LOC110519950 (LOC106586053)


Basic Information

Item Value
gene id LOC110519950
gene name LOC106586053
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39171897 ~ 39214104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596859.2
GCTGTGTAGTGCCCtagcacagctgattcaaataatcaaaacttgatgatgagttggttatttgaatctgGGGGTGATGATGCCCAAGTtcggatgaccattcaaaacgatTTTTTCCAATCAGAGCTCGtgtttttcccgagttcccagttatcttgaacacactgaagtcggAGGTCAgagatttctgagttcccagtcaTCTTGAACGCGGCATAAATACACCATTGGGCTGAATCTGCACACAGCATCACTACGAAGCACGTCTCAATTGTCTACTTACAAAGAACGACCCGACCGATCATTACGGTTACCGACCGTAGTGCGTGTTGATTTTGTCTTTCTAAATGCGTGTTTTAACCAATGGAAGCGGAAGTGTTGAACCCCCAAATGATGGCGGACGTTAATGGCAACAATACATTTCAAAACGCGGAGCTCGAAGTGATAAAGCTTCAGGAGCTGGTCCGAAAATTGGAGAAACAAAACGAACAGCTCAGGACAAGAGCTAATTCAGTAAACAATTGCAATGGCCCACATATATTTCCAACCTCATCGGCCTGTCTGCACGGGAGTACAGCGTGTTCTGCTTCTAGTCTGGTTTTCTCTGCAAATGATTCAAATCCAGCACTATCGCATCCTTGTGCTCTTGGACCATACACTTCGTCCGAGGAACCATTCTCCAATTTCAAACAAAACTCGGTATTTGATACTGATGTGGAGGATGCCACTGTTCTGGACGAGGTCGATATTCTAGACCTGGATACCGTACTCCCGGTTGGAGAGTCTGATCATAGCTGGCTGTATATGTGTCCTAAGGCCAGGCTACGGGGCGAGTGTTTCCTTAGTCCCCTCCAGTGGAGCAGGCAGGTGCTGGACCAACCAGGCCCTGAAGTGGAGGTGGCCAAGAGGTCCCTGTGCCACAGACTGGAGCAAGGCAAGTGGAGGAGAAGCATCAGCAACTCGGGTCTGGTGTCCTCTGTCCGTCCTTACAGCTCCATCACAGAGTGGATCTCTCCCCGCAGCTGCCCCATCCTGCCTTACACTAAACCTGCTGTGCTAACCACAGAGTCCACAGCTCCTTTTTCTGCATCCTGCCATCCCTTGCTACAGCAGCAGACTCTCCCAGGGAGGGGCTCCTGCAGCCTTAACTCGGTTTACCACATTGCAGGTGTGAGTCGGCAGCATGCTGCGGTCAGCCCCCAGTCTTCCATGGATAGTGAGGTGGGCACTTCAGAGCTGGAGGATGACACTATATCTATGGgctataaactacaggacatgacAGACGTACAGGTCATGGCTCGACTGCAGGAGGAGAGCCTGCGTCAGGAGTACGCCACTACGTCTTCAACCACGGCCAGCCGTCGCAGCTCCAGCTTCTCACTCCGGTGCAGCGAGATGGAcctggatgaggaagaggaggatgaggagggctaCAACCAGCTCCCTCCGCCCCAGCCTCGGCTGCTCCGGACTGGGTCCATGCAGTGGGGCAGCCTGTCTCACTCACACACCTTCTCCAGTATCTCCAGTATCAGGGAGTGCAGCAGACGCAGCACCTCCACCCCTCAGTACTCCCTCAGTGGGTTGTCCCAGTACCAGCAGCAATTCTCCGGACCCTCCAGACTCATCGTGGACACATATGGATACAGGTCCAGCACAGACAAGCTGCGGAGAAGCATGCCCAACCTGATCCGAGCTCCCAGCATGCATTGCGATCCCAGTGTTGTTCCAAGCCTGGTGTCTCCTGTCAATCACTCATCTGGCCCCTCCTCCCTGCCAGTAACCATGCGGAACAGCCAAAGCTTCGACTCGTCCAATGGGCTCGCACGACTTCAGTCCTCCATTCCCTCCACCGCCCAGCTCAGCCAGCGATTCCAGAGTGTGGGAAACTTCCACACAACCCCCAGACACCCTGTCAAGGCCACAGCCTATGTCAGCCCCACAGTCCAACAGggtcccttctcctcctccaacaCCCTCTCTACCTCTGCCATTCTTCACAACATCCCCAGCAGTGCACCCAAGGCCCTCAAAGTCACCATCCCCAGTGGTGTCCCCCAGCCCTCCTCCATCCCTCGAAGTGCCTTACCACGACCCGCCTCTTTCACAGGGACTGGTGGCACCCCCCGCCCCAGCAAGATTGCCCAGCCCACACACAGTCTATTGACCCCCCCAAAGAGCCTGGCTGCGCTAAGTGCCCTGAGAGACGGCAGTTGGAAGGATGGCTGCTACTGAACCAGGGATGTTGTATAACACCTCATCATTCATTGGGTTACTGTAATATCTCTATGTTCTGAACCAAGGCCTGAGGCCATGGATCATTCATATGGGCCATATGAGTCGCAGCTTGAAGGGATACAGTGCATttacaaagtattcacaccccttgaccttctccacattttgttgtgttacagcctgaatttaaaatggattaacattttatttattttgtcactggcccataatgtcaaagtggaaatatgttttaacatttattttttacaaataaattaaaaatgaaaagctgaaatgtctgaaGCCAAttcaaccctttgttatggcaagactaAATACATTTGGAAGTAAAACATGTTTAACCTGTCacatggactccctctgtctgcaataatattgtttaacattatttttgaatgactacctcatctctctaccccacacattcaataatctgtaaggtccctcagtcaatcAATGGTGAATTTAAAAGAGTTACTgagttaaatggctgtgataggagaaaactgaggatggatagtcactccacaatactaacctaattgacagagcaaaaagaaggaagcatgtacagaattaaaacaattccaa
>TU290368
GGCATAAATACACCATTGGGCTGAATCTGCACACAGCATCACTACGAAGCACGTCTCAATTGTCTACTTACAAAGAACGACCCGACCGATCATTACGGTTACCGACCGTAGTGCGTGTTGATTTTGTCTTTCTAAATGCGTGTTTTAACCAATGGAAGCGGAAGTGTTGAACCCCCAAATGATGGCGGACGTTAATGGCAACAATACATTTCAAAACGCGGAGCTCGAAGTGATAAAGCTTCAGGAGCTGGTCCGAAAATTGGAGAAACAAAACGAACAGCTCAGGACAAGAGCTAATTCAGTAAACAATTGCAATGGCCCACATATATTTCCAA

