LOC110519942 (LOC106586050)


Basic Information

Item Value
gene id LOC110519942
gene name LOC106586050
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37748695 ~ 37756709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596828.2
CAAACTCAAGAGCATAAACAGTAACACAGGATATTTTGATGTCACTATGGTTACGAAAGCCAGCCCGCCACTCAATCTTAGTTCTCTATTTGTCACTATGTGTCACTCTGCTCTAAAAGCCTGGGGCAACGTGGTCTTTGCTGAACTCTGAGAGAACAATTATAGTCTCATGCCAAGGAGGAACTATCCTGCTTAACTCTCATACTTTGGGAGAATACAGAAATACAGTTGATTTTGCTAGCTTCACAATAGCCACTAGCCCAATGATGGAGGTGATGAGGACCTCCAGCCATGCAAACCCAACCCCTACCCCCACCCTCAATGACTCAAACACCTGCACGACACTGTATGACCACCTGGAGTACGCCCGAGTCCTCATGCCCCTCTTCTACAGCATCGTCTTCTCCGTGGGGTTGCTGGGCAACGCCCTGGCGCTGCATGTCATCCGGCCCAACCTAAAGAAGATGAACTCCACCACGCTCTACTCCGCCAACCTGGTCATCTCTGACATCCTGTTCACACTGTCACTACCATTACGGATAATCTACTACGCCCTGGGCTTCCACTGGCCTCTGGGGGAGTCCCTGTGTAAGATCACAGGGCTGATCTTCTACATCAACACGTATGCCGGGGTCAACTTTATGACCTGCCTCAGTGTGGACCGATTCATTGCTGTGGTCTTGCCGCTCCGGTTCGCACGCTTCCGGAAGGTCTCCAATGTCCGGTTCATCTGCGTTGGGGTGTGGTTGCTGGTCTTAATGCAAACTTTGCCCCTCCTCTCCATGCCCATGACTAATGTGGAGTCTGATGGCTTCATCACTTGTATGGAGTATCCTAACTTTGAACAGGTGCCCAACATCGCCTACATGCTGATCGGCGCCGTGTTCCTAGGCTATGGAGTCCCCGTGGTGACTATCTTATTGTGCTACTCCATACTGTGCTGTAAACTCCGCCTCTCTGCAAAGACCAATCACTTAACAGACAAGTCGGGGCGCAGCCGCAAAGCCGTTGGGGTGATCTGCTGCGTCTCCCTGGTGTTTGTGGTGTGTTTCAGCCCCTACCACATCAACCTCCTCCAATACATGATCCGAAAGCTGATCTATGAAACAGACTGTGCTGAACTCACTGCCTTCCAGATCTCCTTACACTTCACTGTTTGTCTGATGAACCTTAACTCCTGCCTGGATCCATTTATCTACTTCTTTGCCTGTAAGGGTTACAAGAGGAAGGTGCTGAAGATCCTGAAGAGGCAGGTGAGCGTGTCCTTCTCCAGCGCAGTACGGACATCGCCCGAGGGTTCATCCAGAGATGTCGTAGATGGTAAGAAGATCCACCTCAACAGCACTAGATACGAACAGTGTGTCCAACAGAATGGCCAAAGGTGAGTGACAACCAATCAACAGACCGGTGAGTCAAAGACCAACCAACAGATCGGAGAGCCATCAACCAGAAAACAGACCAGCCAACAGACCGGTGAGCCCACGACCAGCCAACAAACCTTTGAGCCAGCGACCAGCTGACAGACTGGTTAGTCAATGACCAGGAAACAGACTGGTATGCAAACAACCAGCAAACTATTTGAATAACATACTATATGTTATTATTTTGAAAAACACATGATATGTTATGATTTCTAGCTAGGtgtctaatgttagctaggtggctaatgttagctactgtaggctaagggttaaggttaggggttaaggttagggttacatttaggagttaggttaaagggttcaggttaggggaagggttagctaccatgctaagtagttgcaaagtagctaaaaagtagtaagtagttgaaagttgctaattagctaaaatgcttatccgttgtccatgatgagatttgaactcgcaaccttttgATTGTTAGACATTTACGTCAGTAAATTGCAAGAGGATGTCTGAGGAGATAGACTGAACTATAACTGTATAACTGATTAACAGTTTAAAGAGGTATCTCACGTCCTCTGGAAATAGAGCCACTTAGGACAGCCAAGGTAACAAACTGTTTCTGCCTCTTGCCAATACAGTAGTGCTGAGTGATTCAccgtaaaaaaaaatatcccttgTTTACCAACATCctttcaattatttgaattccatataGTTCTGCTTTTTTTGTGAGCTCAACGTGctgtttctctagagagaaattCAATCATTAATGAGAGAAACGTTGTCAATGGGCGCATTTGAGCGGATCACTTTTGTCAAGTCGATGACCATTGTTGCGCCTACGTGTCGACTGCATATACTTTACAAACTACCATGACTTCAGTCTGCAGCCATCACCTGCATTGTGGGAGGATCTATTGTCATTGACTCACACAAACGTGACCAAAGACATGATTGAAATAGGAACAAATTTTGATACGATTCATGTATACAGTTGAGTAATTCAAATGAATTTGATATTTGAGGCTGTTTCTCACTGATTGCAGTTTATAATTGTTGAAATAAACATGGCTCCAATCCCcagaacacacactcacaaagaaAAACTTTTATTAACAATGGCAGcactgccatgttgatctgagccttgctgttggaaaaccacattaG
