LOC110519937 (zic2)


Basic Information

Item Value
gene id LOC110519937
gene name zic2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37410268 ~ 37416025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596824.2
TACTTGGAACAAATGTACGTAGGCTATTGTCTACATGAGTCTATAGCTCACTGAAGGCTGTAGGTGCAGAGGCTATGAAcatacatcattttctttatagGGGTAAATGATCAGCAACTATTTTAAGGGAGTACTCTAGAGTATGCAGTATAATCAGTTCTATTTCATGAAATGTTGTGTTCTGATATGCTACATTATATGCTTCTGTTTCTGCTGTATATTCCTACTTTTCTATAGCAGAACTTGTGATATGCATTTCCCCATAAACGTGCGTTATTTCGCACATATAAttactgtatttatttgtaaGAGAAACACGGTCAAAATATAAAATAGTGGTTTGGCTAAATTATTGACTATCGTTTCTAATTAAATCCGCCTGTCTAATGTTGAATGAAATGTGCAGACCCCACCTTCTACCCCAAAACCCCATTCGCTAGTTCACTTACAGTTATTTCTTTAACTCTATAGCTCAGGTTTTTAAACACCATTATCACACAACGTGCAATGTCGTATTGTCAATCCACCCGTTATACATCAACCTATAAAATTAAGGTTTTAAGGCTTCATATCCGATattattttctctccctctctctctctcttcccctaaaTGCCTCTCCTAAAAAGTAGGCGGCAATTATTAGTGGAAAATGGCGATCAGCTATTAGTCGCTAAAGCGGTACCTGCTATTGGAGGGGCACCTGGGATTGATGAGACGCAGTGGCCAATGAGACTGCGTGGAATGAATGGCCGGGCTTCAGTTAAAGGGGGCGTAAGAGGCGCTAGTGCCAGTCCACGGAGAAAGAGGGACCCTACGCAATAAACACAGGCAAGCGAAAGAAATAAACACACAAATCGGAACAACAATCCGAGATGCTGCCAAACCCCGCTCTCTCTTCGTGCTAGGACAGATATTAAGATAATTATTCAATTATTCGTGTGTGTTTAAAAGCAATCAACATTCACAGTTTCCAGAGGAAAAACGCAAAGGAATCTCTTTACTTcctttgatggggattttttggTTGTTGTTAAAAGTTAACTACCAGTGAATATAGACGTGTTCGGTAAGACGAGCTGTATAGGTTTTTTTTCGTCCTATGAGTGGATCATCGCTTTGAGCTTCGCCTGATATGGTGGTTCCATGCATGGAAGTTGTTATTTCGATAACTGAATAGACAATTGAATTGTATTTTTTCTACTTTTTTGTTATACACACAAGCTGATTCGAACGAAATTCGCTTTGAGAGACCATGTTACTGGACGCAGGTCACCAGTTCCCCGGACTGGGAGTTGGCACGTTTGCCAGGCATCACACAGCGAGCGAGATGCAGGAGAGAGACTTGAGTTTAGCACAAAATAGCTTCGTCGACTCGGCACACATGGGTGCATTTAAACTGAACCATGATCTTTCTCCAGGACAGAGCTCTGCCTTCACCTCCCAGGCGCCCGGCTACCCCGCAGGGGCTTTGGGGGCTCATGCAGCCCATGTCACCTCGTACGCGAGTTCCCCGTTCAACACCACCAGGGACTTTCTCTTTCGCAGCCGAGGCTTCGGAGAATCATCTCCGGCGAGCAGCCAACACGCTATTTTCGGCCCCACGGCGGGGTCTCTTCATCAtacccacacagacagccaaGGCCACATTCTGTTCCCCGGGATTCACGACCAGCATGGGCCCCACGGATCCCCGAATGTGCTCAATGGGCAAATGCGTCTTGGACTACCGGGCGAGGTTTTCGGGCGTTCCGACCAGTACCACCAGGTCTCCAGCCCAAGGACCGACCCTTACTCGGCCGCCCAGCTCCATAACCAGTACAGCAGCATGAATATGAACATGGGGATGAACATGGgagctcaccaccaccaccaccccggTGCCTTCTTTCGCTACATGCGGCAGCAGTGCATCAAGCAGGAGCTCATCTGTAAATGGATCGACCCAGAGCAGCTGAGCAACCCCAAGAAGAGTTGCAACAAAACTTTCAGCACCATGCACGAGCTGGTCACGCACGTCTCCGTGGAGCACGTCGGCGGACCGGAGCAGAGCAACCACATTTGCTTTTGGGAAGAGTGCCCCCGCGAGAGCAAACCGTTTAAAGCGAAATACAAACTGGTGAATCACATTCGGGTCCACACGGGTGAGAAACCCTTCCCCTGCCCCTTCCCTGGATGTGGCAAGGTCTTCGCAAGGTCGGAAAATTTGAAGATTCACAAGCGTACACATACAGGAGAGAAACCATTCCAGTGTGAGTTTGAAGGCTGTGACAGGCGGTTTGCCAACAGCAGTGACCGAAAGAAGCACATGCATGTCCACACGTCTGACAAACCATATCTTTGCAAAATGTGTGACAAGTCCTACACACATCCCAGCTCTCTGCGAAAACACATGAAGGTCCACGAAGCGGCCCCCCCTCCAGCGTCCGACTCCTCGCCTGCAGCCAGTTCTGGTTACGAGTCATCCACACCGCCCGGCTTAATCTCCCCCACCACCGAGACCCAAAGCAACAACAATCTTTCACCCGCGTCCGCAGTCCACAACAACAACGGTCACAGCAGCCTATCGTCTAATTTCAGTGAATGGTATGTTTAGGACTGAACCGAACAGCGAATAACAGAACCATTGCTCAGAACCAGCGCAGGAGATTCGGACACTCATGCACGGAGGAGAGCATGAATACTATGAACGCTTCAAAAGCATATGAATAGATTTAAAACCAACAGGGAAGAGAACTCACTtaccaacagaagaaaatatgtaATATGTTCAAGGAGCATTCAATATATTTGTAAATAATTATTACACTCCCTCTTTCCCATTGGTTGTGGTAGATTTTTGTCGTTCTGTGGTGTATAGATAGATGTTCCTTCAATGGTAGCTATTTCTCTAACTGGACTTTTAGTGCACATTTTACGATTCAAGTTGTATTATGATGTTAAATATTGTGATCCTAAGGCAAATTGATTGTAACTATACTAAACATCTATAAACTGGAAAGAGTGCCAAAGTTAACACTTAACTCAAACAGTCCACCATATTTTGCTTGTGAATGTTGGCTTATATTTTAGTTTGCTGGGCTTAACTTGTGATGTTCTGTGCTTTGCAAGTTTTTAATTGTGAAATGTCTGGAAGATTAGACGTTGTACCGTTGGATTTTCTGTAATTTACATCCTTCCTTTTGTAAATATCTACTGCCATATTTATCCGTTTGTAATTAAATTATGGTATTTACTACAAATTAAACAATATTTATAAAGAATGTTTCTTTACTATAAATATGTACAATTGTGAGCTAAACAGGGGCAGTTGTTTTGTTATGTGCTTTTGTTCAAAGTTAAAGAGGTGTTTTCTTCATTATTGTGATAAGAATTTTACTGCATACAAATATAATAAAAGTGTTGCAAGTGTTAAAAAAACA
>TU288446
GATTCCCAAAGTTTTCAGACGTCCTACTCCCGGTCCCATTATTGACCGCTTTTTTAGAGTATTTGGGAGCCGAGAGGGACAAGAGAAAATATGATGTGTCTTGGAGCAGGAGGACTTGTGGGACTTGAATTAAATggaagtGAGAGAAACCATTCCAGTGTGAGTTTGAAGGCTGTGACAGGCGGTTTGCCAACAGCAGTGACCGAAAGAAGCACATGCATGTCCACACGTCTGACAAACCATATCTTTGCAAAATGTGTGACAAGTCCTACACACATCCCAGCTCTCTGCGAAAACACATGAAGGTCCACGAAGCGGCCCCCCCTCCAGCGTCCGACTCCTCGCCTGCAGCCAGTTCTGGTTACGAGTCATCCACACCGCCCGGCTTAATCTCCCCCACCACCGAGACCCAAAGCAACAACAATCTTTCACCCGCGTCCGCAGTCCACAACAACAACGGTCACAGCAGCCTATCGTCTAATTTCAGTGAATGGTATGTTTAGGACTGAACCGAACAGCGAATAACAGAACCATTGCTCAGAACCAGCGCAGGAGATTCGGACACTCATGCACGGAGGAGAGCATGAATACTATGAACGCTTCAAAAGCATATGAATAGATTTAAAACCAACAGGGAAGAGAACTCACTtaccaacagaagaaaatatgtaATATGTTCAAGGAGCATTCAATATATTTGTAAATAATTATTACACTCCCTCTTTCCCATTGGTTGTGGTAGATTTTTGTCGTTCTGTGGTGTATAGATAGATGTTCCTTCAATGGTAGCTATTTCTCTAACTGGACTTTTAGTGCACATTTTACGATTCAAGTTGTATTATGATGTTAAATATTGTGATCCTAAGGCAAATTGATTGTAACTATACTAAACATCTATAAACTGGAAAGAGTGCCAAAGTTAACACTTAACTCAAACAGTCCACCATATTTTGCTTGTGAATGTTGGCTTATATTTTAGTTTGCTGGGCTTAACTTGTGATGTTCTGTGCTTTGCAAGTTTTTAATTGTGAAATGTCTGGAAGATTAGACGTTGTACCGTTGGATTTTCTGTAATTTACATCCTTCCTTTTGTAAATATCTACTGCCATATTTATCCGTTTGTAATTAAATTATGGTATTTACTACAAATTAAACAATATTTATAAAGAATGTTTCTTTACTATAAATATGTACAATTGTGAGCTAAACAGGGGCAGTTGTTTTGTTATGTGCTTTTGTTCAAAGTTAAAGAGGTGTTTTCTTCATTATTGTGATAAGAATTTTACTGCATACAAATATAATAAAAGTGTTGCAAGTGTTAAAAAAA
>TU288447
GATTCCCAAAGTTTTCAGACGTCCTACTCCCGGTCCCATTATTGACCGCTTTTTTAGAGTATTTGGGAGCCGAGAGGGACAAGAGAAAATATGATGTGTCTTGGAGCAGGAGGACTTGTGGGACTTGAATTAAATggaagtGAGAGAAAACGTTCAAACATAGGCTCGTGCGGTTGATTGCAGCTAAAATAAACAAAAGTCATATTTTGCAGCTAAGGCAAGACTGACAAACTGTGCAAGATATCTAAGCAAAATGGACAAACCACCGACCCAACTCTCTATGAAAACAAGGAGAGAAACCATTCCAGTGTGAGTTTGAAGGCTGTGACAGGCGGTTTGCCAACAGCAGTGACCGAAAGAAGCACATGCATGTCCACACGTCTGACAAACCATATCTTTGCAAAATGTGTGACAAGTCCTACACACATCCCAGCTCTCTGCGAAAACACATGAAGGTCCACGAAGCGGCCCCCCCTCCAGCGTCCGACTCCTCGCCTGCAGCCAGTTCTGGTTACGAGTCATCCACACCGCCCGGCTTAATCTCCCCCACCACCGAGACCCAAAGCAACAACAATCTTTCACCCGCGTCCGCAGTCCACAACAACAACGGTCACAGCAGCCTATCGTCTAATTTCAGTGAATGGTATGTTTAGGACTGAACCGAACAGCGAATAACAGAACCATTGCTCAGAACCAGCGCAGGAGATTCGGACACTCATGCACGGAGGAGAGCATGAATACTATGAACGCTTCAAAAGCATATGAATAGATTTAAAACCAACAGGGAAGAGAACTCACTtaccaacagaagaaaatatgtaATATGTTCAAGGAGCATTCAATATATTTGTAAATAATTATTACACTCCCTCTTTCCCATTGGTTGTGGTAGATTTTTGTCGTTCTGTGGTGTATAGATAGATGTTCCTTCAATGGTAGCTATTTCTCTAACTGGACTTTTAGTGCACATTTTACGATTCAAGTTGTATTATGATGTTAAATATTGTGATCCTAAGGCAAATTGATTGTAACTATACTAAACATCTATAAACTGGAAAGAGTGCCAAAGTTAACACTTAACTCAAACAGTCCACCATATTTTGCTTGTGAATGTTGGCTTATATTTTAGTTTGCTGGGCTTAACTTGTGATGTTCTGTGCTTTGCAAGTTTTTAATTGTGAAATGTCTGGAAGATTAGACGTTGTACCGTTGGATTTTCTGTAATTTACATCCTTCCTTTTGTAAATATCTACTGCCATATTTATCCGTTTGTAATTAAATTATGGTATTTACTACAAATTAAACAATATTTATAAAGAATGTTTCTTTACTATAAATATGTACAATTGTGAGCTAAACAGGGGCAGTTGTTTTGTTATGTGCTTTTGTTCAAAGTTAAAGAGGTGTTTTCTTCATTATTGTGATAAGAATTTTACTGCATACAAATATAATAAAAGTGTTGCAAGTGTTAAAAAAA

