LOC110519963 (LOC106586016)


Basic Information

Item Value
gene id LOC110519963
gene name LOC106586016
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39706441 ~ 39709665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596883.2
GCTGTGTATGCAGTGGCTAGACTTTAGCAAAGCAGAGAAGGCTGTGTGTGGGGCATCTTGCAGTGCTGTGCTGGAGGAAGGTTACAGTAAGTTGACAGTACTTGGCAGTTGACAGTGGTTCTACTAGCTAACAGAAGTTGTAGGAAACAGACTAAAAACAGACTGCATCTCTCCGAGCGAGCTCCATATGCAGTAGATAGAGAAGGCCACAGGGCAGGGGTAACAGTGTAGGACAATTCTTAGGTTGACTGGAGGTAGACTGGGACCAATAGTGCAAGTACTGCAGCCATGCAACACCTGTTGCACCAGCCACTGCTTCTCAATGGAAACAAATACCTGCAGCAGAAGTGGGACAAGGCCTCCTATGAAATGCATCTGAGAAAGGTCAAATCAGCGAAACCCACCATCGACACAACTGCACCTAAAACCTATGGTCACCTTGCCCTCAAAATGAAGAAACAAAAGTTTCAGGAGCAAAGCATGTCCAAAATTCAGAGGGAAAACAATATGCTGCTTGAGAAAATATCTCACATCATGAGGACTACTGGTCGCATCGACAACAGGAACGACTATGAAAACAAAAGTGCCAGCCTCACTACAGCATTAAGGACTGGCATGAGGACTGGCTCAAGACAATCAAGCTCATGGAGAGCATTGCACGATATCCACGAAGAGTTAGTGACTAAAAGGCCAATCCTATAGGGACAAGGCCAGGCCAGTAATGAAGAGCAGCAACACTGAGACTGAAGAAAAGGACAGTCTTCATGCGGAACAGAGCTCACACAGCAGCATCACTCAC
>XM_021596880.2
GCTGTGTATGCAGTGGCTAGACTTTAGCAAAGCAGAGAAGGCTGTGTGTGGGGCATCTTGCAGTGCTGTGCTGGAGGAAGGTTACAGTAAGTTGACAGTACTTGGCAGTTGACAGTGGTTCTACTAGCTAACAGAAGTTGTAGGAAACAGACTAAAAACAGACTGCATCTCTCCGAGCGAGCTCCATATGCAGTAGATAGAGAAGGCCACAGGGCAGGGGTAACAGTGTAGGACAATTCTTAGGTTGACTGGAGGTAGACTGGGACCAATAGTGCAAGTACTGCAGCCATGCAACACCTGTTGCACCAGCCACTGCTTCTCAATGGAAACAAATACCTGCAGCAGAAGTGGGACAAGGCCTCCTATGAAATGCATCTGAGAAAGGTCAAATCAGCGAAACCCACCATCGACACAACTGCACCTAAAACCTATGGTCACCTTGCCCTCAAAATGAAGAAACAAAAGTTTCAGGAGCAAAGCATGTCCAAAATTCAGAGGGAAAACAATATGCTGCTTGAGAAAATATCTCACATCATGAGGACTACTGGTCGCATCGACAACAGGAACGACTATGAAAACAAAAGTCTCTGCAGAGAGATGCAACAGCAGGAGTTGCTCCGTATCACCAAAGATAACCAGTTGATCCTTCTTCGTCTGACCCAGTGCCAGCCTCACTACAGCATTAAGGACTGGCATGAGGACTGGCTCAAGACAATCAAGCTCATGGAGAGCATTGCACGATATCCACGAAGAGTTAGTGACTAAAAGGCCAATCCTATAGGGACAAGGCCAGGCCAGTAATGAAGAGCAGCAACACTGAGACTGAAGAAAAGGACAGTCTTCATGCGGAACAGAGCTCACACAGCAGCATCACTCACAATGGCAAAAGGGGAGTGTGAGGAAGAACCTGATCAACAGGAAGAGGAGGCGGGCCTGTAGGAAACACCTAAGTCATCTGACACACCAAAGGTCCTACATCTGAAAGTCCCCCAATACCTGAACCCCCTCACACACCTGACACACTAAGCACATTAACAGACCTGACTCCCAAGTCAAAGACTGAGAATAGGTGTAAG
>XM_021596877.2
