LOC110519957 (LOC106586009)


Basic Information

Item Value
gene id LOC110519957
gene name LOC106586009
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39631499 ~ 39643295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596868.2
AATTTAATTGGATCCGTCTGCTGTCGGTCACCCTGCAAGCATCAAAAGGGGCGGGAAGTTTGGTATTGGAGATTTCTCGGCGGATCCAGTAGCAGATTAATAAACACAATTGATCATTGAGTTCAGCGACCTACACGAAATAATTTTACTCAAGAGTTAACGTATTGTGAAGAAGGGAAATGCTCGATATATGGCTGAGGGAAAACTGTACAAGTTATGTAGGTTGATGATCGTCTGAACATGATCCATCAATCAGCATTGgagtagctaacgttacctacGTAGAACGTTGCTTTGCATCACCATGTAGGTTCACATACTGGTGGCCTGGAACGTTGCAGGCGTTTCTGAAGACATCTCGAGCCAGCTAAACGAAAGGACACCAGGATGAGCAAACAAGAGAAGATGGAATTGGACCTCGTAATCCCATCAACACTAGTTCAGAGCGACGGACACCTGAGACGATCCAACAGCGCCCCAATGATTAATGGCCTAAGTGacaattcccaggttttccacaGAGAGATTCTACGCAGCAGgcgaaacagcaccactgttgtCAACCGCCCTAATATGgtccCTTCATCGCCCATtcgtgtccccagcacaaggcttCATCAGATCAAGCGGGAGGAAGGTGTGGATGTGATGAATAGAGAGACAGCCCATGAACGGGAGGTTCAAGCAGCCATGCAGATGAGTCAGTCCTGGGAGGAGAGTCTGAGTCTGGTGAGAATTGATGATGCTCCCATGAGTGACAATGACTTTGAGAAATCTGCTTCATCGTCCCCAAAGCGCATAGACTTTGTGCCTGTGTCCCCAGCACCATCCCCTACAAGAGGGATAGGGAAGAAGCAGTGCTTCTCCCCTTCATTGCAAATTCTGGTGAGCAGCAATGGCCTATCCCCCAGCCCTATACCTAGCCCAACGCGACGCTTCAGCCGGCGGAGCCAAAGCCCCATTAACTGCATCAGGCCCAGCATCCTGGGGCCCATCAAACGTAAAGGGGagatgatggagatggagagcCAGCCAAAGAGGCTCTTTCATGGGACCACTACCATGTTGTCCTCTGATTTGCCTACTCCCCAACAACTGACAGACTTCAACTCCTGTCTCTGTCCACCAGACGTGCTAGACGGCAGCCTCAGCAGCGTGGGTTCTTCCACTGGCTCGCCAGCCAAGATGGAGGGAGTCTCAGAGTGTCCTTCCTCCAGCAACTCTCCCTTCACCCCCCTCCATGACCACTCCCCAAAATAAACAAGGGAACATGAGTCTCTAAACAAGGGTGAAGACGAGGCATAAAAGCCACCTTGGCTGTATGAGTTTCCTTTAGACTCACCTTTTTCACTTTTCTTTAGTTAATGTGGGATTCCCTTCCCCTGCTGGTTGCTTTCGCAAGGCTGTTtgctaggggaggagaggaggtgtgtgtgtttgcattgaAAGGAAACCAAAGCCTTGGATGTGTGCTGTGTGGACGCACCATGCTGTAGTAGGCCCTAGTAAGAGTAGGGGGTGATTGTGGATGCTATGTACACCAGCTGCTAGATATAGATCCTTTACATGGTGCAGCTTAGCACCACAGTGGTCAGAACCACCATGCCGTTTACCCTGCATCACATGACCATGTCAGCCACAgtattggatggaaaattactgccTGGATATGGAGAAAGGCCCCCACTAAGTTTGTGTTTTCTAAAAAATCCCCAGGCCTTTTGGTGTATGTGCACGAAATTGTCTGCAGACATTGTATGAATGAAAGGATTAAACTTGTTTTTCCTGCTTTACATAATTTTGTAAGTATGTACATAATTgtcaatttattattattataattataggtTTGTGATTGGCCCTGTGCCCGTATTAACCGCACAGCTTCAACAGTgaacggacaattccttctaaACAGCGGATTAGAAATTCTGTTTCCTTACTCTTCCAGGGGTGCGAATATGGTCGTTCTCTACTCGTCCTTGTACTGTAAGAGAAGAAAATGGTTATCCTCTGTAGTACTTAGATGTAGGGGATCAAGGAACTGTCAAAAGGTAGAGCATCAACCAGAATGTTAGCCCTTAATCTAGTCCTGCACTGGCATGCTGCAACTATAGTTGCCAGTGAGTTGGGTAGTGTCACGTACAATCTGCAGGGATGATGGGTGGACAAGGGGAACAGCACGAGAGCAGGCTGTCAGGATTAGAACACGGGAGACTCCGATCTCTGAATCCTGTGTCTTTGCCTAGACATTGCCATAGACGTGCAGCCAAGTTAGTTTTCACTTCAGAACCTTTTTATGAAATAAATAGTTTTCTTGTTTGGAGACATTTTTTTGTAAATggatttttaaaatttttttttggCTACATAATTGCACTGGTTGATACTAAATATTAGAGTAGCGCATCCTGTTCTCCTTTTTACCCTGAAATTAAATCAATAGAATGGTGTAGGACAAACACACTGTAGTGCATGGAACAAAATCATGccattatataaaaaaaaaagggaCATGTGTTGTGTCCATATCCTGTGGTCAACATTTGGCATAGCTTTTAGTGCAAAATGTTTCACTGGATGTGTTGTTTATGAATACAATGTGCAATGAACATTCGTAAGCAATACCAAAGATTGACCAGGGGAAATGTAAAGGCAGACTTAGTTTTTCTCTGAAAATCCAGTTGTACACTGATTcacaaatgtgattttagaccatTGTAAAACATTTGGGGGCTAGTCATTTCAGTTAATCCTGTTCGAATGGTCTCTTAAATTGATTTTAGTTATTTTTCCTGTTTTATTACAAGGTGTGCCATCTTACGAAGGGAGTGTGAAACTCCACTTTGTCATAAGTAAGCAAGAGTGATTGTAAATCCTTTTTATGGAAGTAAGTCATTGATCTATTTTTTTCTGAAATTATTAAGTTTTGAATACAAAAATGGCAAGCCGGTCATTCAGGTCTGCTTGCCCTGCTGTCAATATGATTGGTGTGATTTATTTTTGTCCATGatgttttatt
>XM_021596871.2
AATTTAATTGGATCCGTCTGCTGTCGGTCACCCTGCAAGCATCAAAAGGGGCGGGAAGTTTGGTATTGGAGATTTCTCGGCGGATCCAGTAGCAGATTAATAAACACAATTGATCATTGAGTTCAGCGACCTACACGAAATAATTTTACTCAAGAGTTAACGTATTGTGAAGAAGGGAAATGCTCGATATATGGCTGAGGGAAAACTGTACAAGTTATGTAGGTTGATGATCGTCTGAACATGATCCATCAATCAGCATTGgagtagctaacgttacctacGTAGAACGTTGCTTTGCATCACCATGTAGGTTCACATACTGGTGGCCTGGAACGTTGCAGGCGTTTCTGAAGACATCTCGAGCCAGCTAAACGAAAGGACACCAGGATGAGCAAACAAGAGAAGATGGAATTGGACCTCGTAATCCCATCAACACTAGTTCAGAGCGACGGACACCTGAGACGATCCAACAGCGCCCCAATGATTAATGGCCTAAGTGacaattcccaggttttccacaGAGAGATTCTACGCAGCAGgcgaaacagcaccactgttgtCAACCGCCCTAATATGgtccCTTCATCGCCCATtcgtgtccccagcacaaggcttCATCAGATCAAGCGGGAGGAAGGTGTGGATGTGATGAATAGAGAGACAGCCCATGAACGGGAGGTTCAAGCAGCCATGCAGATGAGTCAGTCCTGGGAGGAGAGTCTGAGTCTGAGTGACAATGACTTTGAGAAATCTGCTTCATCGTCCCCAAAGCGCATAGACTTTGTGCCTGTGTCCCCAGCACCATCCCCTACAAGAGGGATAGGGAAGAAGCAGTGCTTCTCCCCTTCATTGCAAATTCTGGTGAGCAGCAATGGCCTATCCCCCAGCCCTATACCTAGCCCAACGCGACGCTTCAGCCGGCGGAGCCAAAGCCCCATTAACTGCATCAGGCCCAGCATCCTGGGGCCCATCAAACGTAAAGGGGagatgatggagatggagagcCAGCCAAAGAGGCTCTTTCATGGGACCACTACCATGTTGTCCTCTGATTTGCCTACTCCCCAACAACTGACAGACTTCAACTCCTGTCTCTGTCCACCAGACGTGCTAGACGGCAGCCTCAGCAGCGTGGGTTCTTCCACTGGCTCGCCAGCCAAGATGGAGGGAGTCTCAGAGTGTCCTTCCTCCAGCAACTCTCCCTTCACCCCCCTCCATGACCACTCCCCAAAATAAACAAGGGAACATGAGTCTCTAAACAAGGGTGAAGACGAGGCATAAAAGCCACCTTGGCTGTATGAGTTTCCTTTAGACTCACCTTTTTCACTTTTCTTTAGTTAATGTGGGATTCCCTTCCCCTGCTGGTTGCTTTCGCAAGGCTGTTtgctaggggaggagaggaggtgtgtgtgtttgcattgaAAGGAAACCAAAGCCTTGGATGTGTGCTGTGTGGACGCACCATGCTGTAGTAGGCCCTAGTAAGAGTAGGGGGTGATTGTGGATGCTATGTACACCAGCTGCTAGATATAGATCCTTTACATGGTGCAGCTTAGCACCACAGTGGTCAGAACCACCATGCCGTTTACCCTGCATCACATGACCATGTCAGCCACAgtattggatggaaaattactgccTGGATATGGAGAAAGGCCCCCACTAAGTTTGTGTTTTCTAAAAAATCCCCAGGCCTTTTGGTGTATGTGCACGAAATTGTCTGCAGACATTGTATGAATGAAAGGATTAAACTTGTTTTTCCTGCTTTACATAATTTTGTAAGTATGTACATAATTgtcaatttattattattataattataggtTTGTGATTGGCCCTGTGCCCGTATTAACCGCACAGCTTCAACAGTgaacggacaattccttctaaACAGCGGATTAGAAATTCTGTTTCCTTACTCTTCCAGGGGTGCGAATATGGTCGTTCTCTACTCGTCCTTGTACTGTAAGAGAAGAAAATGGTTATCCTCTGTAGTACTTAGATGTAGGGGATCAAGGAACTGTCAAAAGGTAGAGCATCAACCAGAATGTTAGCCCTTAATCTAGTCCTGCACTGGCATGCTGCAACTATAGTTGCCAGTGAGTTGGGTAGTGTCACGTACAATCTGCAGGGATGATGGGTGGACAAGGGGAACAGCACGAGAGCAGGCTGTCAGGATTAGAACACGGGAGACTCCGATCTCTGAATCCTGTGTCTTTGCCTAGACATTGCCATAGACGTGCAGCCAAGTTAGTTTTCACTTCAGAACCTTTTTATGAAATAAATAGTTTTCTTGTTTGGAGACATTTTTTTGTAAATggatttttaaaatttttttttggCTACATAATTGCACTGGTTGATACTAAATATTAGAGTAGCGCATCCTGTTCTCCTTTTTACCCTGAAATTAAATCAATAGAATGGTGTAGGACAAACACACTGTAGTGCATGGAACAAAATCATGccattatataaaaaaaaaagggaCATGTGTTGTGTCCATATCCTGTGGTCAACATTTGGCATAGCTTTTAGTGCAAAATGTTTCACTGGATGTGTTGTTTATGAATACAATGTGCAATGAACATTCGTAAGCAATACCAAAGATTGACCAGGGGAAATGTAAAGGCAGACTTAGTTTTTCTCTGAAAATCCAGTTGTACACTGATTcacaaatgtgattttagaccatTGTAAAACATTTGGGGGCTAGTCATTTCAGTTAATCCTGTTCGAATGGTCTCTTAAATTGATTTTAGTTATTTTTCCTGTTTTATTACAAGGTGTGCCATCTTACGAAGGGAGTGTGAAACTCCACTTTGTCATAAGTAAGCAAGAGTGATTGTAAATCCTTTTTATGGAAGTAAGTCATTGATCTATTTTTTTCTGAAATTATTAAGTTTTGAATACAAAAATGGCAAGCCGGTCATTCAGGTCTGCTTGCCCTGCTGTCAATATGATTGGTGTGATTTATTTTTGTCCATGatgttttatt

