LOC110519956 (LOC105026395)


Basic Information

Item Value
gene id LOC110519956
gene name LOC105026395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39608169 ~ 39621078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596867.2
CTCAAACGTAACATACCCGCCCTGTTCTCCAGAACGAGGAGTTAGGGGAAATTAAGTTGTTTGACAACAACTAGCCAGTAGAAATACTTTTTAGATCACGAGAAAATATTTTTGCACGATAGTGATGAAGTTTGTTAATAGGTGTGGTGTATAGGGTTAGTATAAGTATTACACTTCCCAAAGGATATTTTGTAAACATTTCGAAGTTACCTTCTGAGCTTGACTCAACTCATCACCTTCTCATCATGCCTTTCCCCTTCGGGAAGTCTCAGAAGAGCCCAGCAGAGATTGTGAAGAGTCTGAAGGAGAACGTGGCTTACTTGGAAAAGCTGGATGCGGCAGAAAGCAAAAAATGTGAAAAGGTTGCAGAAGAGGTGTCGAAGAACCTGTCATCTCTGAAAGAGGTGCTGTGTGGTACAGGGGACAAGGAGCCCCAAACGGAGGCAGTTGCCCAACTGGCCCAGGAGCTCTACAACACCAACCTCCTTATTGCTCTCATTGCAAACCTGCAAAGGATTGATTTTGAGGGAAAGAAGGATGTGGTCCAGCTGTTCAGCAACATTGTACGGCGTCAGATTGGCACCCGTACGCCCACGGTTGAGTATATCTCCTCACACCCACAGATCCTCTTCATGCTGCTGAAAGGGTACGAGAGTGCGGAAGTGGCTCTGAACTGTGGGATGATGCTAAGGGAGTGCCTGCGTCATGAGCCCCTGGCGCGCAGCGTTCTTTTCTCTGAAGACTTCTACTGCTTCTTCCGCTATGTAGAGCTGTCCACCTTCGACATCGCCTCAGATGCTTTTGCTTCATTCAAGGATCTTCTCACGAGACATAAGATTATGTGCGCAGATTTTCTGGAGACCAATTATGACAGGGTGTTTACAGAATATGAGAAGCTACTGCATTCCGAGAATTATGTCACCAAACGGCAGTCCCTGAAGCTCCTGGGAGAGCTTCTTCTGGACAGACATAACTTCACTGTGATGACCAAGTACATCAGTCGTGCAGAGAACTTGAAGATGATGATGAACATGCTGCGAGACAACAGCCGCAACATCCAGTTTGAGGCCTTCCATGTCTTCAAGGTGTTTGTGGCCAACCCCAACAAGACTCAGCCTGTGCTGGACATTCTGCTGAAGAACCAGGCCAAGCTGGTGGACTTCCTGAGCCACTTCCAGACAGATCGCTCTGAGGACGAACAGTTCTGTGATGAGAAGAACTACCTGATCAAGCAGATCCGTGACCTGAAGAGGCCCCCGCCACCAGAGGAGGCGTGAGGGGACAGGCAGGGGGACGCCAGTtcagaggtagagagtgagaatgatggtgagagcgagcgagggagtcATGCTTGACAAGAATCTATTACTCTTCCCTTCTCTTAACTTCAAACATAGGAAAAATATATTGTACAAACTCCCTCCTCATCCCTTTTTAAGTTTCTAATGCTCATGTGGGAACGGAGGTAATTTTTAAGGCACACACAACAAGAGTGACCCAAGAACAGTTATTTAAACCCAAGAACAGCTATTTCAACCAATTCGTATGAATCAATGCACTTTGTCAGATGATGTTATATTGGACCTTAAACACGCCATTATTCTCTTAAGCACAGTAGCACACCTGAGCAATTTCCTGGGAAATTAGGATACGTGGTCAACATAAAACGGAATAAACTCTTGACAACAGGCAGTCTCACCAAACTTTACAGGAAATGTAAAATGGATTTGCAAGCTTTTAAAAGGCGATGTCCTATATGATATTTTAGGACCTAGAATTTTTAAATCAAGATATTCTTTTGCTGGCGTTATTCTATAATAGTTAACGTTTTATTTTGTAACTAACACCACACTTAACAAATTCCATAATATCTTGGTTTATTGCTTTATTTAAGAGCTCTTTCATTGATCTGCGACTTTTAATATGTGGATGACCTTAGTGGTATTATTATTTGCTTGGGATAGACACTTGGGTTGAAGTAGGTCTTTAGTTGATAACTACGTAATTATCTTCAGTCCAGCTCCTAACAGCATACAAAGTGACAATAGAAAGCTCAAAGATGCGAGTCCTCTGCATCAGTTGTCCTAATAGAATCCATCAGAGATggcagtaaaaaaaatatgaaacatGAATCGATGACATTTGTGAGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGACTAAAATAGACTGTCAGATAACGCTGCAGGGTGACCATAGGCAGCCATCCATTCTTTACTCTGATTGATCCCAATGTTGGCACTCTCTTTTTCCCCGCCCAGATGCTCGCTAGTTTTAATATGCAGTTAGGAACTGGTGTGAGATAGGAAGATGTTTTTTCTTTCAGAAATTATCACTTAATAATATTGCTTTGCAGACAACTGATAAGATGTATCCTCCCAATAATATTACTAACACATCTTATCGGACAACAATAATGCAACACAAAAGTAACACTAATGTTGCAGTGCAACAGAATCTGCCCGAGCTCTGATACTCCTAAGATGCTAGTAAGCGTGGGCTGACATGAGCTGCAtgctgtgtttcaggcctcactctcATGCAGTTAGATGCACTGGTCAGGAAGCCATTGCAGAGGCCTGTGattggaccctttttttcaattttcacttaaaatgacatacccaaatctaaccccCTGTAGCGCATGACCTGAAGcagggatatgcatattcttgataccatttgaaaggaaacactttgaagtttgtggaaatgtgaaattaatgtatgagaataacacatttagatctggtagaagataatacaaagaaaaaaaacctgCGTTTTTGTTCCATCTtcaaaatgcaagagaaaggccataatgtactattccaggttaggcacaatttagatttggccactagatggcagcagtgtatgtgcaaagttttagactgattcaatgaaacgttgtatcaagactgcccaaatgtgcctaattggtttattaatacattttcaagttcataactgtgcattctcctcaaacaatagcatggtattaatTCAAGagtttaagctttctgcccatatccaATATGTCTACTGTATGTCCTGGGAAAtcttcttgttacttacaacctcatgctaatcacattagcctacgttagctcaaccgtcccgtggtgggggggggggcacttatCCCGTAGAAGTTAAACACATTAAATGTTCCACATAATGACCTGCATTGTCAAACTTGAAGCCAATTGGGATGATTTATGTTGAATCCAAAGCACCAAATTGGCCACATTCTCTTAATGGGTGTTCGACTCTATCAataattactttaaaaaaaaagagtATCTTGAAATGACAGCATTTTTACCTTACCTGGTGTCACTTAAATTGCATAATAACAGATTACAAAAAATATATGGTGTCTGTTTTGCACAATTCTTGTATATACCTCATGGGGTTTTGAGTTCATAAGTGCTGTGTTCTCTACTTTCCTTgacaatatatttgatttgatattttggATAAACAGCATTGGTTTGTATTATGCATGCTAAATAAATCAATGTTTTTGTTTGAACTTAAGCAGGGAGTGGGACCTGGTTTTCTCTTAGGGGAAAGACTTTAACTAAATGTATTTGTTGGGTGCCTCATGTCAATTCATAATGAATTACAGGATTGGCCCCACAAAAGTATGAATGTTGCCTTACTTTCAGAATTTTTATTTGATTGTTAAGACCATGTATGTGCTCAATTTTCTTAACCAAAGGTAATTTGAGGTGGAAAATAATGCATTTCAAGTCCCAAACATAACGCCAACTTCACAGGCCCAGATAAAATTAATTTAAATTGGTAAATAATTAACTGCAAATGTGATAAACCGTGAATGGAATACTTCTGGACTAGAGACGATATTCTAGGACTTTTGGAAAAAGTGCAGTTTAGTACTGTATGTTTAATCTGGGTCACTATAATCAGCCCACATACTATTATTTATTGGAATTTCAGATCACCTGTTTTGTGGTATACCAAGCATTAATCAAAATGTTTTATCACAACTTCAAACTGAATAATTTCTTAGAGGAAATCCAATATAAAGCTAAATGTTTCAGATCATTTTCAGACCTCTGGTTACTTGGCTAGTATAATAACTCAATGGCAATATAAAATTATCAAGGCTAAATAATTGTTGGGTGATTCAgaattttaaaatgtttatgcTTTACTTTTTTCACTCTGTTTCCAATAGGCTTTGTGTATCTGATTTATTTTTACTGTGGGAAAGATTACATGTGTACATAGCTTTATTTTAAAAGGTGAATGTGTGGAAACATTAAAAAAATTTAAGACGCCA