GCTGTGTATGCAGTGGCTAGACTTTAGCAAAGCAGAGAAGGCTGTGTGTGGGGCATCTTGCAGTGCTGTGCTGGAGGAAGGTTACAGTAAGTTGACAGTACTTGGCAGTTGACAGTGGTTCTACTAGCTAACAGAAGTTGTAGGAAACAGACTAAAAACAGACTGCATCTCTCCGAGCGAGCTCCATATGCAGTAGATAGAGAAGGCCACAGGGCAGGGGTAACAGTGTAGGACAATTCTTAGGTTGACTGGAGGTAGACTGGGACCAATAGTGCAAGTACTGCAGCCATGCAACACCTGTTGCACCAGCCACTGCTTCTCAATGGAAACAAATACCTGCAGCAGAAGTGGGACAAGGCCTCCTATGAAATGCATCTGAGAAAGGTCAAATCAGCGAAACCCACCATCGACACAACTGCACCTAAAACCTATGGTCACCTTGCCCTCAAAATGAAGAAACAAAAGTTTCAGGAGCAAAGCATGTCCAAAATTCAGAGGGAAAACAATATGCTGCTTGAGAAAATATCTCACATCATGAGGACTACTGGTCGCATCGACAACAGGAACGACTATGAAAACAAAAGTGCCAGCCTCACTACAGCATTAAGGACTGGCATGAGGACTGGCTCAAGACAATCAAGCTCATGGAGAGCATTGCACGATATCCACGAAGAGTTAGTGACTAAAAGGGACAAGGCCAGGCCAGTAATGAAGAGCAGCAACACTGAGACTGAAGAAAAGGACAGTCTTCATGCGGAACAGAGCTCACACAGCAGCATCACTCACAATGGCAAAAGGGGAGTGTGAGGAAGAACCTGATCAACAGGAAGAGGAGGCGGGCCTGTAGGAAACACCTAAGTCATCTGACACACCAAAGGTCCTACATCTGAAAGTCCCCCAATACCTGAACCCCCTCACACACCTGACACACTAAGCACATTAACAGACCTGACTCCCAAGTCAAAGACTGAGAATAGGTGTAAGCACAAGGACATTAAGAAGGGGTAAAGTAATTTGTATATTTGGTAGATTATTTACATTTGCAATGTCTCCAGATGTTATTTGAAAATATATTACTGGCTTGTAGTATTAAAGGAATTTATAACTTCTCGTCTTGGGATCAGATGCCTTTGCCACCTTTATGCGAAATCAATGCACAATGCATGTTAGCTACACAATAAATAGTTGTCAAAACAAAGGTTCAATCA
>XM_021596878.2
GCTGTGTATGCAGTGGCTAGACTTTAGCAAAGCAGAGAAGGCTGTGTGTGGGGCATCTTGCAGTGCTGTGCTGGAGGAAGGTTACAGTAAGTTGACAGTACTTGGCAGTTGACAGTGGTTCTACTAGCTAACAGAAGTTGTAGGAAACAGACTAAAAACAGACTGCATCTCTCCGAGCGAGCTCCATATGCAGTAGATAGAGAAGGCCACAGGGCAGGGGTAACAGTGTAGGACAATTCTTAGGTTGACTGGAGGTAGACTGGGACCAATAGTGCAAGTACTGCAGCCATGCAACACCTGTTGCACCAGCCACTGCTTCTCAATGGAAACAAATACCTGCAGCAGAAGTGGGACAAGGCCTCCTATGAAATGCATCTGAGAAAGGTCAAATCAGCGAAACCCACCATCGACACAACTGCACCTAAAACCTATGGTCACCTTGCCCTCAAAATGAAGAAACAAAAGGAGCAAAGCATGTCCAAAATTCAGAGGGAAAACAATATGCTGCTTGAGAAAATATCTCACATCATGAGGACTACTGGTCGCATCGACAACAGGAACGACTATGAAAACAAAAGTGCCAGCCTCACTACAGCATTAAGGACTGGCATGAGGACTGGCTCAAGACAATCAAGCTCATGGAGAGCATTGCACGATATCCACGAAGAGTTAGTGACTAAAAGGGACAAGGCCAGGCCAGTAATGAAGAGCAGCAACACTGAGACTGAAGAAAAGGACAGTCTTCATGCGGAACAGAGCTCACACAGCAGCATCACTCACAATGGCAAAAGGGGAGTGTGAGGAAGAACCTGATCAACAGGAAGAGGAGGCGGGCCTGTAGGAAACACCTAAGTCATCTGACACACCAAAGGTCCTACATCTGAAAGTCCCCCAATACCTGAACCCCCTCACACACCTGACACACTAAGCACATTAACAGACCTGACTCCCAAGTCAAAGACTGAGAATAGGTGTAAGCACAAGGACATTAAGAAGGGGTAAAGTAATTTGTATATTTGGTAGATTATTTACATTTGCAATGTCTCCAGATGTTATTTGAAAATATATTACTGGCTTGTAGTATTAAAGGAATTTATAACTTCTCGTCTTGGGATCAGATGCCTTTGCCACCTTTATGCGAAATCAATGCACAATGCATGTTAGCTACACAATAAATAGTTGTCAAAACAAAGGTTCAATCA
>XM_021596879.2
