LOC110519944 (LOC106586047)


Basic Information

Item Value
gene id LOC110519944
gene name LOC106586047
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38234343 ~ 38250022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596833.2
CAAAACAGGAGGGAGTGGGCAGCAGACAACTGCATGGTTTCAGCTATTTGTTCAAATCAGAATTAGTCCTATGCTAAATTAcaccccccccctacacacatttTCGCGGACTACTGGACATAACATTATCAGCGTTTATGACCACTGATTTATTAACCAATGATGTTCGGGTCGCTCTGGGGCAGGACGCACCTGAACACTGAAAACCACTAGCGGACAGGCTGAGAGAAGGGCGAGGAAAATATAATGGTCATGGACAAGTCCTCAACAACATGAAGAATACAATCGGTGAAAGCGCTTAATTTCACGACTACAATCTGGGTAATTCCAAGATGGACAAATATCTGTCACCTCCTCAGAATATCCCAGACATCAGACAGCCATCTTTAACGGAGGACCTTGGTTCCCCATACAGCATCAACATGAGTCCCCTCCTACCTGACGTTACCTACCTGTGCCCCAACCTGTGTCGGCCTATGAGACCCATCAAGACAgagcctctctcccactccctcatcCATCCCAGTTGCCAGTGCAACCCTGGTCCAACAACCCTTCCAGAACACCCTGGGCTTTATGGCGCTTCAACAGACACAGGAAGTAGTCTGTTCATTAAACAGGAAATTCCCTCCCTGGACTTCCCAGACATTCCGTTGTTCCAgctgttgaactctgagctggaGCAGCTGGTGCCCGATCACCCGGTGAACACCAACCTCCATAGTAGGGTCCCTATGTCCTCCTTGTCGGTCCCTTTCGGCAACGTCCACATACCATCCCCCCAGATTGTTGTGAAATCTATGGGAAGCCCACAACATTTTGGCAATCGTCTGACAACCCAGTTTGCAAGCCATTCGCAGCAGCGACCAGACTATCTTCCTCCGTCCCCGCCTAACTCTGAGCCAGGGAGcccagacagagggaaagagctGATCCAGAATCGTTCTCTGCCTTCATCTTATGCAGCCAGTATTGCTTCGAAACTAAGACCTGTTCTTAGGCAAGTCCCAAGCTCTGGTCTAGGACCAGTTCTGAGCAAATGTCTTAGATTAGTTCAGAGTCCAGGTCTTGGACAAAGCCAAAGTTCTAGTCTTGGAACAGGCCAGAACCCTGGTGTTGGGCCAGTCTCCCCAAAGTTGGCTCAATCGGTTCCAGAGAGGTTTAACCGCAGGAATAACACtgacctggagaggaggaggatacatCACTGTGACATTCCAGGATGTAAGAAAGTCTACACCAAGTCCTCCCATTTAAAGGCCCATTTGCGGACACATACGGGAGAGAAGCCGTACCAATGCTCCTGGGAGGAATGCGAGTGGCGCTTTGCTCGTTCTGACGAGCTGACACGCCACTTTAGGAAACACACAGGGGCCAAGCCATTCCAGTGTGTTGTGTGTAACCGCTGTTTCTCCCGGTCTGACCACCTGGCTCTACACATGAAGAGGCACCGGAGCTAGAGAagcccacatacagtatatccttTTTTTTATTAGATCAAAGTCAAATGAAACTTTatgttaaatatacttaagtaaatctcaaactttcacaATACTATTGTGCAGACAATTGTTTCACAGGATTAGGCTCTCTGTCCTTACTGAGAAATAAATGTGGTGCTGAAACA
>XM_021596834.2
CAAAACAGGAGGGAGTGGGCAGCAGACAACTGCATGGTTTCAGCTATTTGTTCAAATCAGAATTAGTCCTATGCTAAATTAcaccccccccctacacacatttTCGCGGACTACTGGACATAACATTATCAGCGTTTATGACCACTGATTTATTAACCAATGATGTTCGGGTCGCTCTGGGGCAGGACGCACCTGAACACTGAAAACCACTAGCGGACAGGCTGAGAGAAGGGCGAGGAAAATATAATGGTCATGGACAAGTCCTCAACAACATGAAGAATACAATCGGTGAAAGCGCTTAATTTCACGACTACAATCTGGGTAATTCCAAGATGGACAAATATCTGTCACCTCCTCAGAATATCCCAGACATCAGACAGCCATCTTTAACGGAGGACCTTGGTTCCCCATACAGCATCAACATGAGTCCCCTCCTACCTGACGTTACCTACCTGTGCCCCAACCTGTGTCGGCCTATGAGACCCATCAAGACAgagcctctctcccactccctcatcCATCCCAGTTGCCAGTGCAACCCTGGTCCAACAACCCTTCCAGAACACCCTGGGCTTTATGGCGCTTCAACAGACACAGGAAGTAGTCTGTTCATTAAACAGGAAATTCCCTCCCTGGACTTCCCAGACATTCCGTTGTTCCAgctgttgaactctgagctggaGCAGCTGGTGCCCGATCACCCGGTGAACACCAACCTCCATAGTAGGGTCCCTATGTCCTCCTTGTCGGTCCCTTTCGGCAACGTCCACATACCATCCCCCCAGATTGTTGTGAAATCTATGGGAAGCCCACAACATTTTGGCAATCGTCTGACAACCCAGTTTGCAAGCCATTCGCAGCAGCGACCAGACTATCTTCCTCCGTCCCCGCCTAACTCTGAGCCAGGGAGcccagacagagggaaagagctGATCCAGAATCGTTCTCTGCCTTCATCTTATGCAGCCAGTATTGCTTCGAAACTAAGACCTGTTCTTAGGCAAGTCCCAAGCTCTGGTCTAGGACCAGTTCTGAGCAAATGTCTTAGATTAGTTCAGAGTCCAGGTCTTGGACAAAGCCAAAGTTCTAGTCTTGGAACAGGCCAGAACCCTGGTGTTGGGCCAGTCTCCCCAAAGTTGGCTCAATCGGTTCCAGAGAGGTTTAACCGCAGGAATAACACtgacctggagaggaggaggatacatCACTGTGACATTCCAGGAGAGAAGCCGTACCAATGCTCCTGGGAGGAATGCGAGTGGCGCTTTGCTCGTTCTGACGAGCTGACACGCCACTTTAGGAAACACACAGGGGCCAAGCCATTCCAGTGTGTTGTGTGTAACCGCTGTTTCTCCCGGTCTGACCACCTGGCTCTACACATGAAGAGGCACCGGAGCTAGAGAagcccacatacagtatatccttTTTTTTATTAGATCAAAGTCAAATGAAACTTTatgttaaatatacttaagtaaatctcaaactttcacaATACTATTGTGCAGACAATTGTTTCACAGGATTAGGCTCTCTGTCCTTACTGAGAAATAAATGTGGTGCTGAAACA
>XM_021596835.2
CAAAACAGGAGGGAGTGGGCAGCAGACAACTGCATGGTTTCAGCTATTTGTTCAAATCAGAATTAGTCCTATGCTAAATTAcaccccccccctacacacatttTCGCGGACTACTGGACATAACATTATCAGCGTTTATGACCACTGATTTATTAACCAATGATGTTCGGGTCGCTCTGGGGCAGGACGCACCTGAACACTGAAAACCACTAGCGGACAGGCTGAGAGAAGGGCGAGGAAAATATAATGGTCATGGACAAGTCCTCAACAACATGAAGAATACAATCGGTGAAAGCGCTTAATTTCACGACTACAATCTGGGTAATTCCAAGATGGACAAATATCTGTCACCTCCTCAGAATATCCCAGACATCAGACAGCCATCTTTAACGGAGGACCTTGGTTCCCCATACAGCATCAACATGAGTCCCCTCCTACCTGACGTTACCTACCTGTGCCCCAACCTGTGTCGGCCTATGAGACCCATCAAGACAgagcctctctcccactccctcatcCATCCCAGTTGCCAGTGCAACCCTGGTCCAACAACCCTTCCAGAACACCCTGGGCTTTATGGCGCTTCAACAGACACAGGAAGTAGTCTGTTCATTAAACAGGAAATTCCCTCCCTGGACTTCCCAGACATTCCGTTGTTCCAgctgttgaactctgagctggaGCAGCTGGTGCCCGATCACCCGGTGAACACCAACCTCCATAGTAGGGTCCCTATGTCCTCCTTGTCGGTCCCTTTCGGCAACGTCCACATACCATCCCCCCAGATTGTTGTGAAATCTATGGGAAGCCCACAACATTTTGGCAATCGTCTGACAACCCAGTTTGCAAGCCATTCGCAGCAGCGACCAGACTATCTTCCTCCGTCCCCGCCTAACTCTGAGCCAGGGAGcccagacagagggaaagagctGATCCAGAATCGTTCTCTGCCTTCATCTTATGCAGCCAGTATTGCTTCGAAACTAAGACCTGTTCTTAGGCAAGTCCCAAGCTCTGGTCTAGGACCAGTTCTGAGCAAATGTCTTAGATTAGTTCAGAGTCCAGGTCTTGGACAAAGCCAAAGTTCTAGTCTTGGAACAGGCCAGAACCCTGGTGTTGGGCCAGTCTCCCCAAAGTTGGCTCAATCGGTTCCAGAGAGGTTTAACCGCAGGAATAACACtgacctggagaggaggaggatacatCACTGTGACATTCCAGGATGTAAGAAAGTCTACACCAAGTCCTCCCATTTAAAGGCCCATTTGCGGACACATACGGGTAAATGGAGAGAAGCCGTACCAATGCTCCTGGGAGGAATGCGAGTGGCGCTTTGCTCGTTCTGACGAGCTGACACGCCACTTTAGGAAACACACAGGGGCCAAGCCATTCCAGTGTGTTGTGTGTAACCGCTGTTTCTCCCGGTCTGACCACCTGGCTCTACACATGAAGAGGCACCGGAGCTAGAGAagcccacatacagtatatccttTTTTTTATTAGATCAAAGTCAAATGAAACTTTatgttaaatatacttaagtaaatctcaaactttcacaATACTATTGTGCAGACAATTGTTTCACAGGATTAGGCTCTCTGTCCTTACTGAGAAATAAATGTGGTGCTGAAACA

