LOC118955837


Basic Information

Item Value
gene id LOC118955837
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42592366 ~ 42617176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005045624.1
GGATTTATGGACGGGCGGGGTACCGCTTTAGGGGGCCCAAGTCCACCGCAGGGGTGTAGAAGTACCCTGGGTTTGAGTCACGTACAGCGTCGGCATCACTCCTTCGGTTGGCAGCACCTTTGGTGTGAAATTTTCGGGTTGCGGAGGCAGGTCGGCCTTTTTGTAGCAAAACGTCACCGTGTCTAAAGGTGCGCGCTAGCAACACCATTCTCCTGAATTATTACAACTACACGGTTCGTTTTGTCTTCTTTTCAGCGTATCCCCCCATATTTGCTTCTTCATCGCAATGCGCCTTCTACACCCTCACGAATAAGGTCCTCCCGATCATCTTCTCTGGCAGCAGATTCTCAAATCCGAACGCCCTGTCCCGCAAGCAATGCAGGTTTGGAGCCAAACCTACCGAGAGTGGGCACCAGAAAAGAAAAGCAAGAAAGGGAAGAAAGAGTTACAGCAAGCCACAATAGAGTTCCTCTGGAGAGGCCTGCCTCAGATGAATGAGGCAGAGGGCAACCCACCCAATACCACCACCTCATCTCACTGAAGAACGAAGAAGGCAAGACTGCGAGGAGTACATGTAAAGTACCATGGTCTAAGAGAGAGAGGCGAAATGAATGAGTAGTGCCGAGGGCAAGTGGGTCACGAGAGGAATCACACTAATACATGATCACGTACAAACGTGTAATAGAGTTAAGAATGTGCCGTAACCTCACTCCACATCTAGCTTGAAGTGTCGCGGATGGTGCCATCCAATTGGTACCTTTTGGGTGGCTCAAACTATCGATAGGTTTTCAAGGAGGATGTTCATGTGTGTTTGCGAATAGAGGATCACTGGTTCGAGCCCAgtgtgggacagggacagtggagggagaTATATACTGTTTTTGTATTaccactacacacctgattcaaatcattAACACTTGATGATAAGTTGATCATTTGAATATGTTGTGGAGGCAAAAACAAcaatgtgcacccctttgggtccccaggaccagcctaagAAGTGCTGTTCTATCTAGACTAATCACATTCCCCACCTCACCTATCCCTGGAGACCGTATGTAGACATGATACAACTCTGTGAACACATTGACCCTACTATAATGAATGTTTGTTACGTGTGCCTATTTGCTTTTTTTGCAGACGACAAGCATGTAGGTTAGATATGAAAGCATTGCTTGGTTTTTAAAAAAAGTGTTGCTACCGTTTGCAAACAAAGTAACTGTGACACTTGTGTTTTTAAGGTGATTCCCTAGAGGACTCTAGTCCTCggaatgcaattagtttaatcaggtgtgttagctgtgGAGGACTGGAGTACAACGATGAGGATGATCAGATCGAGATGGAATCAACAGATTCAATGCAAGAAGCAGCTTGATCTGATACATGGCTCTACTGATTCTAATAactagctggttgataagctacAGGAGGGTAACTTTCCAGGAGATCTGAACCTCCACCTAGTCCCCCCACCCTTTTCTCTtgtaacctctctccctctactgtagCCGTGTTTGGTGATTGGACTGAGAGAGATGTAAACACAGACAGCTTGCAGCGACCACATTACATCATAATTTAAAATAAAGTGAATCATCTTTGTTTCATATTGTTGTTTGTTTGTGCTAAGGTTAATTTGAAAAGTACTGATGAATGTATTACAAGTTGACTTGAGTGACATATGTTTtttatgttttggtattgtatTACTTTCTGTAACTGGTGTCATCACCTGTTGCTTGCATTTCAATAGCTAAGTTGTTTTTGAATTACAcacaggggcagctctagcttTTTGGAGGCCCTTTTTGGAGGCCCCAATTTTTGTAACAATGCAGAGGGCTCCGcttagctccacattgacatgattggttgacggtaggtaggggcagtacatcctgtataaacaaaCTCACTCCCTTGACAATTTGAATTGTTGTTGAATTTGCAGTGCACTTTGACGAAAGGCTATCAGAACAAGTtcataaaaaacatattttcatgtAGGGATTTCAAAGACACGAAAATGAGTTTGAACTCCTGGAAAGAGATTGGGTAGGTAATGGGGATAAATGcagtaaagaggtcaatggaatgCAGACCGTGGGGGGATAGGACACTGGATTGGcgcacattcaacaaatctgatctaacaaagtggatatttgtCAATTCCGTCATGactgatgtattgtaacaggcccaAAATGTGGTTAATTTTATATATTTGGCTGTTTTTGCTGCCTAACATTAAGTTGTTATCCCTTTTCAGGTTTAGGAAAAGTGACTGACAAATGCTGACTCCCATTCGTATAAGCTGGTAGTGtagctagcatacagaaatcGGTGGTGGTAGTCAAAGTAGTTTTTTACTATAATGCAGTTGATTGATGAAGATGACATGAacatggtttgttgagatcggagtggaagaatttgactgacctgcacagagccctgacctcaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005045624.1 True 2478 mRNA 0.44 3 42592366 42617176

Neighbor

gene id symbol gene type direction distance location
LOC110520683 NA coding downstream 134660 42455124 ~ 42457706 (-)
LOC110519982 LOC106586070 coding downstream 228098 42339910 ~ 42364268 (-)
LOC118936375 LOC106581667 coding downstream 252712 42334907 ~ 42339654 (-)
LOC110519978 LOC106586070 coding downstream 257571 42329639 ~ 42334795 (-)
col6a3 LOC106598405 coding downstream 262739 42291728 ~ 42329627 (-)
LOC110519987 LOC106586109 coding upstream 329568 42946744 ~ 43004057 (-)
LOC110519985 LOC106586111 coding upstream 398524 43015700 ~ 43051414 (-)
LOC110519993 LOC106586116 coding upstream 904155 43521331 ~ 43626170 (-)
LOC118956029 NA coding upstream 1089705 43706881 ~ 43741802 (-)
LOC110519998 LOC106586121 coding upstream 1614823 44231999 ~ 44235888 (-)
G259779 NA non-coding downstream 2006 42586284 ~ 42590360 (-)
G259700 NA non-coding downstream 144852 42447287 ~ 42447514 (-)
G259691 NA non-coding downstream 152860 42439280 ~ 42439506 (-)
G259685 NA non-coding downstream 158948 42433201 ~ 42433418 (-)
G259830 NA non-coding upstream 49819 42666995 ~ 42741571 (-)
G259828 NA non-coding upstream 62815 42679991 ~ 42682741 (-)
G259941 NA non-coding upstream 213320 42830496 ~ 42894992 (-)
G259954 nckap5 non-coding upstream 239143 42856319 ~ 42863117 (-)
G259959 NA non-coding upstream 250673 42867849 ~ 42873169 (-)
G259576 LOC106599288 other downstream 264371 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 272981 42290259 ~ 42319385 (-)
G259259 sdpr other downstream 824778 41763817 ~ 41767588 (-)
G256632 NA other downstream 2256926 40335210 ~ 40335440 (-)
G261580 NA other upstream 1372348 43989524 ~ 44031505 (-)
G262993 NA other upstream 2392996 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 2482164 45099333 ~ 45104286 (-)
G263274 NA other upstream 2919156 45536332 ~ 45537542 (-)
G265988 NA other upstream 4982042 47599218 ~ 47599815 (-)

Expression


Co-expression Network