LOC110519936 (LOC106586041)


Basic Information

Item Value
gene id LOC110519936
gene name LOC106586041
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37419106 ~ 37424336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596823.2
ATGTTCTGCCAATCGCTTGAGGACAGAGTGGGAAAAGGAACAAGCAGAGTTAGAGGCAGGACAAAATAAGTTGTATAGAccgcatatatacatatattttaatGTTTTAGAAAATCGCGGTGGCGGGGGGAGAAACAATAGTGGTGAGAGTGGATGGACTTGACAGTGTAGTTAGTAATGGAGTCCCCTTTGAGCAAGAGGAATCCAGCGATAAGATTAGCGGATTTGGCAGCGACTCAACCTCTTCCTCATCAGAATATGACAGGCTTCCCGGGGCTAGGGGGGCATCACCCTCACTCCCACCATGCTCACCACCACCCCGGAGAGATGGGCAACGACCCCGGAGTGGCACTCACTCCATTTGGACCCGAGCACATGGCACAGACAAATGCTCTCAAACTTAGCCCCTCTCAGCATATTCAGAGCTATCCTGAAGCCCAGACCGTCGCAGTGGCAGCAGCATCCTTCACTTCTACTCAGACCACAGTTGGTTACCCCGTGGCTCCTCACCCAGGCTACTCTAACAGCAGGGACTACATCCTCAGGAGAGAACTCTCAGCTTCGGCTATGCATGCACTTGGCGACCAGCATAGTTCAGCCTCCTCCCCTCATCACCATGGCATGTTCATCTCCCCAACAGGTGCTTATGGGCATGCCGAGACTTGTGCCCTTCCACTTTTCTCTGGACTCCATGACCAGGCAGCACCAGgtgcccaccaccaccaccatcaccatgccCTCAACGGGCAGATGCGTTTGGGTCTACCGGGGGACATCTACGGCAGGCCAGAACACTTCGTCCACAGGCCCGAGCATTATGGACCTTCTTCCCTCCACAGCTACAACTCCATGAACCTCAATGTGAACATCGCTTCTGCTCCTCACGGAGCCGCGGGGGCGTTTTTGAGATACATGAGGCAGCCCATCAAGCAAGAGTTAATCTGCAAATGGATTGATCAAGAGCAAACTTCAAAGAAGCCCTGCTCCAAAACTTACAGCACCATGCATGAGTTGGTCAACCATGTCACCGTGGAGCACGTCGGGGGACCGGAGCAGAGCAGTCACGTCTGCTTCTGGGAGGAATGTCCACGCGAGGGGAAAGCTTTTAAGGCGAAGTACAAACTGATAAACCACATCCGAGTTCACACGGGAGAGAAACCCTTCCCTTGTCCTTTCCCCGGCTGTGGAAAAGTGTTCGCTCGCTCTGAGAATCTAAAGATTCAtaaaaggacacacacaggagagaagcctttcaaGTGCGAGTTTGACGGCTGCGACAGGAAATTCGCCAACAGCAGTGACCGGAAGAAGCACTCCCACGTCCACACGAGTGACAAGCCTTACTACTGCAAAGTCCGAGGCTGTGACAAGTCCTACACGCACCCCAGCTCGCTGCGAAAGCACATGAAAGTCCATTGCAAGTCGCCCCCGCCCCCTTCCGCCAACGCTTCGTACCATTCCTCTACAAACCTTCTCAGTGCGCCCCTTTCTCCTGCCTCCGAACCGCACAGGAACCGGTCAGCAAATCTCTCGCCTCAGGTTACCAACCTTAATGAGTGGTACGTGTGCCAGGGGAGCGGGGGACCCAACCATCTCCACACCCCATCCAGCAATGTGCCAACGACGGACTCGGAAGAGGAGGACACTTTCAGAAATTCAGACCCAAGGACAATGCTCTAATGTTTACaaacagaagaagaaaaataatTGCCCAAATTGTCTCTCAAATGTGTATATGTGTAGTAGCCTAACGCTTCGAACACACCGACAGTGTTTTGCGCAAAATAAGACGCAGCATAATCTGGATATGTATGCAAcaacagttcaacattcaccttctgctaccattacTGTCAAGCTGTAAACACATACAGTTTGACCCATATGTTCGATAAATCAACGTATGCACCAAaccgaacgcactgcaactgcctctgcaacgcaatgctgcaaggcaaacgcagcgtttcattggaaatgaatgtaattcTGTTGTACCAAAATGCAACGACACTGTCAGTGTGATCGAAGCGTAAGACCTAATAAGTGCATGAGGACTGTACTGGCTGTAAGCATATCAATTGGACTTTATATGAAGCAAGAAATAGCGCCGCGGATGTCAGATGATGAATAACAACAACTGCCTTTAAAACGTGCCCTCTTTGTTTCCTTTCTAAAGAGCTGAATGTATCGACATATCAACAAGTCTCAACATAGAAAAGCTACAATCACCAGTATTATTTGAGAAAAGGAAATCATATATATTAAAAGGACCAAGAGAAGCCTAAATATAGGTTACTGGAAACATAAATACAATGTAATTCGTAAGGATAAAAGCCTTTGGAAAAATACCTACATAGCCTACATATGCGGGCTACATTTACATGCATGCATCTTTTAACATGATTAAGTCATAAGTTCTTAATTAGGCTTACATTGACATTGTCCATATGATCGCAACTCCTCGAAATGTTACTGTTGACTGATTAGTCAATGTCTAATCTCTGACAGAAGGGAGAAAACAGACGTTGTTGCTCACGCAAAGTACATGAGCCTTGAACACTAAACATCCCAAAATGGTGGAGTTGCATTTCATTTTTCTTCTGAATACCTCACAGTAGATGCGAGAACTAATGTAAACATCCAATTGAATTTCGAACAcctgcagagagcgagagacatgtCGCACACACATGACCCAATTAAGTCATAAATAGGAATCAAAATAATAATGGCTAACAGCTAAGTGTCTTAAAGGGTTCATATGTAGTTTTGATATTAATACAATGACTAAGTtaggatatatattttttgtcctaGGCTATTTAAGAAGTATTTAAGACTATATTTGATGCAAAAAAATTACACCAGTGTTTTTCACTCGTTAAAGAGTAGCCTACGAATAAGTCATTCGAGACCATAAATATGTACACTGACAGATTTTGTCCCTAACGGTCGGATTTGTATATAATTGTATTATTACTCGTGATTGTTGTTCTTAGTCTTAATTACGAAGAATGTTGTTTTGTACATTGTAATTTATTTGCTGGTATTAATGTTGTAATGGATTTACAGAGACACCAAAGAATAATAATATACATTTTGGTGAATAAGTAGTAGCTTACTGATTGATGCTTTTGATCTTGTTCTGTAAAAGAAAAAGTATTATTCTTTACTTGAATATAGGCAGTGTAAAGTATTATTCTTTACTTGAATATAGGCAGTGTAAAGTATTATTCTTTACTTGAATATAGGCAGTGTAAAGTATTATTCTTTACTTGAATATAGGCAGTGTAAAGTATTATTCTTTACTTGAATATAGGCAGTGTAATGTGAAACGTCCCTCCTCTCGCATGCCCTTTGCAGTGACTGTGTTTTTCTCTATGAGGTGCGTGGTGCCGTTGGTTATGTTGGATAAAAAGTGATGAAAAATCTATGATTGTGCAGACCCTTGATGTTCGTGATCCAATTGACAGTATAAATTCAAGCTAGAGCTGAATAAACACACAAGGCCGAG

