTGTCAAGTCTACCTATACAATTTGATGCATACGTTAAGACTGTTTTCGTTTTTACTAAACAGTGCGTTCTAAATAGTACATACGGTGTATTGGCAAGACAGATTTCTAACATGACCACTGTCTCTTTAAAAAATTGACGGTGCGTGGTCTGTGTAGAACAGTTGCAGACTGGGATAGCTTACAGTAACACGCACACTGAACCAGTGTGGCTTCATCTCTGTCAGCTACCAAAGTGATCCACGGTACAGGGTCTGTTGTAGCCATGTCTGCAAAGAAGGCTCTTAAGAGACATAAGGAAAGTAAACCAGAGGAAGTAAAGGATCCTAAGAAAGTTAAAGTTTCCCACAGCAGCTATGGGCAGGAGAAGGGTCTGGTTCTAGTGCTGGGCCAAGGGGACGTAGGACAGCTGGGTCTGGGAGAGGACATCATGGAGAGGAAGAGGCCGGCCCTGGTGACCCTGCCTGAGGGTGTGGTGCAGGTGGCGGCGGGGGGCATGCACACAGTCTGTCTCAGTGACACTGGATATATCTACACGTTTGGCTGCAATGACGAGGGTGCTCTGGGTCGAGAGACTACAGAGGAGGGCTCCGAGATGGTGCCAGGAAAGGTGGCCCTGAACGAGAGGGTGGTTCAGGTGTCTGCTGGGGACAGTCACACAGCTGCACTCACAGACGACGGCGCAGTATACATCTGGGGCTCTTTCAGGGATAACAGCGGAGTCATTGGTCTACTAGAGCCTATGAAGAAGGTTACTGTGCCTGTCAAGGTCCCCGTGAAAGGGCCTGTGATGAAAATAGCATCAGGTAATGACCACTTGGTGATGCTGACCGCAAGCGGCGACCTCTACACATCAGGCTGCGGAGAGCAGGGGCAGCTGGGAAGGGTGCCAGAGCTCTTTGCCAACCGAGGGGGCAGGAAAGGGCTGTTGCGGTTGCTGATACCTCAGATTGTGAAGGTCCAGTCTAGGGGCAAAGTTCACTTCACAGATGCCTTCTGTGGTGCTTATATGACCATTGCTGTGTCAAAAGAAGGCCACGTCTACGGATTTGGACTGTCAAACTACCATCAGCTTGGGACCAAACTCATCAGCACATGCTTCGTTCCAATAAAACTTACCACCTTCAAAAACTCCACCATTAACTGGATTGGCTTCTCAGGGGGACAGCACCACACAGTCTGCCTCGACTCTGCCGGGAAGGTGTACAGCCTGGGCCGGGCGGAGTATGGGCGTCTGGGTCTGGGCCAGGGGGCAGAGGAGAAGAGCGAGCCCACGCCTGTGGAAGGACTGGATGAAGCCCAGGTGGTGGCATGTGGGGCATCGGTCAGCTACGCTGTCACCAAACAAGGATCTGTGTATGCCTGGGGTATGGGCACTAACCTCCAGCTTGGCACGGGTGAGGAGGATGATGAATGGAGCCCTGTAGAGATGACAGGCAAGCAGCTGGAGAACCGCATAGTACTGATGGTCGCCAGCGGCGGGCAGCACACAGTCCTGCTGGTCAAAGACAAGCAGGAGAGTTGATGTATCCTCAGGCAGGGGAAGGTTGATCTTGTTGGTCTGCACCAGAGGGATCTGCGTTAAATACCTACATGTGGGTGAGGGGTTTGTGGACGAATGTGCCTTCCTGTGCTGAGCCAGGTAAGCTgtggagggagtgtggtgatgggGCAGTGGTGAGACTGACTAGTCTCTGTTAAAGAGGGCTCTGATCTCTCCCACTCAGTGCAAAAATCCCCTAATGTATTTGGATGTGATCATTAAGAAAGagaaacacttttttttaaaaatctagtTTGTTTAGTTATTTTTGTATGACAATCTTTAGGATGCCAGTGTGTGTGGGGAAAATAGTGGACGAGCCTTTTAATGAAATCCCAAGTCACAGCCTTTTAAGATTCCCATTTTTGTTCCAagcaataaccccccccccccccttcccatgGCATCAGTAAGATGAGTACTTGTATTTCATGTCAGCAAGGTCCTTTTGCTTGAACCATGTAGTTGAGACAGCTGTTCACTGTACCCCCTTGCACAATTATTTGCTGGTCCAACTTGGAAATAAAGTACAATTTTACTGTT
>XM_021596753.2