>TU288725
TAAAAGCCTGGGGCAACGTGGTCTTTGCTGAACTCTGAGAGAACAATTATAGTCTCATGCCAAGGAGGAACTATCCTGCTTAACTCTCATACTTTGGGAGAATACAGAAATACAGTTGATTTTGGGTTACAAGAGGAAGGTGCTGAAGATCCTGAAGAGGCAGGTGAGCGTGTCCTTCTCCAGCGCAGTACGGACATCGCCCGAGGGTTCATCCAGAGATGTCGTAGATGGTAAGAAGATCCACCTCAACAGCACTAGATACGAACAGTGTGTCCAACAGAATGGCCAAAGGTGAGTGACAACCAATCAACAGACCGGTGAGTCAAAGACCAACCAACAGATCGGAGAGCCATCAACCAGAAAACAGACCAGCCAACAGACCGGTGAGCCCACGACCAGCCAACAAACCTTTGAGCCAGCGACCAGCTGACAGACTGGTTAGTCAATGACCAGGAAACAGACTGGTATGCAAACAACCAGCAAACTATTTGAATAACATACTATATGTTATTATTTTGAAAAACACATGATATGTTATGATTTCTAGCTAGGtgtctaatgttagctaggtggctaatgttagctactgtaggctaagggttaaggttaggggttaaggttagggttacatttaggagttaggttaaagggttcaggttaggggaagggttagctaccatgctaagtagttgcaaagtagctaaaaagtagtaagtagttgaaagttgctaattagctaaaatgcttatccgttgtccatgatgagatttgaactcgcaaccttttgATTGTTAGACATTTACGTCAGTAAATTGCAAGAGGATGTCTGAGGAGATAGACTGAACTATAACTGTATAACTGATTAACAGTTTAAAGAGGTATCTCACGTCCTCTGGAAATAGAGCCACTTAGGACAGCCAAGGTAACAAACTGTTTCTGCCTCTTGCCAATACAGTAGTGCTGAGTGATTCAccgtaaaaaaaaatatcccttgTTTACCAACATCctttcaattatttgaattccatataGTTCTGCTTTTTTTGTGAGCTCAACGTGctgtttctctagagagaaattCAATCATTAATGAGAGAAACGTTGTCAATGGGCGCATTTGAGCGGATCACTTTTGTCAAGTCGATGACCATTGTTGCGCCTACGTGTCGACTGCATATACTTTACAAACTACCATGACTTCAGTCTGCAGCCATCACCTGCATTGTGGGAGGATCTATTGTCATTGACTCACACAAACGTGACCAAAGACATGATTGAAATAGGAACAAATTTTGATACGATTCATGTATACAGTTGAGTAATTCAAATGAATTTGATATTTGAGGCTGTTTCTCACTGATTGCAGTTTATAATTGTTGAAATAAACATGGCTCCAATCCCcagaacacacactcacaaagaaAAACTTTTATTAACAATGGCAGcactgccatgttgatctgagccttgctgttggaaaaccacattaGTGTCTGACTTTGGTTGTCACAGATGCACCTCCTCCGACCACTCCTCAACTTTCGTCAACAGTCGGTTGCTTTCGCTTTACCCCTTAAACACACCTAATAACTATGTGGGACGCCAggcaaatattcaacctagttcagcACAGAactgtggtaattaactacaattaccataatccattgcgcatgTTCTTCCCAGTCCCGGACAGAGGAGGATACACATAGACCAGAAGGATAGAGACAGTTCGTGAGGTAGCTCTACCCAATTGATAGTTGTAGTAGTTGGTAATAAGCAGTCTTGAAAGTATGTCTTATCTACTTTCAACAACTAATTCAATTATTTTGTCAGCCAGCTAGTTACTCACCTAGCTAAAAAGGATGACTTGTTCAATGGGATGCACAGAGATAACTTTAGATGGATGTCTGGCTgacaggctggctggctgctactgcctgagcagagatgagatgatgactttaaggaatgaaaaataataaagtaattaaataaaaacgaagtaatatacacaactgaaatattttattaaagtaaagttATGGTTAATAATGATGGCAGTAACGGGCTACCAAATTACCATCATGGTAGTTAACTATATTATTAACAATTttgttctgtgttgttacagcattcaacccactgTCAGTGTCAGGAAAAAAAGGCAGGCGATGGCATCAAAAATATTTTAATGTCATTATTTATAAATGCATTTAATGTTTAATAAAAGGGATTGGTTAAAAAAATTATCTCAAATAACACTTATCGCTCTGCACTACAATACAGTGACACGTTTTTTGCCTCTTGCAAATATAGTGACAACTTGATCAAAAGCAGAAACACAATGAGCATATAAGGACAAAATTAGACAGCATGGACACAGGCATGAAAATATGTCCCAAAATGGACAGCTGAATATTACTTCATAGTTTCAGAGACTCAGACTATAGAATAGAAAGCTTTGGAACATCACAATGCTGAGGAATGAAAAATAAGACAATGTTGATTATACTTTTTGTGTATACACTTCCTGCATTATTCTTCAATTTACCTTTTGATTATTGACAAATGTAAAATATGTCAACACCATGTACTAAATGTAACTATGTCCCTCAATTCATTTTATCAGAGTCAATGAcatccatattttttttaccaaGTGGATCACATTTTTTTATTCCTTTGTTCACAATAAGGGTTCCCCTCTGTTTTTGATTAATGTGATGACATGTGTTGATATCAAA

