LOC118954848


Basic Information

Item Value
gene id LOC118954848
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39282509 ~ 39288215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005044924.1
GTAACAAAGCCCTGAGGAGGTTCAAAAGGTGGAAGGGTTTCCAAATTGGATCAAGTTTTCTACGGAGATTGGTGGTGATAGATGAATCCAAGTTCTCACACAAGAGAAAGatATTCTAAAACGGGTGGACAACAATCTTTTAGGATATCCAACATTGAGCCAACTGCTCCCGGGGATAAATGCTTTGGATCATCCAACATCAGATGTTATAACTATCCCTGATGAGATTTTGGATGAGCAACTGGAGGACACCGAATTTTACGAGATATCTATATGTcaaatgtatgtattttttaATGATAAAATGTATAACCGACACCAAAGGCCCTACACCACGAGCGGACATGGTCGAGACGGAAGGGGTACCCCGGAACGTAACGAGTAAAACAATGAATTCGGATCATTTCCCCGCTTTAAATGACTTTTCAGAGGTCGTTAATTTGCAGTTGTTTGAAATGGACAGACAACATGATGAGGACAACTCCGAGATAGAAACAATATGCAGTCAAGATATTCTAAAACTGGAGGACCACGATTTTTACGATATATCTCTATGTCAGTTGTACGTATTTTTTATGATAAAATGTTTTGTATATTTTGTATAAATATAGGTGAATATTATTGTAGAAAAGCCCAAGGACATTGGTGGAAACGTCCTTTAATTTGAGGCCTCGTACTCAGAGGTGCCAGGGGATGCCTTAATTAGGTCGGGTGGAAATGTACGACCAATCTCATCCCATAAAATTAGGAAATAGCTATAGCCTGAactcgctgctttctcttccttaactccgACTAATCCAGAAGCTCTGTGCGTCCAGGAATCCACAGAAGTCCACCGACTCGATTACCTTTCATCTGAACTTTCTGTTGCGATCGGGAGAGTGGGCCATCAGGTAATGTTTAGAGTTATTACTGCAGAGTGCGGCTTGGAGCGCACGCTTCAATTCTAACGTGATTTGGTAAATGATCAAGACCCTATGGATCATGACAGGCCAAAGTGATATGGTTAATATGTCATGAAATTACACGTACACGTGAAAACACTTGAAAGGGTGAAATATGAAGCGGCATTGTTTGCGGAACTGAATGATTCCGAAATCAAACTAATGGGTATTATAGATGGAATAACCGATCACTGTATGTATTATTCTCCTCATGATTATGATAAATAGTGACAAACATTAATTACTCAAGGATGATACCTATTGACTTCTTAATGGACCGGCATGTGGAATTCGCTAAGTATGTTAATAATGATTGTTAGGATTTGATCTTTGTGATTATGAATTTGCTTGGATACCGGTTTTGAATTTGATTGGGATACCAGTTATTCTGTTTCCTATGTTATGCAgcacagactactcagtaaatatatacagt
>TU291344
TTCCAAATTGGATCAAGTTTTCTACGGAGATTGGTGGTGATAGATGAATCCAAGTTCTCACACAAGAGAAAGatATTCTAAAACGGGTGGACAACAATCTTTTAGGATATCCAACATTGAGCCAACTGCTCCCGGGGATAAATGCTTTGGATCATCCAACATCAGATGTTATAACTATCCCTGATGAGATTTTGGATGAGCAACTGGAGGACACCGAATTTTACGAGATATCTATATGTcaaatgtatgtattttttaATGATAAAATGTATAACCGACACCAAAGGCCCTACACCACGAGCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005044924.1 False 1383 mRNA 0.39 3 39282509 39288215
TU291344 True 304 lncRNA 0.39 3 39283550 39288177

Neighbor

gene id symbol gene type direction distance location
LOC110519953 LOC106586054 coding downstream 13043 39258791 ~ 39269466 (-)
LOC110519952 snx25 coding downstream 30359 39231882 ~ 39252150 (-)
LOC110519948 mycbp2 coding downstream 142422 38795693 ~ 39140087 (-)
LOC110519947 LOC106586044 coding downstream 504353 38776852 ~ 38778156 (-)
LOC110519945 LOC105007140 coding downstream 881221 38263798 ~ 38401288 (-)
LOC118944667 NA coding upstream 57550 39345765 ~ 39364915 (-)
LOC110519954 LOC106586056 coding upstream 100560 39388775 ~ 39393540 (-)
LOC110519955 LOC106586057 coding upstream 123017 39399261 ~ 39508811 (-)
LOC110519957 LOC106586009 coding upstream 343284 39631499 ~ 39643295 (-)
LOC110519961 NA coding upstream 357840 39646055 ~ 39660579 (-)
G255686 NA non-coding downstream 6952 39275335 ~ 39275557 (-)
G255683 NA non-coding downstream 9260 39272997 ~ 39273249 (-)
G255679 NA non-coding downstream 29743 39252552 ~ 39252766 (-)
G255662 NA non-coding downstream 89237 39193052 ~ 39193272 (-)
G255751 NA non-coding upstream 119871 39408086 ~ 39410397 (-)
G255808 NA non-coding upstream 179362 39467577 ~ 39515975 (-)
G255897 NA non-coding upstream 329428 39617643 ~ 39621075 (-)
G255916 NA non-coding upstream 368812 39657027 ~ 39657546 (-)
gpatch3 gpatch3 other downstream 2549069 36731832 ~ 36754332 (-)
G251681 NA other downstream 2924538 36357325 ~ 36357971 (-)
G251462 LOC106584332 other downstream 3137937 36140112 ~ 36144572 (-)
G249990 NA other downstream 4386213 34895958 ~ 34896296 (-)
G249978 NA other downstream 4392555 34889506 ~ 34889954 (-)
G255911 NA other upstream 356356 39644571 ~ 39645743 (-)
G256016 LOC106581772 other upstream 530433 39818648 ~ 39818980 (-)
G256616 NA other upstream 1034291 40322506 ~ 40322898 (-)
G256632 NA other upstream 1046995 40335210 ~ 40335440 (-)

Expression


Co-expression Network