Function

NR:

description
zinc finger protein ZIC 5

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0001841 neural tube formation biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09226 ZIC5; zinc finger protein ZIC 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596823.2 True 3517 mRNA 0.44 2 37419106 37424336

Neighbor

gene id symbol gene type direction distance location
LOC110519932 LOC106591969 coding upstream 759553 36657467 ~ 36659553 (+)
rcc1 rcc1 coding upstream 1031890 36381470 ~ 36387216 (+)
phactr4b LOC106584362 coding upstream 1050790 36317313 ~ 36368316 (+)
LOC110519762 LOC106584688 coding upstream 1117537 36293824 ~ 36301569 (+)
LOC110519702 LOC106584341 coding upstream 1157139 36172193 ~ 36262289 (+)
LOC110519939 LOC106604981 coding downstream 61247 37428004 ~ 37489579 (+)
si:ch211-184m13.4 LOC106586045 coding downstream 264452 37688788 ~ 37691898 (+)
LOC110519942 LOC106586050 coding downstream 324359 37748695 ~ 37756709 (+)
LOC110519944 LOC106586047 coding downstream 810007 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 1211610 38635946 ~ 38760490 (+)
G252894 NA non-coding upstream 20687 37398220 ~ 37398419 (+)
G252891 NA non-coding upstream 23385 37395515 ~ 37395721 (+)
G252866 NA non-coding upstream 34301 37384600 ~ 37384805 (+)
G252828 NA non-coding upstream 45367 37373322 ~ 37373739 (+)
G252825 NA non-coding upstream 51209 37367555 ~ 37367897 (+)
G253022 NA non-coding downstream 213977 37638313 ~ 37638677 (+)
G253305 NA non-coding downstream 304669 37729005 ~ 37752270 (+)
G253313 NA non-coding downstream 319629 37743965 ~ 37744432 (+)
G251845 zdhhc18 other upstream 791564 36623610 ~ 36627542 (+)
G251773 NA other upstream 893933 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2197734 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2245643 35153546 ~ 35173463 (+)
G249323 NA other upstream 2998494 34419890 ~ 34420612 (+)
G253299 NA other downstream 302612 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 667986 38092322 ~ 38092734 (+)
G254204 NA other downstream 1016830 38441166 ~ 38441734 (+)
G254445 NA other downstream 1176151 38600487 ~ 38600866 (+)
G254816 NA other downstream 1419174 38843510 ~ 38844556 (+)

Expression


Co-expression Network