Function

NR:

description
Krueppel-like factor 5 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596833.2 False 1630 mRNA 0.49 4 38234343 38250022
XM_021596834.2 False 1570 mRNA 0.49 3 38234343 38250022
XM_021596835.2 True 1637 mRNA 0.49 4 38234343 38250022

Neighbor

gene id symbol gene type direction distance location
LOC110519942 LOC106586050 coding upstream 478891 37748695 ~ 37756709 (+)
si:ch211-184m13.4 LOC106586045 coding upstream 542445 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 744773 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 810007 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1574790 36657467 ~ 36659553 (+)
LOC110519946 NA coding downstream 385924 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 921875 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1143619 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 1358147 39608169 ~ 39621078 (+)
LOC110519960 LOC106586058 coding downstream 1408731 39658753 ~ 39668297 (+)
G254039 NA non-coding upstream 1295 38232827 ~ 38233048 (+)
G254019 NA non-coding upstream 19754 38214305 ~ 38214589 (+)
G254011 NA non-coding upstream 26342 38207788 ~ 38208001 (+)
G254003 NA non-coding upstream 32385 38201750 ~ 38201958 (+)
G254000 NA non-coding upstream 34486 38199531 ~ 38199857 (+)
G254062 NA non-coding downstream 13796 38263818 ~ 38269789 (+)
G254124 NA non-coding downstream 88582 38338604 ~ 38338854 (+)
G254125 NA non-coding downstream 90013 38340035 ~ 38340248 (+)
G254127 NA non-coding downstream 91337 38341359 ~ 38343849 (+)
G254131 NA non-coding downstream 96147 38346169 ~ 38346397 (+)
G253834 LOC100136012 other upstream 141609 38092322 ~ 38092734 (+)
G253299 NA other upstream 507005 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 1606801 36623610 ~ 36627542 (+)
G251773 NA other upstream 1709170 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 3012971 35203647 ~ 35221874 (+)
G254204 NA other downstream 191144 38441166 ~ 38441734 (+)
G254445 NA other downstream 350465 38600487 ~ 38600866 (+)
G254816 NA other downstream 593488 38843510 ~ 38844556 (+)
LOC110519969 LOC106586020 other downstream 2190047 40440040 ~ 40452542 (+)

Expression


Co-expression Network