GATCAGACTGACCGCCAATGCAGCATAATCGATTCTGATTCTGTTTGTAGTTGATATGTGTGCAAGTTCAACATTTACCTTTTGCTACTATTTCTGTCAAGTCTACCTATACAATTTGATGCATACGTTAAGACTGTTTTCGTTTTTACTAAACAGTGCGTTCTAAATAGTACATACGGTGTATTGGCAAGACAGATTTCTAACATGACCACTGTCTCTTTAAAAAATTGACGGTGCGTGGTCTGTGTAGAACAGTTGCAGACTGGGATAGCTTACAGTAACACGCACACTGAACCAGTGTGGCTTCATCTCTGTCAGCTACCAAAGTGATCCACGGTACAGGCTTGTTTCCCCCTCAAATCTTCTCACACGAGTTGTGTGTTTTGTGCAGGGTCTGTTGTAGCCATGTCTGCAAAGAAGGCTCTTAAGAGACATAAGGAAAGTAAACCAGAGGAAGTAAAGGATCCTAAGAAAGTTAAAGTTTCCCACAGCAGCTATGGGCAGGAGAAGGGTCTGGTTCTAGTGCTGGGCCAAGGGGACGTAGGACAGCTGGGTCTGGGAGAGGACATCATGGAGAGGAAGAGGCCGGCCCTGGTGACCCTGCCTGAGGGTGTGGTGCAGGTGGCGGCGGGGGGCATGCACACAGTCTGTCTCAGTGACACTGGATATATCTACACGTTTGGCTGCAATGACGAGGGTGCTCTGGGTCGAGAGACTACAGAGGAGGGCTCCGAGATGGTGCCAGGAAAGGTGGCCCTGAACGAGAGGGTGGTTCAGGTGTCTGCTGGGGACAGTCACACAGCTGCACTCACAGACGACGGCGCAGTATACATCTGGGGCTCTTTCAGGGATAACAGCGGAGTCATTGGTCTACTAGAGCCTATGAAGAAGGTTACTGTGCCTGTCAAGGTCCCCGTGAAAGGGCCTGTGATGAAAATAGCATCAGGTAATGACCACTTGGTGATGCTGACCGCAAGCGGCGACCTCTACACATCAGGCTGCGGAGAGCAGGGGCAGCTGGGAAGGGTGCCAGAGCTCTTTGCCAACCGAGGGGGCAGGAAAGGGCTGTTGCGGTTGCTGATACCTCAGATTGTGAAGGTCCAGTCTAGGGGCAAAGTTCACTTCACAGATGCCTTCTGTGGTGCTTATATGACCATTGCTGTGTCAAAAGAAGGCCACGTCTACGGATTTGGACTGTCAAACTACCATCAGCTTGGGACCAAACTCATCAGCACATGCTTCGTTCCAATAAAACTTACCACCTTCAAAAACTCCACCATTAACTGGATTGGCTTCTCAGGGGGACAGCACCACACAGTCTGCCTCGACTCTGCCGGGAAGGTGTACAGCCTGGGCCGGGCGGAGTATGGGCGTCTGGGTCTGGGCCAGGGGGCAGAGGAGAAGAGCGAGCCCACGCCTGTGGAAGGACTGGATGAAGCCCAGGTGGTGGCATGTGGGGCATCGGTCAGCTACGCTGTCACCAAACAAGGATCTGTGTATGCCTGGGGTATGGGCACTAACCTCCAGCTTGGCACGGGTGAGGAGGATGATGAATGGAGCCCTGTAGAGATGACAGGCAAGCAGCTGGAGAACCGCATAGTACTGATGGTCGCCAGCGGCGGGCAGCACACAGTCCTGCTGGTCAAAGACAAGCAGGAGAGTTGATGTATCCTCAGGCAGGGGAAGGTTGATCTTGTTGGTCTGCACCAGAGGGATCTGCGTTAAATACCTACATGTGGGTGAGGGGTTTGTGGACGAATGTGCCTTCCTGTGCTGAGCCAGGTAAGCTgtggagggagtgtggtgatgggGCAGTGGTGAGACTGACTAGTCTCTGTTAAAGAGGGCTCTGATCTCTCCCACTCAGTGCAAAAATCCCCTAATGTATTTGGATGTGATCATTAAGAAAGagaaacacttttttttaaaaatctagtTTGTTTAGTTATTTTTGTATGACAATCTTTAGGATGCCAGTGTGTGTGGGGAAAATAGTGGACGAGCCTTTTAATGAAATCCCAAGTCACAGCCTTTTAAGATTCCCATTTTTGTTCCAagcaataaccccccccccccccttcccatgGCATCAGTAAGATGAGTACTTGTATTTCATGTCAGCAAGGTCCTTTTGCTTGAACCATGTAGTTGAGACAGCTGTTCACTGTACCCCCTTGCACAATTATTTGCTGGTCCAACTTGGAAATAAAGTACAATTTTACTGTT
>XM_021596757.2
GATCAGACTGACCGCCAATGCAGCATAATCGATTCTGATTCTGTTTGTAGTTGATATGTGTGCAAGTTCAACATTTACCTTTTGCTACTATTTCTGTCAAGTCTACCTATACAATTTGATGCATACGTTAAGACTGTTTTCGTTTTTACTAAACAGTGCGTTCTAAATAGTACATACGGTGTATTGGCAAGACAGATTTCTAACATGACCACTGTCTCTTTAAAAAATTGACGGTGCGTGGTCTGTGTAGAACAGTTGCAGACTGGGATAGCTTACAGTAACACGCACACTGAACCAGTGTGGCTTCATCTCTGTCAGCTACCAAAGTGATCCACGGTACAGGCAAGCTTGTTTCCCCCTCAAATCTTCTCACACGAGTTGTGTGTTTTGTGCAGGGTCTGTTGTAGCCATGTCTGCAAAGAAGGCTCTTAAGAGACATAAGGAAAGTAAACCAGAGGAAGTAAAGGATCCTAAGAAAGTTAAAGTTTCCCACAGCAGCTATGGGCAGGAGAAGGGTCTGGTTCTAGTGCTGGGCCAAGGGGACGTAGGACAGCTGGGTCTGGGAGAGGACATCATGGAGAGGAAGAGGCCGGCCCTGGTGACCCTGCCTGAGGGTGTGGTGCAGGTGGCGGCGGGGGGCATGCACACAGTCTGTCTCAGTGACACTGGATATATCTACACGTTTGGCTGCAATGACGAGGGTGCTCTGGGTCGAGAGACTACAGAGGAGGGCTCCGAGATGGTGCCAGGAAAGGTGGCCCTGAACGAGAGGGTGGTTCAGGTGTCTGCTGGGGACAGTCACACAGCTGCACTCACAGACGACGGCGCAGTATACATCTGGGGCTCTTTCAGGGATAACAGCGGAGTCATTGGTCTACTAGAGCCTATGAAGAAGGTTACTGTGCCTGTCAAGGTCCCCGTGAAAGGGCCTGTGATGAAAATAGCATCAGGTAATGACCACTTGGTGATGCTGACCGCAAGCGGCGACCTCTACACATCAGGCTGCGGAGAGCAGGGGCAGCTGGGAAGGGTGCCAGAGCTCTTTGCCAACCGAGGGGGCAGGAAAGGGCTGTTGCGGTTGCTGATACCTCAGATTGTGAAGGTCCAGTCTAGGGGCAAAGTTCACTTCACAGATGCCTTCTGTGGTGCTTATATGACCATTGCTGTGTCAAAAGAAGGCCACGTCTACGGATTTGGACTGTCAAACTACCATCAGCTTGGGACCAAACTCATCAGCACATGCTTCGTTCCAATAAAACTTACCACCTTCAAAAACTCCACCATTAACTGGATTGGCTTCTCAGGGGGACAGCACCACACAGTCTGCCTCGACTCTGCCGGGAAGGTGTACAGCCTGGGCCGGGCGGAGTATGGGCGTCTGGGTCTGGGCCAGGGGGCAGAGGAGAAGAGCGAGCCCACGCCTGTGGAAGGACTGGATGAAGCCCAGGTGGTGGCATGTGGGGCATCGGTCAGCTACGCTGTCACCAAACAAGGATCTGTGTATGCCTGGGGTATGGGCACTAACCTCCAGCTTGGCACGGGTGAGGAGGATGATGAATGGAGCCCTGTAGAGATGACAGGCAAGCAGCTGGAGAACCGCATAGTACTGATGGTCGCCAGCGGCGGGCAGCACACAGTCCTGCTGGTCAAAGACAAGCAGGAGAGTTGATGTATCCTCAGGCAGGGGAAGGTTGATCTTGTTGGTCTGCACCAGAGGGATCTGCGTTAAATACCTACATGTGGGTGAGGGGTTTGTGGACGAATGTGCCTTCCTGTGCTGAGCCAGGTAAGCTgtggagggagtgtggtgatgggGCAGTGGTGAGACTGACTAGTCTCTGTTAAAGAGGGCTCTGATCTCTCCCACTCAGTGCAAAAATCCCCTAATGTATTTGGATGTGATCATTAAGAAAGagaaacacttttttttaaaaatctagtTTGTTTAGTTATTTTTGTATGACAATCTTTAGGATGCCAGTGTGTGTGGGGAAAATAGTGGACGAGCCTTTTAATGAAATCCCAAGTCACAGCCTTTTAAGATTCCCATTTTTGTTCCAagcaataaccccccccccccccttcccatgGCATCAGTAAGATGAGTACTTGTATTTCATGTCAGCAAGGTCCTTTTGCTTGAACCATGTAGTTGAGACAGCTGTTCACTGTACCCCCTTGCACAATTATTTGCTGGTCCAACTTGGAAATAAAGTACAATTTTACTGTT

