LOC110519947 (LOC106586044)


Basic Information

Item Value
gene id LOC110519947
gene name LOC106586044
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38776852 ~ 38778156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110519947
TCAAATCAGctgtctactctctcctcccaCAACGACAAGCACAGCACTACATAAACAAACTGCTAGACGTTCACTCtcattattacatgattccagTTGGTTAACAGAGACCCAGGGCTGCGAGTGAAAATGTCACTGGCTGACACCGACACAGAGCGTGGGTTCTTTGGCGCCGAGTCTGAGTGCCCTTTCTCGGAGGTAATTGAACTGAATGTAGGGGGACAGGTGTATGTGACACGGCACATGACTTTGGTCGCTGTCCCAGACTCGCTCCTCGTTCAGCAAGAAGACTCCAAAGGACCTGGCGCGCGACAACAAACGGCGCTACTTCTTGGACAGGGGACGGACTCTTGTTTCGTTATATTTTAGACTACCTACGGGACCTCAACCTGATACTGCACGATTATTTCCCCGAGCAAAGCCGGCTGCAGAGAGGCTGAGTTCTTCCAGTTGTGGACAGGTCCACGCGCATCAGCCCCAGGATGAGCAAGGATAACTAATAAAGTGATGATATTTGCCAGAGCGAGACCGAGGAGGGTGCGCTCCAGTGCGGCATAGGGTCCTTGCCAAAGAGGTGTTCTCGGACACTTTGAATGAGAGCAGAGACCCCGATCGGCCACCGAAGAGATACACGTCCCGCTACTACCTGAAATTCAATTTCCTTGAGCAGGCGTTTGACAAGCTGACGGCGGTTGGCTTTCACATGGTGGCTTGTAGCTCCACAAGCACGTGCGCCTACAATGATCCAAACGAGGATACAATCTGGACGATTTATATGGATTATGTGTTTTGTCGGGACTAAAATGTTGATATGATCCCACCCCAGTAGCCGCTTTGATATTGATGTTTACTGACATTTTCTTTGGTTTAGCCTACTGGTGAAAGTAggactcacgcacgcacgcactcctTCCTTCCAGTTATTTCACAGATTAGTCATTATGCCAGTTAGTGGCATTGAGCCACTACAGTATTGTTTTCTGAATCCAAGTCCTGTTAAAAAATAAATTGATAGAGATGATTGTTGTAAGAGATCATTCTGAATGTCCAAGAATAATAGACATAAATGTAGTTGTACTTTATTTTGTATACTAGACCGTGTGGAGACCTGTCATTttagggcaggtggggcagagcttGTTAGCATGTTaatttggcattaatacgtgtcacatatcagtttgaaaacaatgtaaaaaataataataattgagttaat
>TU290250
CAGAGACCCAGGGCTGCGAGTGAAAATGTCACTGGCTGACACCGACACAGAGCGTGGGTTCTTTGGCGCCGAGTCTGAGTGCCCTTTCTCGGAGGTAATTGAACTGAATGTAGGGGGACAGGTGTATGTGACACGGCACATGACTTTGGTCGCTGTCCCAGACTCGCTCCTCGTTCAGCAAGAAGACTCCAAAGGACCTGGCGCGCGACAACAAACGGCGCTACTTCTTGGACAGGGGACGGACTCTTGTTTCGTTATATTTTAGACTACCTACGGGACCTCAACCTGATACTGCACGATTATTTCCCCGAGCAAAGCCGGCTGCAGAGAGGCTGAGTTCTTCCAGTTGTGGACAGGTCCACGCGCATCAGCCCCAGGATGAGCAAGGATAACTAATAAAGTGATGATATTTGCCAGAGCGAGACCGAGGAGGGTGCGCTCCAGTGCGGCATAGGGTCCTTGCCAAAGAGGTGTTCTCGGACACTTTGAATGAGAGCAGAGACCCCGATCGGCCACCGAAGAGATACACGTCCCGCTACTACCTGAAATTCAATTTCCTTGAGCAGGCGTTTGACAAGCTGACGGCGGTTGGCTTTCACATGGTGGCTTGTAGCTCCACAAGCACGTGCGCCTACAATGATCCAAACGAGGATACAATCTGGACGATTTATATGGATTATGTGTTTTGTCGGGACTAAAATGTTGATATGATCCCACCCCAGTAGCCGCTTTGATATTGATGTTTACTGACATTTTCTTTGGTTTAGCCTACTGGTGAAAGTAggactcacgcacgcacgcactcctTCCTTCCAGTTATTTCACAGATTAGTCATTATGCCAGTTAGTGGCATTGAGCCACTACAGTATTGTTTTCTGAATCCAAGTCCTGTTAAAAAATAAATTGATAGAGATGATTGTTGTAAGAGATCATTCTGAATGTCCAAGAATAATAGACATAAATGTAGTTGTACTTTATTTTGTATACTAGACCGTGTGGAGACCTGTCATTttagggcaggtggggcagagcttGTTAGCATGTTaatttggcattaatacgtgtcacatatcagtttgaaaacaatgtaaaaaataataataattgagttaataaagccacatacaaacatggtctcttctttgctttcttgagtaagggcagctccaaaatgcaggtgtttcagcctagctcagcgca
>TU290246
CAGAGACCCAGGGCTGCGAGTGAAAATGTCACTGGCTGACACCGACACAGAGCGTGGGTTCTTTGGCGCCGAGTCTGAGTGCCCTTTCTCGGAGGTAATTGAACTGAATGTAGGGGGACAGGTGTATGTGACACGGCACATGACTTTGGTCGCTGTCCCAGACTCGCTCCTCGTTCAGCAAGAAGACTCCAAAGGACCTGGCGCGCGACAACAAACGGCGCTACTTCTTGGACAGGGGACGGACTCTTGTTTCGTTATATTTTAGACTACCTACGGGACCTCAACCTGATACTGCACGATTATTTCCCCGAGCAAAGCCGGCTGCAGAGAGGCTGAGTTCTTCCAGTTGTGGACAGGTCCACGCGCATCAGCCCCAGGATGAGCAAGGATAACTAATAAAGTGATGATATTTGCCAGAGCGAGACCGAGGAGGGTGCGCTCCAGTGCGGCATAGGGTCCTTGCCAAAGAGGTGTTCTCGGACACTTTGAATGAGAGCAGAGACCCCGATCGGCCACCGAAGAGATACACGTCCCGCTACTACCTGAAATTCAATTTCCTTGAGCAGGCGTTTGACAAGCTGACGGCGGTTGGCTTTCACATGGTGGCTTGTAGCTCCACAAGCACGTGCGCCTACAATGATCCAAACGAGGATACAATCTGGACGATTTATATGGATTATGTGTTTTGTCGGGACTAAAATGTTGATATGATCCCACCCCAGTAGCCGCTTTGATATTGATGTTTACTGACATTTTCTTTGGTTTAGCCTACTGGTGAAAGTAggactcacgcacgcacgcactcctTCCTTCCAGTTATTTCACAGATTAGTCATTATGCCAGTTAGTGGCATTGAGCCACTACAGTATTGTTTTCTGAATCCAAGTCCTGTTAAAAAATAAATTGATAGAGATGATTGTTGTAAGAGATCATTCTGAATGTCCAAGAATAATAGACATAAATGTAGTTGTACTTTATTTTGTATACTAGACCGTGTGGAGACCTGTCATTttagggcaggtggggcagagcttGTTAGCATGTTaatttggcattaatacgtgtcacatatcagtttgaaaacaatgtaaaaaataataataattgagttaataaag
>TU290247
CAGAGACCCAGGGCTGCGAGTGAAAATGTCACTGGCTGACACCGACACAGAGCGTGGGTTCTTTGGCGCCGAGTCTGAGTGCCCTTTCTCGGAGGTAATTGAACTGAATGTAGGGGGACAGGTGTATGTGACACGGCACATGACTTTGGTCGCTGTCCCAGACTCGCTCCTCGTTCAGCAAGAAGACTCCAAAGGACCTGGCGCGCGACAACAAACGGCGCTACTTCTTGGACAGGGGACGGACTCTTGTTTCGTTATATTTTAGACTACCTACGGGACCTCAACCTGATACTGCACGATTATTTCCCCGAGCAAAGCCGGCTGCAGAGAGGCTGAGTTCTTCCAGTTGTGGACAGGTCCACGCGCATCAGCCCCAGGATGAGCAAGGATAACTAATAAAGTGATGATATTTGCCAGAGCGAGACCGAGGAGGGTGCGCTCCAGTGCGGCATAGGGTCCTTGCCAAAGAGGTGTTCTCGGACACTTTGAATGAGAGCAGAGACCCCGATCGGCCACCGAAGAGATACACGTCCCGCTACTACCTGAAATTCAATTTCCTTGAGCAGGCGTTTGACAAGCTGACGGCGGTTGGCTTTCACATGGTGGCTTGTAGCTCCACAAGCACGTGCGCCTACAATGATCCAAACGAGGATACAATCTGGACGATTTATATGGATTATGTGTTTTGTCGGGACTAAAATGTTGATATGATCCCACCCCAGTAGCCGCTTTGATATTGATGTTTACTGACATTTTCTTTGGTTTAGCCTACTGGTGAAAGTAggactcacgcacgcacgcactcctTCCTTCCAGTTATTTCACAGATTAGTCATTATGCCAGTTAGTGGCATTGAGCCACTACAGTATTGTTTTCTGAATCCAAGTCCTGTTAAAAAATAAATTGATAGAGATGATTGTTGTAAGAGATCATTCTGAATGTCCAAGAATAATAGACATAAATGTAGTTGTACTTTATTTTGTATACTAGACCGTGTGGAGACCTGTCATTttagggcaggtggggca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110519947 False 1219 mRNA 0.48 1 38776938 38778156
TU290250 False 1201 lncRNA 0.47 1 38776852 38778052
TU290246 False 1119 lncRNA 0.46 1 38776934 38778052
TU290247 True 1029 lncRNA 0.48 1 38777024 38778052

Neighbor

gene id symbol gene type direction distance location
LOC110519945 LOC105007140 coding downstream 375650 38263798 ~ 38401288 (-)
LOC110519943 LOC106586049 coding downstream 714182 37814709 ~ 38062756 (-)
LOC118944514 NA coding downstream 1084933 37688775 ~ 37692204 (-)
clybl clybl coding downstream 1135486 37443635 ~ 37641452 (-)
LOC110519937 zic2 coding downstream 1361677 37410268 ~ 37416025 (-)
LOC110519948 mycbp2 coding upstream 17537 38795693 ~ 39140087 (-)
LOC110519952 snx25 coding upstream 453726 39231882 ~ 39252150 (-)
LOC110519953 LOC106586054 coding upstream 480635 39258791 ~ 39269466 (-)
LOC118954848 NA coding upstream 504353 39282509 ~ 39288215 (-)
LOC118944667 NA coding upstream 567609 39345765 ~ 39364915 (-)
G254756 NA non-coding downstream 1152 38775529 ~ 38775786 (-)
G254755 NA non-coding downstream 1484 38775164 ~ 38775454 (-)
G254754 NA non-coding downstream 1822 38774820 ~ 38775116 (-)
G254750 NA non-coding downstream 3460 38773242 ~ 38773478 (-)
G254749 NA non-coding downstream 3740 38772210 ~ 38773198 (-)
G255497 NA non-coding upstream 612 38778768 ~ 38779034 (-)
G255503 NA non-coding upstream 6047 38784203 ~ 38784413 (-)
G255504 NA non-coding upstream 8284 38786440 ~ 38786760 (-)
G255635 NA non-coding upstream 386303 39164459 ~ 39164883 (-)
G255642 NA non-coding upstream 393956 39172112 ~ 39172762 (-)
gpatch3 gpatch3 other downstream 2043498 36731832 ~ 36754332 (-)
G251681 NA other downstream 2418967 36357325 ~ 36357971 (-)
G251462 LOC106584332 other downstream 2632366 36140112 ~ 36144572 (-)
G249990 NA other downstream 3880642 34895958 ~ 34896296 (-)
G249978 NA other downstream 3886984 34889506 ~ 34889954 (-)
LOC110519955 LOC106586057 other upstream 621105 39399261 ~ 39508811 (-)
G255911 NA other upstream 866415 39644571 ~ 39645743 (-)
G256016 LOC106581772 other upstream 1040492 39818648 ~ 39818980 (-)
G256616 NA other upstream 1544350 40322506 ~ 40322898 (-)
G256632 NA other upstream 1557054 40335210 ~ 40335440 (-)

Expression


Co-expression Network