LOC110519976 (LOC100194537)


Basic Information

Item Value
gene id LOC110519976
gene name LOC100194537
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42196466 ~ 42198481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974101.1
GTGGGGGCCCTGTGTATTTCTGCTGAGTGTACCCCCGGCCCTGTCAGATTTCTGTCACTGCGGAAAGGGACATGGCTCCTAGTGTGACAAATGACGAATGCAGCAGCCGGTGGGTGTGGGTTATTTTCTCAGAAAAGAGCCTGACAAACAAGCAGGGAGGAATGTGTGCCCTGTTATGTGGGAGGGATCAGGTGTCGCTGGCTGTGAAGGGCTGGTATAAAGGACAGGGCTGCTATTCCCCAGTCAGAACATATATCAGCACTTCAGCGGACTCTAAAGCATCAACTACCAAAGCAAGAGGCTCAGCCCTCAGCCTCAAGTTATTGGCTTGTTAAAGCCTATAGGGAAAGAATAAAAGTTGTCAATGACCCACTGCGAAGTTTTCAAGCTCAACATTTAAGGAGAAGCCTATTCCAACATGGACATCCAGAGGACCGGCTCGTTGGTGCGTCCACCCAGCCCCATGGAGAGCCTGGAGAAGCAGCTGAGCTGCCCTATCTGCCTGGAGATGTTCACCAAGCCCGTGGTCATCCTGCCCTGCCAGCACAACCTGTGCCGTGGCTGTGCCAGTGACCTCTACGACTCACGCAACCCCTACCGCTTCTCGGGCGGCGTCTTCCGCTGCCCCACCTGCCGCTTCGAGGTGGTCTTGGACCGCCATGGCGTTCACGGACTTCAGCGCAACCTGCTGGTGGAGAACATCATTGACATCTACAAGCAACAGCAGGAGGGTGGTGGGGGTAGTGGCAGTGGAGACAGCACAGAGACTCCACTGAAGCCCAAGGACTCCAAGGAACCCATGTGCCAGGAGCACGAGGAGGAGAAAATCAACATCTACTGTGTGACCTGCCAGATGCCCACCTGCTCCATGTGCAAGGTGTTTGGTCAGCACAAGGACTGTGAGGTGTCACCACTGGCCAGTGTCTACCAGGTGCAGAAGGGCGAGCTGAGCAACGCTATCGACACCCTAGTGGCAGGCAACGGGCGCCTTCAGGCCCTCCTCAACCAGATGGAGGATACATGTCAGGCGGTGCAGGACAACGCACAGCGTGCCAAGCAAAGCCTAGGCGAGCGCTTTGACCTGCTCTACGCAGTGCTCGAGGAGCGCAAAAGCCTGCTGCTGGAACAGATCGGCAAGGAGCAGGACGAGAAGGTGACTGCGTTGCGGGTGCTGGCCCAGCACTACAGCGAGCGACTGCAGGCGGGATCAGAGCTGACGGACACAGCGGTGCGGGCCCTGGAGCAGAGCGGCGCAGCAGAGTTCCTGCTGGCCTCCAAGGGCCTTATCACACAGACCAAGGACACCGCCAAGATCTCCCTGGGCGAGGAGAGGCCCGAGCCGGGCTTTGAGAAGATGGACCATTTCACGCTGTCCACTGAGCATGTGGAGGCCATCCTGGCCAAGATGGACTTTGGAATGGTCGAAGACGATGCATTCGAGGATGCCGAAGGGGACGAAGAAGAGGAGGAATGATGAAACTGGAAAATATACAAACTGAACAAACTATTTACTACTTTTGAAGGTTCTTTTAACCTGAATGTTCCTGGCAGGGACTCTAGTTGCAATGTTTCAATGATATTAAGAGAAGTTAGGAGTaaagttttaaaatgtttttatacgTAGTTGATTGACTTGGATACCATGGCTTTCCCCAGTTTTGAgtttaatatttttgttttttttgtactcTTAACTTTGCCTTTTTGTAaacataatattttttttaatactttTGTATTTCCATATCAGATTTATTCTGATCTATTTGTTATGTACTTTAGGTTGAATATCCTCTCACATTGTTTACACTTGAATACTTTAACACATGTAAAGATTGAGATGGGAAAGTAGTTTTGATTTGTAGTTTCTCATCGACATCTAGAATGCCTATGGTTGTATCAAATTGATAAATTATTTTGTGCACTAAACTGGCAAGAGAATATTTCAACAGATCTGAAATAAAGGGTGTTTCAAATGACTCAA

Function

NR:

description
LOC394070 protein-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974101.1 True 1984 mRNA 0.50 2 42196466 42198481

Neighbor

gene id symbol gene type direction distance location
LOC110519975 LOC106586062 coding upstream 35780 41987255 ~ 42160686 (+)
LOC110519974 LOC106586063 coding upstream 231225 41922501 ~ 41965278 (+)
spegb LOC106586064 coding upstream 281144 41786953 ~ 41915322 (+)
LOC110519972 sdpr coding upstream 428854 41740090 ~ 41767612 (+)
LOC110519971 tmeff2 coding upstream 470711 41554471 ~ 41725755 (+)
LOC110519988 LOC106586103 coding downstream 263056 42461537 ~ 42534154 (+)
LOC110519991 cssa25h2orf47 coding downstream 345140 42543621 ~ 42550621 (+)
pgap1 pgap1 coding downstream 363659 42562140 ~ 42590366 (+)
LOC110519981 hecw2 coding downstream 418088 42616569 ~ 42682056 (+)
LOC110519990 stk17b coding downstream 498065 42696546 ~ 42715828 (+)
G258539 NA non-coding upstream 126254 42019252 ~ 42070212 (+)
G258538 NA non-coding upstream 179443 42016740 ~ 42017023 (+)
G258447 NA non-coding upstream 346235 41850004 ~ 41850231 (+)
G258446 LOC106608106 non-coding upstream 346703 41849351 ~ 41849763 (+)
G258650 NA non-coding downstream 29185 42227666 ~ 42227968 (+)
G258657 NA non-coding downstream 34624 42233105 ~ 42233311 (+)
G258664 NA non-coding downstream 43382 42241863 ~ 42242082 (+)
G258682 NA non-coding downstream 125990 42324471 ~ 42327172 (+)
G258784 NA non-coding downstream 245383 42443864 ~ 42444118 (+)
LOC110519969 LOC106586020 other upstream 1744286 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 2528378 39658753 ~ 39668297 (+)
G254816 NA other upstream 3351910 38843510 ~ 38844556 (+)
G254445 NA other upstream 3595600 38600487 ~ 38600866 (+)
G254204 NA other upstream 3754732 38441166 ~ 38441734 (+)
G261749 NA other downstream 2053588 44252069 ~ 44252551 (+)
G262037 NA other downstream 2321938 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 3640440 45838921 ~ 45839480 (+)
G263710 NA other downstream 3735638 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 3877003 46075484 ~ 46079425 (+)

Expression


Co-expression Network