LOC110520683


Basic Information

Item Value
gene id LOC110520683
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42455124 ~ 42457706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039884.1
attcttgtacagcctagttgGTGTGGGGTATGTACAATGAATTCATATTGTGGTCTGCTCTCCAAGGCTGGTCTTTGGTTTGATCTTCACCTACAATCAGCTAAATTAGAGAGACAAACCATCAAAATTCTGCACATTCTTTCCTGGCTTCACATTAACTTGTGCCTACTTGTGTGCTTGTGAGTTCTTTAAGCTAAAACTACAACACCATATATTCCATTCCTTGACTTGCTGGCTTTGTCTGTACCAGTAACAGAGAGGCCAGGACTTGACTTACAATTCAATAAGGATGAGTTTAAGTGCACTTTACCCACCGTAGACTGTGCCTACCTCACCCAGGTGGTATGTCTGAATGATGTCACACTTCGCTTTGAGATCTGGGATAATCCGGAGGAGCCCACGATGCACTGGTGGTGTACGATATCAGCAAACAGtgcactcgtgtgtgtgtgcgcacgggTGGGTGTGTGTATTTAGGAGAGCTTCATAAGGTCCCAGCTGTGGCTTAGGGAGCTGGAGAAGCACTGTATCCCAGGTTCCATCGTGAGGGTTCTACTAGGGAACAAGGGGGACATTTCAGAGCTGCGCCAGGAAGGACATAGTCTTGCCATTGACTGAGGCTTGCTTTTTATGGAGACCTTGGCCAATTCAGGGAATCAAGTCAGTGAACTGATGCTGGCTATTGCCCAGGGTGAAGAGGAGTGTGATTCAGCAGCAAGTCAGCCTGATAGAGTGGCAGGAGACAGTTAGTGAACCTGCACTACTCTGAGAACCTACATCAGCCACTGGCAATCTGTTGCCCCTCCATTGGACCCTTATGTGTGTTCTATGTGGATAGGTGTAtaggtttgtgtgtatgtgtttgtgtgtgtgttgttgttaagGGAGATGATAAGATTACAGACCGGATGGAACTGCAGTTCCCCATGCCCTTTTAGTTTGATCACCCAAATGTGAAATCCTTAAGGACAGAGGAGAAACTATGTTCAAAGATTTAAGGTTAACCAAAATCAAACTTTTCCTTacttatgtacagtgcattcggaaagtattcagaccccttctctttttccacatttgtgactcgtttcaggaaacgaTGTATGTCGCGCGTCACTGCTTCACAGGAGTGCCATTTTATCGTAAACCTTCtttaatcaaaatgcattttgggtcagaaatgccttctgtaactttcatgtgccttaatagcaAACTTGTataccatctgtaaatatgaataaaattgttaaattatgagcctagtaggtttagccacggaaaaagtcagcaaccttcccgctagacATGAGTGGACTGGATATGCCAAGAGTTGAG

Function

NR:

description
ras-related protein Rab-17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039884.1 True 1338 mRNA 0.44 5 42455124 42457706

Neighbor

gene id symbol gene type direction distance location
LOC110519982 LOC106586070 coding downstream 90856 42339910 ~ 42364268 (-)
LOC118936375 LOC106581667 coding downstream 115470 42334907 ~ 42339654 (-)
LOC110519978 LOC106586070 coding downstream 120329 42329639 ~ 42334795 (-)
col6a3 LOC106598405 coding downstream 125497 42291728 ~ 42329627 (-)
LOC110519979 LOC106586061 coding downstream 163519 42243576 ~ 42291605 (-)
LOC118955837 NA coding upstream 134660 42592366 ~ 42617176 (-)
LOC110519987 LOC106586109 coding upstream 489038 42946744 ~ 43004057 (-)
LOC110519985 LOC106586111 coding upstream 557994 43015700 ~ 43051414 (-)
LOC110519993 LOC106586116 coding upstream 1063625 43521331 ~ 43626170 (-)
LOC118956029 NA coding upstream 1249175 43706881 ~ 43741802 (-)
G259700 NA non-coding downstream 7610 42447287 ~ 42447514 (-)
G259691 NA non-coding downstream 15618 42439280 ~ 42439506 (-)
G259685 NA non-coding downstream 21706 42433201 ~ 42433418 (-)
G259579 LOC106586070 non-coding downstream 152615 42290259 ~ 42319385 (-)
G259779 NA non-coding upstream 128578 42586284 ~ 42590360 (-)
G259830 NA non-coding upstream 209289 42666995 ~ 42741571 (-)
G259828 NA non-coding upstream 222285 42679991 ~ 42682741 (-)
G259941 NA non-coding upstream 372790 42830496 ~ 42894992 (-)
G259954 nckap5 non-coding upstream 398613 42856319 ~ 42863117 (-)
G259576 LOC106599288 other downstream 127129 42285630 ~ 42327995 (-)
G259259 sdpr other downstream 687536 41763817 ~ 41767588 (-)
G256632 NA other downstream 2119684 40335210 ~ 40335440 (-)
G261580 NA other upstream 1531818 43989524 ~ 44031505 (-)
G262993 NA other upstream 2552466 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 2641634 45099333 ~ 45104286 (-)
G263274 NA other upstream 3078626 45536332 ~ 45537542 (-)
G265988 NA other upstream 5141512 47599218 ~ 47599815 (-)

Expression


Co-expression Network