Function

symbol description
rcc1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; head; immature eye; neural tube; and pectoral fin musculature. Orthologous to human RCC1 (regulator of chromosome condensation 1).

NR:

description
regulator of chromosome condensation-like

GO: NA

KEGG:

id description
K11493 RCC1; regulator of chromosome condensation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596759.2 False 2178 mRNA 0.50 10 36381470 36387216
XM_021596753.2 False 2226 mRNA 0.50 10 36381471 36387216
XM_021596757.2 True 2230 mRNA 0.50 10 36381471 36387216

Neighbor

gene id symbol gene type direction distance location
phactr4b LOC106584362 coding upstream 13154 36317313 ~ 36368316 (+)
LOC110519762 LOC106584688 coding upstream 79901 36293824 ~ 36301569 (+)
LOC110519702 LOC106584341 coding upstream 119503 36172193 ~ 36262289 (+)
serinc2l LOC106584332 coding upstream 236883 36125327 ~ 36144587 (+)
ptprub ptpru coding upstream 770374 35258095 ~ 35611096 (+)
LOC110519932 LOC106591969 coding downstream 270251 36657467 ~ 36659553 (+)
LOC110519936 LOC106586041 coding downstream 1031890 37419106 ~ 37424336 (+)
LOC110519939 LOC106604981 coding downstream 1098367 37428004 ~ 37489579 (+)
si:ch211-184m13.4 LOC106586045 coding downstream 1301572 37688788 ~ 37691898 (+)
LOC110519942 LOC106586050 coding downstream 1361479 37748695 ~ 37756709 (+)
G251694 NA non-coding upstream 10180 36371090 ~ 36371290 (+)
G251334 NA non-coding upstream 45890 36335370 ~ 36335580 (+)
G251329 NA non-coding upstream 51431 36329721 ~ 36330039 (+)
G251325 NA non-coding upstream 55450 36325735 ~ 36326020 (+)
G251708 NA non-coding downstream 6632 36393848 ~ 36394064 (+)
G251720 NA non-coding downstream 21063 36408279 ~ 36433127 (+)
G251721 NA non-coding downstream 24737 36411953 ~ 36423468 (+)
G251722 NA non-coding downstream 31281 36418497 ~ 36425084 (+)
G251724 NA non-coding downstream 39289 36426505 ~ 36434754 (+)
LOC110519579 gmeb1 other upstream 1160098 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 1208007 35153546 ~ 35173463 (+)
G249323 NA other upstream 1960858 34419890 ~ 34420612 (+)
G249245 NA other upstream 2078563 34302572 ~ 34302907 (+)
G248795 NA other upstream 2368413 34006158 ~ 34013057 (+)
G251773 NA other downstream 124358 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 236394 36623610 ~ 36627542 (+)
G253299 NA other downstream 1339732 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 1705106 38092322 ~ 38092734 (+)
G254204 NA other downstream 2053950 38441166 ~ 38441734 (+)

Expression


Co-expression Network