Function

NR:

description
protein FAM122A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596868.2 False 3022 mRNA 0.44 11 39631499 39643295
XM_021596871.2 True 2998 mRNA 0.44 11 39631499 39643295

Neighbor

gene id symbol gene type direction distance location
LOC110519955 LOC106586057 coding downstream 122688 39399261 ~ 39508811 (-)
LOC110519954 LOC106586056 coding downstream 237959 39388775 ~ 39393540 (-)
LOC118944667 NA coding downstream 266584 39345765 ~ 39364915 (-)
LOC118954848 NA coding downstream 343284 39282509 ~ 39288215 (-)
LOC110519953 LOC106586054 coding downstream 362033 39258791 ~ 39269466 (-)
LOC110519961 NA coding upstream 2760 39646055 ~ 39660579 (-)
LOC110519967 shox coding upstream 467911 40111206 ~ 40125263 (-)
LOC118944520 NA coding upstream 636319 40279614 ~ 40282876 (-)
LOC110519968 LOC106586018 coding upstream 753083 40396378 ~ 40405035 (-)
LOC110519979 LOC106586061 coding upstream 2600281 42243576 ~ 42291605 (-)
G255897 NA non-coding downstream 10424 39617643 ~ 39621075 (-)
G255808 NA non-coding downstream 115524 39467577 ~ 39515975 (-)
G255751 NA non-coding downstream 221102 39408086 ~ 39410397 (-)
G255686 NA non-coding downstream 355942 39275335 ~ 39275557 (-)
G255916 NA non-coding upstream 13732 39657027 ~ 39657546 (-)
G255920 NA non-coding upstream 28723 39672018 ~ 39672218 (-)
G255966 NA non-coding upstream 102549 39745844 ~ 39750074 (-)
G256018 NA non-coding upstream 176665 39819960 ~ 39820197 (-)
gpatch3 gpatch3 other downstream 2898059 36731832 ~ 36754332 (-)
G251681 NA other downstream 3273528 36357325 ~ 36357971 (-)
G251462 LOC106584332 other downstream 3486927 36140112 ~ 36144572 (-)
G249990 NA other downstream 4735203 34895958 ~ 34896296 (-)
G255911 NA other upstream 1276 39644571 ~ 39645743 (-)
G256016 LOC106581772 other upstream 175353 39818648 ~ 39818980 (-)
G256616 NA other upstream 679211 40322506 ~ 40322898 (-)
G256632 NA other upstream 691915 40335210 ~ 40335440 (-)
G259259 sdpr other upstream 2120522 41763817 ~ 41767588 (-)

Expression


Co-expression Network