Function

NR:

description
SLAIN motif-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596859.2 False 2853 mRNA 0.50 9 39171897 39214104
TU290368 True 335 lncRNA 0.44 1 39172109 39172443

Neighbor

gene id symbol gene type direction distance location
LOC110519946 NA coding upstream 411407 38635946 ~ 38760490 (+)
LOC110519944 LOC106586047 coding upstream 921875 38234343 ~ 38250022 (+)
LOC110519942 LOC106586050 coding upstream 1416445 37748695 ~ 37756709 (+)
si:ch211-184m13.4 LOC106586045 coding upstream 1479999 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 1682327 37428004 ~ 37489579 (+)
trnaf-gaa NA coding downstream 179537 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 394065 39608169 ~ 39621078 (+)
LOC110519960 LOC106586058 coding downstream 444649 39658753 ~ 39668297 (+)
LOC110519963 LOC106586016 coding downstream 492337 39706441 ~ 39709665 (+)
LOC110519964 LOC106586025 coding downstream 499586 39713690 ~ 39741849 (+)
G255067 NA non-coding upstream 9018 39162480 ~ 39162879 (+)
G254926 NA non-coding upstream 114456 38978976 ~ 39057441 (+)
G254848 NA non-coding upstream 267627 38903746 ~ 38904270 (+)
G254814 NA non-coding upstream 309660 38861743 ~ 38862237 (+)
G254770 NA non-coding upstream 376840 38794789 ~ 38795057 (+)
G254870 NA non-coding downstream 41548 39255652 ~ 39256757 (+)
G255115 NA non-coding downstream 55514 39269618 ~ 39269965 (+)
G255195 NA non-coding downstream 194175 39408279 ~ 39410302 (+)
G255262 NA non-coding downstream 289427 39503531 ~ 39524024 (+)
G255344 NA non-coding downstream 432587 39646691 ~ 39646895 (+)
G254816 NA other upstream 327341 38843510 ~ 38844556 (+)
G254445 NA other upstream 571031 38600487 ~ 38600866 (+)
G254204 NA other upstream 730163 38441166 ~ 38441734 (+)
G253834 LOC100136012 other upstream 1079163 38092322 ~ 38092734 (+)
G253299 NA other upstream 1444559 37726948 ~ 37727338 (+)
LOC110519969 LOC106586020 other downstream 1225965 40440040 ~ 40452542 (+)
G261749 NA other downstream 5037965 44252069 ~ 44252551 (+)
G262037 NA other downstream 5306315 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 6624817 45838921 ~ 45839480 (+)
G254874 NA non-coding downstream 3322 39175765 ~ 39176166 (+)
G255075 NA non-coding downstream 5110 39177553 ~ 39177760 (+)
G255076 NA non-coding downstream 5753 39178196 ~ 39179017 (+)
G255082 NA non-coding downstream 15881 39188324 ~ 39189618 (+)
G255083 NA non-coding downstream 18034 39190477 ~ 39190825 (+)

Expression


Co-expression Network