GCTGTGTATGCAGTGGCTAGACTTTAGCAAAGCAGAGAAGGCTGTGTGTGGGGCATCTTGCAGTGCTGTGCTGGAGGAAGGTTACAGTAAGTTGACAGTACTTGGCAGTTGACAGTGGTTCTACTAGCTAACAGAAGTTGTAGGAAACAGACTAAAAACAGACTGCATCTCTCCGAGCGAGCTCCATATGCAGTAGATAGAGAAGGCCACAGGGCAGGGGTAACAGTGTAGGACAATTCTTAGGTTGACTGGAGGTAGACTGGGACCAATAGTGCAAGTACTGCAGCCATGCAACACCTGTTGCACCAGCCACTGCTTCTCAATGGAAACAAATACCTGCAGCAGAAGTGGGACAAGGCCTCCTATGAAATGCATCTGAGAAAGGTCAAATCAGCGAAACCCACCATCGACACAACTGCACCTAAAACCTATGGTCACCTTGCCCTCAAAATGAAGAAACAAAAGTTTCAGGAGCAAAGCATGTCCAAAATTCAGAGGGAAAACAATATGCTGCTTGAGAAAATATCTCACATCATGAGGACTACTGGTCGCATCGACAACAGGAACGACTATGAAAACAAAAGTCTCTGCAGAGAGATGCAACAGCAGGAGTTGCTCCGTATCACCAAAGATAACCAGTTGATCCTTCTTCGTCTGACCCAGTGCCAGCCTCACTACAGCATTAAGGACTGGCATGAGGACTGGCTCAAGACAATCAAGCTCATGGAGAGCATTGCACGATATCCACGAAGAGTTAGTGACTAAAAGGGACAAGGCCAGGCCAGTAATGAAGAGCAGCAACACTGAGACTGAAGAAAAGGACAGTCTTCATGCGGAACAGAGCTCACACAGCAGCATCACTCACAATGGCAAAAGGGGAGTGTGAGGAAGAACCTGATCAACAGGAAGAGGAGGCGGGCCTGTAGGAAACACCTAAGTCATCTGACACACCAAAGGTCCTACATCTGAAAGTCCCCCAATACCTGAACCCCCTCACACACCTGACACACTAAGCACATTAACAGACCTGACTCCCAAGTCAAAGACTGAGAATAGGTGTAAGCACAAGGACATTAAGAAGGGGTAAAGTAATTTGTATATTTGGTAGATTATTTACATTTGCAATGTCTCCAGATGTTATTTGAAAATATATTACTGGCTTGTAGTATTAAAGGAATTTATAACTTCTCGTCTTGGGATCAGATGCCTTTGCCACCTTTATGCGAAATCAATGCACAATGCATGTTAGCTACACAATAAATAGTTGTCAAAACAAAGGTTCAATCA
>XM_021596881.2
GCTGTGTATGCAGTGGCTAGACTTTAGCAAAGCAGAGAAGGCTGTGTGTGGGGCATCTTGCAGTGCTGTGCTGGAGGAAGGTTACAGTAAGTTGACAGTACTTGGCAGTTGACAGTGGTTCTACTAGCTAACAGAAGTTGTAGGAAACAGACTAAAAACAGACTGCATCTCTCCGAGCGAGCTCCATATGCAGTAGATAGAGAAGGCCACAGGGCAGGGGTAACAGTGTAGGACAATTCTTAGGTTGACTGGAGGTAGACTGGGACCAATAGTGCAAGTACTGCAGCCATGCAACACCTGTTGCACCAGCCACTGCTTCTCAATGGAAACAAATACCTGCAGCAGAAGTGGGACAAGGCCTCCTATGAAATGCATCTGAGAAAGGTCAAATCAGCGAAACCCACCATCGACACAACTGCACCTAAAACCTATGGTCACCTTGCCCTCAAAATGAAGAAACAAAAGGAGCAAAGCATGTCCAAAATTCAGAGGGAAAACAATATGCTGCTTGAGAAAATATCTCACATCATGAGGACTACTGGTCGCATCGACAACAGGAACGACTATGAAAACAAAAGTCTCTGCAGAGAGATGCAACAGCAGGAGTTGCTCCGTATCACCAAAGATAACCAGTTGATCCTTCTTCGTCTGACCCAGTGCCAGCCTCACTACAGCATTAAGGACTGGCATGAGGACTGGCTCAAGACAATCAAGCTCATGGAGAGCATTGCACGATATCCACGAAGAGTTAGTGACTAAAAGGGACAAGGCCAGGCCAGTAATGAAGAGCAGCAACACTGAGACTGAAGAAAAGGACAGTCTTCATGCGGAACAGAGCTCACACAGCAGCATCACTCACAATGGCAAAAGGGGAGTGTGAGGAAGAACCTGATCAACAGGAAGAGGAGGCGGGCCTGTAGGAAACACCTAAGTCATCTGACACACCAAAGGTCCTACATCTGAAAGTCCCCCAATACCTGAACCCCCTCACACACCTGACACACTAAGCACATTAACAGACCTGACTCCCAAGTCAAAGACTGAGAATAGGTGTAAGCACAAGGACATTAAGAAGGGGTAAAGTAATTTGTATATTTGGTAGATTATTTACATTTGCAATGTCTCCAGATGTTATTTGAAAATATATTACTGGCTTGTAGTATTAAAGGAATTTATAACTTCTCGTCTTGGGATCAGATGCCTTTGCCACCTTTATGCGAAATCAATGCACAATGCATGTTAGCTACACAATAAATAGTTGTCAAAACAAAGGTTCAATCA