Function

NR:

description
G-protein coupled receptor 183-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002376 immune system process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596828.2 False 2580 mRNA 0.46 2 37748695 37755452
TU288725 True 2747 lncRNA 0.39 2 37748808 37756709

Neighbor

gene id symbol gene type direction distance location
si:ch211-184m13.4 LOC106586045 coding upstream 56797 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 259125 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 324359 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1089142 36657467 ~ 36659553 (+)
rcc1 rcc1 coding upstream 1361479 36381470 ~ 36387216 (+)
LOC110519944 LOC106586047 coding downstream 478891 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 880494 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1416445 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1638189 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 1852717 39608169 ~ 39621078 (+)
G253313 NA non-coding upstream 4263 37743965 ~ 37744432 (+)
G253022 NA non-coding upstream 110018 37638313 ~ 37638677 (+)
G252894 NA non-coding upstream 350276 37398220 ~ 37398419 (+)
G252891 NA non-coding upstream 352974 37395515 ~ 37395721 (+)
G253316 NA non-coding downstream 5334 37760786 ~ 37761394 (+)
G253392 NA non-coding downstream 47156 37802608 ~ 37802882 (+)
G253393 NA non-coding downstream 47482 37802934 ~ 37803493 (+)
G253412 NA non-coding downstream 59305 37814757 ~ 37816542 (+)
G253418 LOC106586049 non-coding downstream 68962 37824414 ~ 37841104 (+)
G253299 NA other upstream 21357 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 1121153 36623610 ~ 36627542 (+)
G251773 NA other upstream 1223522 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2527323 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2575232 35153546 ~ 35173463 (+)
G253834 LOC100136012 other downstream 336870 38092322 ~ 38092734 (+)
G254204 NA other downstream 685714 38441166 ~ 38441734 (+)
G254445 NA other downstream 845035 38600487 ~ 38600866 (+)
G254816 NA other downstream 1088058 38843510 ~ 38844556 (+)
LOC110519960 LOC106586058 other downstream 1903607 39658753 ~ 39668297 (+)

Expression


Co-expression Network