LOC110519961


Basic Information

Item Value
gene id LOC110519961
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39646055 ~ 39660579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974079.1
CAATAATCTAACAGCCAAACTAGCTAAATGAAATAACTGGGCTGGCTAGTAAGATAGATAACAAGCAGCTCTTCCAAGTCAGCTAGGATTGAGATGTTTCTGCTAGCTATCTAAAGCTGAAGTCGAGTTTTATTTTCCTGACATTGTCATAGATTTTAATACAACTCCTCTTTTTTAGGTAACGTTATAGGTATTCACGTATTCAGATGTTCCTGAGTACTGGACAGACCATATTTTCCAGAATACATTGACAAGGATCACTTTCGCTACAACAGAACAGAAACATCAGGCTACGGGTCCTATTGGAGGGCCCCTGATATCCGTAAGCTAACATTGCCTTTTGGAATCCCTGCTACTGTGGCTGAGCTTGGCACAATTGTGCAAGAGACATTTCAGCttcaaaaataatttgttctacAATACATGGAGAGTGCATATGGAGATCAGTTATTTTCTTTGCTTGATACTGAAGACCTAAAGGATAAAGACACCATCAAAGTGGTTGACCTTGACGGCCCACCTCTTATTACTTTAAATGTACAAGAACTCAATAACATCTCCACAGATACATCAGATGAGAGGTGCTGCCTTGGATCACGTGATACTGTGATATTGTCCTCTCCAGAAAGTACCTCTTCCCAACGCTCCAGTCCGTGGCCATCTGAGTTTGAAGTTCCTCGCTTTGCTTATGATACAGAGCTCATTCTTGAGGCAGCTAATGAAGCACACATGAAGGATGGAACACTACTCAACAATCTGCCTGTGAAATCAGACATCCTGGAAAAACTGTCTGAAAGGATCTTCCAGTTTAGAGCCTATCCGTCAAGTCTACAAATTTGGCAGGTTGCAGAAGCTTTGGTAAAAAAAACACCCATGTCTTAAAGAGCTTGGGTCCTTCTCAGGCCTGTACGGATGGCAAACCAGCCGAAAGTACAAGATGGGCAATTACAGATCGAAACTGAGAGGAATTGGTTGCCTAGAACTGGAAGTGAACTCTGTCAAGAGAAAATCACCAGAGGACAAGCCCGTTGCCAAGAAcataaacaaaacaaagaagGCGGAGGTAAATGACCTCCCACCCCACCCTGCTGGAGAAACAGATGAGACCCTGGAGAGGGAGCGAGTGGAGCTACTGGGAGAAGTACAAATACGTGACAACCACAACATTGTGAGTGCCAAAATGGCAAGGACCTTCTCATATCGAAGACAAGATGTCATTCAGGCCCTTCCTGTGAAGGACTTCAAAGATAGCTGGCCAGCCTTGTTTGAACCCATTCAGattaAGGAAGACTTGAGAAGAATTACAACTGTTGCTCTTGAGTCCACCTTTATCCAGAAGCTGGACAAATATACACCAAAACTATTGGACTTGTTTAAGACAAAAGGAGGTGCTGTAAAGGAGGACATGCAGAAAATCCTTGAAGTTCTGTATGGGTGCAACACCAGCCAGGAAAGTGTAATCCGTGGCCTGATCATATACCTCGGTGAGAGGGTTGAAGAACTTATCACAGAATACAAGGTAaaggtttttatttttgtatcctTATTTATCTCTAAATTagatcttccctctctctcctctcaagtTGCACAGTTAATCTAGTAGCCTAGTCTGTTATTTCTTATTTTCTTTCACCCCGGATGCTGACGACACCATGATCCGAGAGAACCTTGTTCAGCATGTGATGAAGGTGTTCACTGTGAAGGATCTGTACCAGAATATAGAGCATGGGATCTGCACCAGAATACAGAGCATGGGATCTGCATcgaaggagcagaggagaggaggtccTGGCTGGCCTCATCTATGGCTTAAATCTAAAGTACCCCAAAGAACTGAAGTATACCTTTGAGGTGTTCCAAAAACTATTCTTGGAACTTGATGATCTCAGGACCTCCCCACGCGTCCAAGCTCTAAAGATGAAGTTACTTGTTTTCAGAGATATCTAAAGATACCAATGAGAACTCTCAAAGGGCCACTCAAACTGTGGTCTAAACCCTACTCAGTAAGCTGAAAAGCTAGTTGCTAGGTGGTATAAGCGCTACAGTTCCCATGATGCTCTTTGTCAGGTGAAGTCATAAAATACATTGTCAATTCCTGTTTAAAAAAACAGCTTTGTTTTAAAACTTAGTCCATATGCACTAGTGGATATCTGAGATTATTTGTCAGGTGCAAGCTATATGGATGTAACTTTACCTAAGGAGGCATGGTGGAGTTATTCCCAGAATGCTTATACCTGTCAAAAATATGTCCATATGGGCTTCACTAGTGCATATAGAGTCAGGTTTAAGGGAGAATTTGGCATATATTTTGTAACAATATGTGCAATGTATGTTTTGAAAACCCATGTTTTGATTAATATAAAACCGTTTGAATGAGGTTGTATTTGAGCTAAAGTTCATATTGTGCTTTGTGTAAAGTCTATTAAGACAAATCGTTAATTTATGTTTGTTAAAATATTTCTTTGTTGTTAAGGGGTACACAGACCACCAGAAATGTTTTGCCAAACTGTACAAGATGTGAGGTCAAAGTGCTAATCCCAAACTATCACCTAAACCTTATGCAGTTGTGAAGATTTAAAAGTATTTGTAGTCAGGTGCAAGCTATCTGGATGTAACTTTGCCTAATGAGGCAAGGTGTAGTTGTACTCAGATTGCTTACAGATGACAAAATATGATTGCCTAAAAAGTAGGGTTTAAGGGACAATTTGAGATTGAAGTTTGAAAAAATTATAAAATgataacatttattttattcaaaATAAAGGTGTGGAAGTTTGAAGTT
>XR_002472915.2
TTAGTCAATAATCTAACAGCCAAACTAGCTAAATGAAATAACTGGGCTGGCTAGTAAGATAGATAACAAGCAGCTCTTCCAAGTCAGCTAGGATTGAGATGTTTCTGCTAGCTATCTAAAGCTGAAGTCGAGTTTTATTTTCCTGACATTGTCATAGATTTTAATACAACTCCTCTTTTTTAGGTAACGTTATAGGTATTCACGTATTCAGATGTTCCTGAGTACTGGACAGACCATATTTTCCAGAATACATTGACAAGGATCACTTTCGCTACAACAGAACAGAAACATCAGGCTACGGGTCCTATTGGAGGGCCCCTGATATCCGTAAGCTAACATTGCCTTTTGGAATCCCTGCTACTGTGGCTGAGCTTGGCACAATTGTGCAAGAGACATTTCAGCttcaaaaataatttgttctacAATACATGGAGAGTGCATATGGAGATCAGTTATTTTCTTTGCTTGATACTGAAGACCTAAAGGATAAAGACACCATCAAAGTGGTTGACCTTGACGGCCCACCTCTTATTACTTTAAATGTACAAGAACTCAATAACATCTCCACAGATACATCAGATGAGAGGTGCTGCCTTGGATCACGTGATACTGTGATATTGTCCTCTCCAGAAAGTACCTCTTCCCAACGCTCCAGTCCGTGGCCATCTGAGTTTGAAGTTCCTCGCTTTGCTTATGATACAGAGCTCATTCTTGAGGCAGCTAATGAAGCACACATGAAGGATGGAACACTACTCAACAATCTGCCTGTGAAATCAGACATCCTGGAAAAACTGTCTGAAAGGATCTTCCAGTTTAGAGCCTATCCGTCAAGTCTACAAATTTGGCAGGTTGCAGAAGCTTTGGTAAAAAAAACACCCATGTCTTAAAGAGCTTGGGTCCTTCTCAGGCCTGTACGGATGGCAAACCAGCCGAAAGTACAAGATGGGCAATTACAGATCGAAACTGAGAGGAATTGGTTGCCTAGAACTGGAAGTGAACTCTGTCAAGAGAAAATCACCAGAGGACAAGCCCGTTGCCAAGAAcataaacaaaacaaagaagGCGGAGGTAAATGACCTCCCACCCCACCCTGCTGGAGAAACAGATGAGACCCTGGAGAGGGAGCGAGTGGAGCTACTGGGAGAAGTACAAATACGTGACAACCACAACATTGTGAGTGCCAAAATGGCAAGGACCTTCTCATATCGAAGACAAGATGTCATTCAGGCCCTTCCTGTGAAGGACTTCAAAGATAGCTGGCCAGCCTTGTTTGAACCCATTCAGGTACAGTCAATattaAGGAAGACTTGAGAAGAATTACAACTGTTGCTCTTGAGTCCACCTTTATCCAGAAGCTGGACAAATATACACCAAAACTATTGGACTTGTTTAAGACAAAAGGAGGTGCTGTAAAGGAGGACATGCAGAAAATCCTTGAAGTTCTGTATGGGTGCAACACCAGCCAGGAAAGTGTAATCCGTGGCCTGATCATATACCTCGGTGAGAGGGTTGAAGAACTTATCACAGAATACAAGGTAaaggtttttatttttgtatcctTATTTATCTCTAAATTagatcttccctctctctcctctcaagtTGCACAGTTAATCTAGTAGCCTAGTCTGTTATTTCTTATTTTCTTTCACCCCGGATGCTGACGACACCATGATCCGAGAGAACCTTGTTCAGCATGTGATGAAGGTGTTCACTGTGAAGGATCTGTACCAGAATATAGAGCATGGGATCTGCACCAGAATACAGAGCATGGGATCTGCATcgaaggagcagaggagaggaggtccTGGCTGGCCTCATCTATGGCTTAAATCTAAAGTACCCCAAAGAACTGAAGTATACCTTTGAGGTGTTCCAAAAACTATTCTTGGAACTTGATGATCTCAGGACCTCCCCACGCGTCCAAGCTCTAAAGATGAAGTTACTTGTTTTCAGAGATATCTAAAGATACCAATGAGAACTCTCAAAGGGCCACTCAAACTGTGGTCTAAACCCTACTCAGTAAGCTGAAAAGCTAGTTGCTAGGTGGTATAAGCGCTACAGTTCCCATGATGCTCTTTGTCAGGTGAAGTCATAAAATACATTGTCAATTCCTGTTTAAAAAAACAGCTTTGTTTTAAAACTTAGTCCATATGCACTAGTGGATATCTGAGATTATTTGTCAGGTGCAAGCTATATGGATGTAACTTTACCTAAGGAGGCATGGTGGAGTTATTCCCAGAATGCTTATACCTGTCAAAAATATGTCCATATGGGCTTCACTAGTGCATATAGAGTCAGGTTTAAGGGAGAATTTGGCATATATTTTGTAACAATATGTGCAATGTATGTTTTGAAAACCCATGTTTTGATTAATATAAAACCGTTTGAATGAGGTTGTATTTGAGCTAAAGTTCATATTGTGCTTTGTGTAAAGTCTATTAAGACAAATCGTTAATTTATGTTTGTTAAAATATTTCTTTGTTGTTAAGGGGTACACAGACCACCAGAAATGTTTTGCCAAACTGTACAAGATGTGAGGTCAAAGTGCTAATCCCAAACTATCACCTAAACCTTATGCAGTTGTGAAGATTTAAAAGTATTTGTAGTCAGGTGCAAGCTATCTGGATGTAACTTTGCCTAATGAGGCAAGGTGTAGTTGTACTCAGATTGCTTACAGATGACAAAATATGATTGCCTAAAAAGTAGGGTTTAAGGGACAATTTGAGATTGAAGTTTGAAAAAATTATAAAATgataacatttattttattcaaaATAAAGGTGTGGAAGTTTGAAGTT
>XR_002472914.2
CTCAGTTTAGGTGGTCTCGAACACAACACTACCACTAAGACCCTCACGaactctacagctgcaccattagagcattctgtcaggctgcatcaccgcctggtacggcaattgatCTGCCCTCAACCGCacagctctccagagggtggtgcaggcAGCCCAACGCATCACAATGCTGCCTGCCCTCCTGGACATCTACAGCAcatggtgtcaaaggaaggccaagaagatcattaaggacctcagccacccgactGTCCCGAGCCACTGACTGTTCACTCAGCTATCGCCCAACAGAGACAGGACAGCTGCATCTTAGCTCAGACCGAGAGGCTAAAAAACAGCTTGTATTACCAGGCCATCACTGTTGAACAGCTATCGCTAGCCGTCTACCAGGTAACGTTATAGGTATTCACGTATTCAGATGTTCCTGAGTACTGGACAGACCATATTTTCCAGAATACATTGACAAGGATCACTTTCGCTACAACAGAACAGAAACATCAGGCTACGGGTCCTATTGGAGGGCCCCTGATATCCGTAAGCTAACATTGCCTTTTGGAATCCCTGCTACTGTGGCTGAGCTTGGCACAATTGTGCAAGAGACATTTCAGCttcaaaaataatttgttctacAATACATGGAGAGTGCATATGGAGATCAGTTATTTTCTTTGCTTGATACTGAAGACCTAAAGGATAAAGACACCATCAAAGTGGTTGACCTTGACGGCCCACCTCTTATTACTTTAAATGTACAAGAACTCAATAACATCTCCACAGATACATCAGATGAGAGGTGCTGCCTTGGATCACGTGATACTGTGATATTGTCCTCTCCAGAAAGTACCTCTTCCCAACGCTCCAGTCCGTGGCCATCTGAGTTTGAAGTTCCTCGCTTTGCTTATGATACAGAGCTCATTCTTGAGGCAGCTAATGAAGCACACATGAAGGATGGAACACTACTCAACAATCTGCCTGTGAAATCAGACATCCTGGAAAAACTGTCTGAAAGGATCTTCCAGTTTAGAGCCTATCCGTCAAGTCTACAAATTTGGCAGGTTGCAGAAGCTTTGGTAAAAAAAACACCCATGTCTTAAAGAGCTTGGGTCCTTCTCAGGCCTGTACGGATGGCAAACCAGCCGAAAGTACAAGATGGGCAATTACAGATCGAAACTGAGAGGAATTGGTTGCCTAGAACTGGAAGTGAACTCTGTCAAGAGAAAATCACCAGAGGACAAGCCCGTTGCCAAGAAcataaacaaaacaaagaagGCGGAGGTAAATGACCTCCCACCCCACCCTGCTGGAGAAACAGATGAGACCCTGGAGAGGGAGCGAGTGGAGCTACTGGGAGAAGTACAAATACGTGACAACCACAACATTGTGAGTGCCAAAATGGCAAGGACCTTCTCATATCGAAGACAAGATGTCATTCAGGCCCTTCCTGTGAAGGACTTCAAAGATAGCTGGCCAGCCTTGTTTGAACCCATTCAGattaAGGAAGACTTGAGAAGAATTACAACTGTTGCTCTTGAGTCCACCTTTATCCAGAAGCTGGACAAATATACACCAAAACTATTGGACTTGTTTAAGACAAAAGGAGGTGCTGTAAAGGAGGACATGCAGAAAATCCTTGAAGTTCTGTATGGGTGCAACACCAGCCAGGAAAGTGTAATCCGTGGCCTGATCATATACCTCGGTGAGAGGGTTGAAGAACTTATCACAGAATACAAGGTAaaggtttttatttttgtatcctTATTTATCTCTAAATTagatcttccctctctctcctctcaagtTGCACAGTTAATCTAGTAGCCTAGTCTGTTATTTCTTATTTTCTTTCACCCCGGATGCTGACGACACCATGATCCGAGAGAACCTTGTTCAGCATGTGATGAAGGTGTTCACTGTGAAGGATCTGTACCAGAATATAGAGCATGGGATCTGCACCAGAATACAGAGCATGGGATCTGCATcgaaggagcagaggagaggaggtccTGGCTGGCCTCATCTATGGCTTAAATCTAAAGTACCCCAAAGAACTGAAGTATACCTTTGAGGTGTTCCAAAAACTATTCTTGGAACTTGATGATCTCAGGACCTCCCCACGCGTCCAAGCTCTAAAGATGAAGTTACTTGTTTTCAGAGATATCTAAAGATACCAATGAGAACTCTCAAAGGGCCACTCAAACTGTGGTCTAAACCCTACTCAGTAAGCTGAAAAGCTAGTTGCTAGGTGGTATAAGCGCTACAGTTCCCATGATGCTCTTTGTCAGGTGAAGTCATAAAATACATTGTCAATTCCTGTTTAAAAAAACAGCTTTGTTTTAAAACTTAGTCCATATGCACTAGTGGATATCTGAGATTATTTGTCAGGTGCAAGCTATATGGATGTAACTTTACCTAAGGAGGCATGGTGGAGTTATTCCCAGAATGCTTATACCTGTCAAAAATATGTCCATATGGGCTTCACTAGTGCATATAGAGTCAGGTTTAAGGGAGAATTTGGCATATATTTTGTAACAATATGTGCAATGTATGTTTTGAAAACCCATGTTTTGATTAATATAAAACCGTTTGAATGAGGTTGTATTTGAGCTAAAGTTCATATTGTGCTTTGTGTAAAGTCTATTAAGACAAATCGTTAATTTATGTTTGTTAAAATATTTCTTTGTTGTTAAGGGGTACACAGACCACCAGAAATGTTTTGCCAAACTGTACAAGATGTGAGGTCAAAGTGCTAATCCCAAACTATCACCTAAACCTTATGCAGTTGTGAAGATTTAAAAGTATTTGTAGTCAGGTGCAAGCTATCTGGATGTAACTTTGCCTAATGAGGCAAGGTGTAGTTGTACTCAGATTGCTTACAGATGACAAAATATGATTGCCTAAAAAGTAGGGTTTAAGGGACAATTTGAGATTGAAGTTTGAAAAAATTATAAAATgataacatttattttattcaaaATAAAGGTGTGGAAGTTTGAAGTT
>TU291596
CAAAAATATGTCCATATGGGCTTCACTAGTGCATATAGAGTCAGGTTTAAGGGAGAATTTGGCATATATTTTGTAACAATATGTGCAATGTATGTTTTGAAAACCCATGTTTTGATTAATATAAAACCGTTTGAATGAGGTTGTATTTGAGCTAAAGTTCATATTGTGCTTTGTGTAAAGTCTATTAAGACAAATCGTTAATTTATGTTTGTTAAAATATTTCTTTGTTGTTAAGGGGTACACAGACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974079.1 False 2785 mRNA 0.40 4 39646055 39652961
