si:ch211-184m13.4 (LOC106586045)


Basic Information

Item Value
gene id si:ch211-184m13.4
gene name LOC106586045
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37688788 ~ 37691898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596827.2
ATTTATTCATCAGGGTTCATCCTTTTTTTCTCAAACAGATTTTTTTCTCAACAGGAGAAATGTCTACCAACATCTCTGTGGTGGATTTAAACACCTCTGACACCAACCAGATGTGTGATGTCTTTGTCTACCAGAGAGCTGCCTTGATCATCTTCCCAATCTTCTACTCTCTGGTGTTCCTCATCAGTGTCTGTGGCAACTGCCTTGTCCTGTATGTGACCTGTCAGAAGAAGCAGAAGTTCAACTCCACGTCTCTTTACCTGGTCAACCTGGCTGTGTCTGATGCATTGTTCACATTGGCACTGCCAGGGAGAGTCACTTACTACATCAGACAGTTTGACTGGCCCTTTGGGGATTTGCTCTGCAGGCTGGCTACTATGTTGTTCTTTTCAAACACATACtcagGAATTGCCTTCATGACATGTATCAGTCTAGACCGGTACCTGGCCATGGTCCACCCCCACCGGCTACAGTACCTGCGGAGTGTCAAAGTGGTGCGAGGGGTCTGCTGCCTCGTCTGGCTACTGGTGTGTCTGGAAACTGCCCCCCTGCTCTTCCGTACCATGCTCCATGACCACAGAGGCCGACGAACCTGCATGGAGTACTTCACCTTTGAGGGTACTCGCTCCACCCCTTATCTTCTCTTCCTGGCCTGTACGGTTTCCTTCTGTCTCCCCCTACTGGTCATCATTGTGTGTTACACCCGGATCAATCTCAAACTGAGTCGCACAGCCAAACAGAACCCACTGACTGGCCGCTTGGGTCGTAGCCGCAGAGCCAACAatatcatcctcctcatcctcctcacctTCGTCCTGTGCTTCAGTCCCTACCACCTCAACATCATGCAGTTCATGCTGAGGAAGATGCTGGGCCAGCCCAAGTGTGACGAGATGCGGGCATTCAAGGCTTCCCTACAGGTGACTGTCTCCATGATGAACCTTAACTGTTGTCTGGACCCTGTCATCTACTTCTTTGCCATTAAGACGTACAAGCAGAGGGTGATGAGTCTGTTCAAGGGCTACCTTTCTACCCCTGCTCCTTTCTCCAAAACCGCCACcgacaacagcagcagcaacacctaaacatcaacaccagtagGAAGTTATAGTAGTTCTTTATTAAACCAGAAAGAAGTTGAGGAAGCTATTGAAGGGGATTGCACCTAGTTGATTTCTGCATCTAGGGTTTGATTTGAGGTGTTACATTTGTGTAACAAACTGAGAATTTTGTTTTGCGATAGTGAGCAAAGAATTATCAGGCTGTAACCATTGTTTGGGTGCTAGACCGTCTACAGctttgttcacactgcaggccttaataCTCAAATCCATTTAGTTTTTCAAATCCATTTTGGAATACTGACTGTacaaacagcaagttacaagtgaccaaatcgaatttgtgtgtgttcagactgTAGTCAATTGCTTACATTGTTACTCAAGTTGTCATTGTAATTGCGGGTGTGTGTCCAGTTGTTGTGTACTGGTATTATGTTAAGGTGACtgacaacaatgcctgccatggaagtctcccagttgctttgaatgtttaAAATCATAGCGTAAGAACACttttaaagcctcaaaggatAAGGTGATCCAACTTTCAGAACTAGTCATTTTTGGCTAGCCAAAGCAGTCAACAAGCTtgctaggtagctgtttagcttgCTAGCACAAATCACTAatgtgtttgtaaacaattaacaagctagATAGCTACTACATGTTGTTGTCAAACTGTCAACTGAGAAGCCTGCAAACCACACGATACGCCAAATAACAGTAAAAAAATACTAGAAGGCAAATAAATCAGAGTTGACTGTTCAGACACAAGTCACATCATTTACAAATATGGTCCAAATTGGGTCTTGAAATATCCAATTCGATGTGCTTTTTGTCTGTTCAGACTGCAGAAAAAAGAATATATTAAAATCAGATatgcattttttttgtcacttcaaaccagtgtgaacaaggcttaatAAGATGCAATTAATATAGAGCAGCCTGATTTTGAGCTCAGCTTGAACTATCAAAACTGCAAACTGAGCCTAAAGGCAAAGGTCACTTATCGCTTATATTTAAGGCAGGGGAGCATATTGACATGGGGTCCATATCAAATTTACCAATTAATTCATTTCAAATCACTCCATATGTGTTTCTTTATTTACGTAATGCCTATACAGTTGGTGTAAATGGTTTACACTGTACATATCCCATTCTGTGTTTTATATTGCTATGCCCTGTCTAAGCTGGGAGGGGGGCTACTTACTAAGCAATATGGAATTGCTTTAAGCAGGTCATaccatggaacattttgttactTGATTTCAAATGagatttttttaatataaaaatgATTTGATGAAGAAGAAAGCATTAGcctttactgctattagcccatacaaacacattgattcactacatggaacaacagatagtccccccacCAAAGAAAtataaaggaagtttgttcttaagtgtctgtcctataccTTTAACAAAACCTTTTAAAAACAACCCATATGtatgtgttcgtgagagtctaaCCTTTA

Function

NR:

description
G-protein coupled receptor 183-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596827.2 True 2563 mRNA 0.42 3 37688788 37691898

Neighbor

gene id symbol gene type direction distance location
LOC110519939 LOC106604981 coding upstream 199218 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 264452 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1029235 36657467 ~ 36659553 (+)
rcc1 rcc1 coding upstream 1301572 36381470 ~ 36387216 (+)
phactr4b LOC106584362 coding upstream 1320472 36317313 ~ 36368316 (+)
LOC110519942 LOC106586050 coding downstream 56797 37748695 ~ 37756709 (+)
LOC110519944 LOC106586047 coding downstream 542445 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 944048 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1479999 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1701743 39393641 ~ 39393713 (+)
G253022 NA non-coding upstream 50111 37638313 ~ 37638677 (+)
G252894 NA non-coding upstream 290369 37398220 ~ 37398419 (+)
G252891 NA non-coding upstream 293067 37395515 ~ 37395721 (+)
G252866 NA non-coding upstream 303983 37384600 ~ 37384805 (+)
G253305 NA non-coding downstream 37107 37729005 ~ 37752270 (+)
G253313 NA non-coding downstream 52067 37743965 ~ 37744432 (+)
G253316 NA non-coding downstream 68888 37760786 ~ 37761394 (+)
G253392 NA non-coding downstream 110710 37802608 ~ 37802882 (+)
G251845 zdhhc18 other upstream 1061246 36623610 ~ 36627542 (+)
G251773 NA other upstream 1163615 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2467416 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2515325 35153546 ~ 35173463 (+)
G249323 NA other upstream 3268176 34419890 ~ 34420612 (+)
G253299 NA other downstream 35050 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 400424 38092322 ~ 38092734 (+)
G254204 NA other downstream 749268 38441166 ~ 38441734 (+)
G254445 NA other downstream 908589 38600487 ~ 38600866 (+)
G254816 NA other downstream 1151612 38843510 ~ 38844556 (+)

Expression


Co-expression Network