>XM_021596866.2
TCAAACGTAACATACCCGCCCTGTTCTCCAGAACGAGGAGTTAGGGGAAATTAAGTTGTTTGACAACAACTAGCCAGTAGAAATACTTTTTAGATCACGAGAAAATATTTTTGCACGATAGTGATGAAGTTTGTTAATAGGTGTGGTGTATAGGGTTAGTATAAGTATTACACTTCCCAAAGGATATTTTGTAAACATTTCGAAGTTACCTTCTGAGCTTGGGAAAGCGGTGCATTTTTTTCCCGTCCTACATCCAGACTCAACTCATCACCTTCTCATCATGCCTTTCCCCTTCGGGAAGTCTCAGAAGAGCCCAGCAGAGATTGTGAAGAGTCTGAAGGAGAACGTGGCTTACTTGGAAAAGCTGGATGCGGCAGAAAGCAAAAAATGTGAAAAGGTTGCAGAAGAGGTGTCGAAGAACCTGTCATCTCTGAAAGAGGTGCTGTGTGGTACAGGGGACAAGGAGCCCCAAACGGAGGCAGTTGCCCAACTGGCCCAGGAGCTCTACAACACCAACCTCCTTATTGCTCTCATTGCAAACCTGCAAAGGATTGATTTTGAGGGAAAGAAGGATGTGGTCCAGCTGTTCAGCAACATTGTACGGCGTCAGATTGGCACCCGTACGCCCACGGTTGAGTATATCTCCTCACACCCACAGATCCTCTTCATGCTGCTGAAAGGGTACGAGAGTGCGGAAGTGGCTCTGAACTGTGGGATGATGCTAAGGGAGTGCCTGCGTCATGAGCCCCTGGCGCGCAGCGTTCTTTTCTCTGAAGACTTCTACTGCTTCTTCCGCTATGTAGAGCTGTCCACCTTCGACATCGCCTCAGATGCTTTTGCTTCATTCAAGGATCTTCTCACGAGACATAAGATTATGTGCGCAGATTTTCTGGAGACCAATTATGACAGGGTGTTTACAGAATATGAGAAGCTACTGCATTCCGAGAATTATGTCACCAAACGGCAGTCCCTGAAGCTCCTGGGAGAGCTTCTTCTGGACAGACATAACTTCACTGTGATGACCAAGTACATCAGTCGTGCAGAGAACTTGAAGATGATGATGAACATGCTGCGAGACAACAGCCGCAACATCCAGTTTGAGGCCTTCCATGTCTTCAAGGTGTTTGTGGCCAACCCCAACAAGACTCAGCCTGTGCTGGACATTCTGCTGAAGAACCAGGCCAAGCTGGTGGACTTCCTGAGCCACTTCCAGACAGATCGCTCTGAGGACGAACAGTTCTGTGATGAGAAGAACTACCTGATCAAGCAGATCCGTGACCTGAAGAGGCCCCCGCCACCAGAGGAGGCGTGAGGGGACAGGCAGGGGGACGCCAGTtcagaggtagagagtgagaatgatggtgagagcgagcgagggagtcATGCTTGACAAGAATCTATTACTCTTCCCTTCTCTTAACTTCAAACATAGGAAAAATATATTGTACAAACTCCCTCCTCATCCCTTTTTAAGTTTCTAATGCTCATGTGGGAACGGAGGTAATTTTTAAGGCACACACAACAAGAGTGACCCAAGAACAGTTATTTAAACCCAAGAACAGCTATTTCAACCAATTCGTATGAATCAATGCACTTTGTCAGATGATGTTATATTGGACCTTAAACACGCCATTATTCTCTTAAGCACAGTAGCACACCTGAGCAATTTCCTGGGAAATTAGGATACGTGGTCAACATAAAACGGAATAAACTCTTGACAACAGGCAGTCTCACCAAACTTTACAGGAAATGTAAAATGGATTTGCAAGCTTTTAAAAGGCGATGTCCTATATGATATTTTAGGACCTAGAATTTTTAAATCAAGATATTCTTTTGCTGGCGTTATTCTATAATAGTTAACGTTTTATTTTGTAACTAACACCACACTTAACAAATTCCATAATATCTTGGTTTATTGCTTTATTTAAGAGCTCTTTCATTGATCTGCGACTTTTAATATGTGGATGACCTTAGTGGTATTATTATTTGCTTGGGATAGACACTTGGGTTGAAGTAGGTCTTTAGTTGATAACTACGTAATTATCTTCAGTCCAGCTCCTAACAGCATACAAAGTGACAATAGAAAGCTCAAAGATGCGAGTCCTCTGCATCAGTTGTCCTAATAGAATCCATCAGAGATggcagtaaaaaaaatatgaaacatGAATCGATGACATTTGTGAGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTGGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGGAGCCAGGCTAGTAGACTAAAATAGACTGTCAGATAACGCTGCAGGGTGACCATAGGCAGCCATCCATTCTTTACTCTGATTGATCCCAATGTTGGCACTCTCTTTTTCCCCGCCCAGATGCTCGCTAGTTTTAATATGCAGTTAGGAACTGGTGTGAGATAGGAAGATGTTTTTTCTTTCAGAAATTATCACTTAATAATATTGCTTTGCAGACAACTGATAAGATGTATCCTCCCAATAATATTACTAACACATCTTATCGGACAACAATAATGCAACACAAAAGTAACACTAATGTTGCAGTGCAACAGAATCTGCCCGAGCTCTGATACTCCTAAGATGCTAGTAAGCGTGGGCTGACATGAGCTGCAtgctgtgtttcaggcctcactctcATGCAGTTAGATGCACTGGTCAGGAAGCCATTGCAGAGGCCTGTGattggaccctttttttcaattttcacttaaaatgacatacccaaatctaaccccCTGTAGCGCATGACCTGAAGcagggatatgcatattcttgataccatttgaaaggaaacactttgaagtttgtggaaatgtgaaattaatgtatgagaataacacatttagatctggtagaagataatacaaagaaaaaaaacctgCGTTTTTGTTCCATCTtcaaaatgcaagagaaaggccataatgtactattccaggttaggcacaatttagatttggccactagatggcagcagtgtatgtgcaaagttttagactgattcaatgaaacgttgtatcaagactgcccaaatgtgcctaattggtttattaatacattttcaagttcataactgtgcattctcctcaaacaatagcatggtattaatTCAAGagtttaagctttctgcccatatccaATATGTCTACTGTATGTCCTGGGAAAtcttcttgttacttacaacctcatgctaatcacattagcctacgttagctcaaccgtcccgtggtgggggggggggcacttatCCCGTAGAAGTTAAACACATTAAATGTTCCACATAATGACCTGCATTGTCAAACTTGAAGCCAATTGGGATGATTTATGTTGAATCCAAAGCACCAAATTGGCCACATTCTCTTAATGGGTGTTCGACTCTATCAataattactttaaaaaaaaagagtATCTTGAAATGACAGCATTTTTACCTTACCTGGTGTCACTTAAATTGCATAATAACAGATTACAAAAAATATATGGTGTCTGTTTTGCACAATTCTTGTATATACCTCATGGGGTTTTGAGTTCATAAGTGCTGTGTTCTCTACTTTCCTTgacaatatatttgatttgatattttggATAAACAGCATTGGTTTGTATTATGCATGCTAAATAAATCAATGTTTTTGTTTGAACTTAAGCAGGGAGTGGGACCTGGTTTTCTCTTAGGGGAAAGACTTTAACTAAATGTATTTGTTGGGTGCCTCATGTCAATTCATAATGAATTACAGGATTGGCCCCACAAAAGTATGAATGTTGCCTTACTTTCAGAATTTTTATTTGATTGTTAAGACCATGTATGTGCTCAATTTTCTTAACCAAAGGTAATTTGAGGTGGAAAATAATGCATTTCAAGTCCCAAACATAACGCCAACTTCACAGGCCCAGATAAAATTAATTTAAATTGGTAAATAATTAACTGCAAATGTGATAAACCGTGAATGGAATACTTCTGGACTAGAGACGATATTCTAGGACTTTTGGAAAAAGTGCAGTTTAGTACTGTATGTTTAATCTGGGTCACTATAATCAGCCCACATACTATTATTTATTGGAATTTCAGATCACCTGTTTTGTGGTATACCAAGCATTAATCAAAATGTTTTATCACAACTTCAAACTGAATAATTTCTTAGAGGAAATCCAATATAAAGCTAAATGTTTCAGATCATTTTCAGACCTCTGGTTACTTGGCTAGTATAATAACTCAATGGCAATATAAAATTATCAAGGCTAAATAATTGTTGGGTGATTCAgaattttaaaatgtttatgcTTTACTTTTTTCACTCTGTTTCCAATAGGCTTTGTGTATCTGATTTATTTTTACTGTGGGAAAGATTACATGTGTACATAGCTTTATTTTAAAAGGTGAATGTGTGGAAACATTAAAAAAATTTAAGACGCCA