XR_002472915.2 False 2801 mRNA 0.40 4 39646055 39652966
XR_002472914.2 False 3000 mRNA 0.42 5 39646055 39660579
TU291596 True 249 lncRNA 0.31 1 39646350 39646598

Neighbor

gene id symbol gene type direction distance location
LOC110519957 LOC106586009 coding downstream 2760 39631499 ~ 39643295 (-)
LOC110519955 LOC106586057 coding downstream 137244 39399261 ~ 39508811 (-)
LOC110519954 LOC106586056 coding downstream 252515 39388775 ~ 39393540 (-)
LOC118944667 NA coding downstream 281140 39345765 ~ 39364915 (-)
LOC118954848 NA coding downstream 357840 39282509 ~ 39288215 (-)
LOC110519967 shox coding upstream 450627 40111206 ~ 40125263 (-)
LOC118944520 NA coding upstream 619035 40279614 ~ 40282876 (-)
LOC110519968 LOC106586018 coding upstream 735799 40396378 ~ 40405035 (-)
LOC110519979 LOC106586061 coding upstream 2582997 42243576 ~ 42291605 (-)
col6a3 LOC106598405 coding upstream 2631149 42291728 ~ 42329627 (-)
G255897 NA non-coding downstream 24980 39617643 ~ 39621075 (-)
G255808 NA non-coding downstream 130080 39467577 ~ 39515975 (-)
G255751 NA non-coding downstream 235658 39408086 ~ 39410397 (-)
G255686 NA non-coding downstream 370498 39275335 ~ 39275557 (-)
G255920 NA non-coding upstream 11439 39672018 ~ 39672218 (-)
G255966 NA non-coding upstream 85265 39745844 ~ 39750074 (-)
G256018 NA non-coding upstream 159381 39819960 ~ 39820197 (-)
G256024 NA non-coding upstream 170531 39831110 ~ 39831325 (-)
G256028 NA non-coding upstream 179860 39840439 ~ 39840918 (-)
G255911 NA other downstream 312 39644571 ~ 39645743 (-)
gpatch3 gpatch3 other downstream 2912615 36731832 ~ 36754332 (-)
G251681 NA other downstream 3288084 36357325 ~ 36357971 (-)
G251462 LOC106584332 other downstream 3501483 36140112 ~ 36144572 (-)
G256016 LOC106581772 other upstream 158069 39818648 ~ 39818980 (-)
G256616 NA other upstream 661927 40322506 ~ 40322898 (-)
G256632 NA other upstream 674631 40335210 ~ 40335440 (-)
G259259 sdpr other upstream 2103238 41763817 ~ 41767588 (-)
G259576 LOC106599288 other upstream 2625051 42285630 ~ 42327995 (-)
G255916 NA non-coding upstream 10429 39657027 ~ 39657546 (-)

Expression


Co-expression Network