Function

symbol description
zic2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Predicted to be involved in nervous system development; regulation of transcription, DNA-templated; and visual perception. Predicted to act upstream of or within several processes, including cilium organization; neural tube closure; and positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Located in nuclear body. Implicated in holoprosencephaly and holoprosencephaly 5.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596824.2 False 3423 mRNA 0.44 3 37410268 37415261
TU288446 False 1327 lncRNA 0.39 3 37410270 37416025
TU288447 True 1477 lncRNA 0.39 4 37410270 37416025

Neighbor

gene id symbol gene type direction distance location
LOC110504063 serpind1 coding downstream 517732 36882314 ~ 36906191 (-)
gpatch3 gpatch3 coding downstream 655936 36731832 ~ 36754332 (-)
LOC110519934 gpn2 coding downstream 699359 36695035 ~ 36710909 (-)
LOC110519933 NA coding downstream 724142 36664729 ~ 36686126 (-)
LOC110519931 pigv coding downstream 746023 36659224 ~ 36664245 (-)
clybl clybl coding upstream 28374 37443635 ~ 37641452 (-)
LOC118944514 NA coding upstream 273514 37688775 ~ 37692204 (-)
LOC110519943 LOC106586049 coding upstream 399448 37814709 ~ 38062756 (-)
LOC110519945 LOC105007140 coding upstream 848537 38263798 ~ 38401288 (-)
LOC110519947 LOC106586044 coding upstream 1361677 38776852 ~ 38778156 (-)
G253038 NA non-coding downstream 93 37409948 ~ 37410175 (-)
G253029 NA non-coding downstream 14781 37395208 ~ 37395487 (-)
G253027 NA non-coding downstream 15839 37394211 ~ 37394429 (-)
G252874 NA non-coding downstream 20754 37389225 ~ 37389514 (-)
G252856 NA non-coding downstream 42795 37367272 ~ 37367473 (-)
G253076 NA non-coding upstream 67918 37483179 ~ 37484517 (-)
G253139 NA non-coding upstream 163548 37578809 ~ 37580288 (-)
G253183 NA non-coding upstream 230698 37645959 ~ 37646248 (-)
G253298 NA non-coding upstream 311375 37726636 ~ 37726856 (-)
G251681 NA other downstream 1052297 36357325 ~ 36357971 (-)
G251462 LOC106584332 other downstream 1265696 36140112 ~ 36144572 (-)
G249990 NA other downstream 2513972 34895958 ~ 34896296 (-)
G249978 NA other downstream 2520314 34889506 ~ 34889954 (-)
LOC110519955 LOC106586057 other upstream 1984000 39399261 ~ 39508811 (-)
G255911 NA other upstream 2229310 39644571 ~ 39645743 (-)
G256016 LOC106581772 other upstream 2403387 39818648 ~ 39818980 (-)
G256616 NA other upstream 2907245 40322506 ~ 40322898 (-)
G256632 NA other upstream 2919949 40335210 ~ 40335440 (-)

Expression


Co-expression Network