Function

NR:

description
calcium-binding protein 39-like

GO: NA

KEGG:

id description
K08272 CAB39, MO25; calcium binding protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596867.2 False 4535 mRNA 0.41 8 39608169 39621078
XM_021596866.2 True 4570 mRNA 0.41 8 39608170 39621078

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa NA coding upstream 214456 39393641 ~ 39393713 (+)
LOC110519950 LOC106586053 coding upstream 394065 39171897 ~ 39214104 (+)
LOC110519946 NA coding upstream 847679 38635946 ~ 38760490 (+)
LOC110519944 LOC106586047 coding upstream 1358147 38234343 ~ 38250022 (+)
LOC110519942 LOC106586050 coding upstream 1852717 37748695 ~ 37756709 (+)
LOC110519960 LOC106586058 coding downstream 37675 39658753 ~ 39668297 (+)
LOC110519963 LOC106586016 coding downstream 85363 39706441 ~ 39709665 (+)
LOC110519964 LOC106586025 coding downstream 92612 39713690 ~ 39741849 (+)
LOC110519965 LOC106586023 coding downstream 124696 39745774 ~ 39769426 (+)
asmtl asmtl coding downstream 148685 39769763 ~ 39782404 (+)
G255262 NA non-coding upstream 84145 39503531 ~ 39524024 (+)
G255195 NA non-coding upstream 197867 39408279 ~ 39410302 (+)
G255115 NA non-coding upstream 338204 39269618 ~ 39269965 (+)
G254870 NA non-coding upstream 351412 39255652 ~ 39256757 (+)
G255084 NA non-coding upstream 415139 39192802 ~ 39193030 (+)
G255344 NA non-coding downstream 25613 39646691 ~ 39646895 (+)
G255346 NA non-coding downstream 26741 39647819 ~ 39648901 (+)
G255348 NA non-coding downstream 32110 39653188 ~ 39653459 (+)
G255349 NA non-coding downstream 33178 39654256 ~ 39654503 (+)
G255355 NA non-coding downstream 49026 39670104 ~ 39670733 (+)
G254816 NA other upstream 763613 38843510 ~ 38844556 (+)
G254445 NA other upstream 1007303 38600487 ~ 38600866 (+)
G254204 NA other upstream 1166435 38441166 ~ 38441734 (+)
G253834 LOC100136012 other upstream 1515435 38092322 ~ 38092734 (+)
G253299 NA other upstream 1880831 37726948 ~ 37727338 (+)
LOC110519969 LOC106586020 other downstream 818991 40440040 ~ 40452542 (+)
G261749 NA other downstream 4630991 44252069 ~ 44252551 (+)
G262037 NA other downstream 4899341 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 6217843 45838921 ~ 45839480 (+)

Expression


Co-expression Network