Function

NR:

description
uncharacterized protein C17orf105-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596883.2 False 799 mRNA 0.47 5 39706441 39709243
XM_021596880.2 False 1076 mRNA 0.48 5 39706441 39709441
XM_021596877.2 False 1208 mRNA 0.45 5 39706441 39709665
XM_021596878.2 False 1202 mRNA 0.45 5 39706441 39709665
XM_021596879.2 False 1287 mRNA 0.45 5 39706441 39709665
XM_021596881.2 True 1281 mRNA 0.45 5 39706441 39709665

Neighbor

gene id symbol gene type direction distance location
LOC110519960 LOC106586058 coding upstream 38144 39658753 ~ 39668297 (+)
LOC110519956 LOC105026395 coding upstream 85363 39608169 ~ 39621078 (+)
trnaf-gaa NA coding upstream 312728 39393641 ~ 39393713 (+)
LOC110519950 LOC106586053 coding upstream 492337 39171897 ~ 39214104 (+)
LOC110519946 NA coding upstream 945951 38635946 ~ 38760490 (+)
LOC110519964 LOC106586025 coding downstream 4025 39713690 ~ 39741849 (+)
LOC110519965 LOC106586023 coding downstream 36109 39745774 ~ 39769426 (+)
asmtl asmtl coding downstream 60098 39769763 ~ 39782404 (+)
LOC110519969 LOC106586020 coding downstream 730375 40440040 ~ 40452542 (+)
dnah7 dnah7 coding downstream 751496 40461161 ~ 40702678 (+)
G255357 NA non-coding upstream 34915 39671307 ~ 39671526 (+)
G255355 NA non-coding upstream 35708 39670104 ~ 39670733 (+)
G255349 NA non-coding upstream 51938 39654256 ~ 39654503 (+)
G255348 NA non-coding upstream 52982 39653188 ~ 39653459 (+)
G255346 NA non-coding upstream 57540 39647819 ~ 39648901 (+)
G255407 NA non-coding downstream 77338 39787003 ~ 39787277 (+)
G255433 NA non-coding downstream 108675 39818340 ~ 39818548 (+)
G255434 NA non-coding downstream 109955 39819620 ~ 39819944 (+)
G255442 NA non-coding downstream 118155 39827820 ~ 39828046 (+)
G255444 NA non-coding downstream 119932 39829597 ~ 39829905 (+)
G254816 NA other upstream 861885 38843510 ~ 38844556 (+)
G254445 NA other upstream 1105575 38600487 ~ 38600866 (+)
G254204 NA other upstream 1264707 38441166 ~ 38441734 (+)
G253834 LOC100136012 other upstream 1613707 38092322 ~ 38092734 (+)
G261749 NA other downstream 4542404 44252069 ~ 44252551 (+)
G262037 NA other downstream 4810754 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 6129256 45838921 ~ 45839480 (+)
G263710 NA other downstream 6224454 45934119 ~ 45934418 (+)

Expression


Co-expression Network