LOC110519990 (stk17b)


Basic Information

Item Value
gene id LOC110519990
gene name stk17b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42696546 ~ 42715828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596930.2
AGAAGCTGTGGGCATAACGAAGCGGCAAATATCAAACCTGTGGACAGGTGATTGGTAGTAAAAGTAGAAGACGTTTTGGGCACATCGACGAGGGGAAGGATTTTATACCAGATGTTAGCAAACTAGGCACTAAAGTCGCAAATGCCTCAACGATGTCACAAGGGACAGTTTCGGCACGTTTGTCAATCAACCCCACAAGTGCCAACTCTCAGGCTAACCACAACGATGTCTCGGAGGCGGCTTGACAACAGCAATGGACCTACTGGGTTACTTGGAGAAATTCAAACCCTTATCAATACGGAACCAATGGACAGTATGTACGAAATCACCGGCGAGTTGGGCAGGGGGAAATTTGCAGTGGTGAAGCGGTGCATGGAGAAGGCTACGGGAAAGATGTTCGCCGCCAAGTTCCTGCGGAAGCGGAGGCAGGGCCGAGATTGCCGGGCCGAGGTGGTGCACGAGATGGCCGTGCTGGAGGCGGCCCGCAACAACCCTCGTGTGGTCAACCTGCAAGCTGCCTACGAGACAGACCATGACATAATCCTGCTGCTGGAATATGCGGCGGGAGGTGAGATCTTTGACTACTGTGACTGTGATGAGCTGCTCCCAGAGGGCCAGATCACACGCCTGATCAGACAGATGCTGGAGGGCGtccacctcctccaccagacCAGCGTGGTGCACCTGGACCTCAAGCCCCAGAACATTCTCTTGACCAGCCTGGCTCCGCTGGGGGACATAAAGATTGTGGACTTTGGCCTGGCGCGCAAACTGGGCACAGTCGGAGAGCTCCGAGAGATCTTGGGCACGCCCGAGTACGTGGCTCCAGAAATTCTAAACTACGAGCCTATCACCACAGCAACTGACTTGTGGAGTGTGGGGGTGATAGCCTACATGCTGGTGACGGGTGAGTCTCCGTTTGCAGGGGACGACAAACAGGAGACGTACCTGAATGTGTCCCAAGTCAATGTGGACTACAGCCAAGAGGCCTTCTCCAGGGTGTCGGAGCTCGCCGTCGACTTCATCCGCAAGCTGCTGGTCAAAACACCAGAGGACAGGTCCAGTGCAGCCGACTGCATGACCCACCCCTGGCTGTGGCATCAATACCCAATTACCGAGCCCATCACACCACGTACACCCCGCGAGAGGAGCAGCGGTAACAAGTGGGCCGCCCCACCCGAGGACCCAGAAGACAAGGAGAACTTCACCTTGGACTCGCACCACACCCACGCCAAGCGGTTTCGGTTTGAGGTGGAGGGGGAAAGAGCGACGCAAGCGTCCCCCTCCTGTGACCTGCCCTTATGATTTTATTGGTTTTATGCAGCAATGAACCTGCAGGCAGCACTGTTGCCTACCCAAGAGCTATtcagtcctgttctgttctacCGCTCGCTTGTATCCAGTGTGTCCGGCCAAACCAAAGTTAACCAGCTTACTTTGTGATCTAATGAGTAATAGTATTTTATAGTGAGCtgtttttgtcttttgttttgtcTGGTTAATTTATGTCCCTGAATTTACAGAGAATGGGTGGCCATGTATATCTCAAGGGAAATCTATGCTATTCTGTTTTTCCACAAACTTTTAAGAGACATTTTAAACAGTCAGCAAATTATTACTTGACCATTTTTGCCAGAAGGCTAATAAGTTGTCGTAAGTGTTCTTAGACGCCCCAAAGTGTTTTAGTATTTTGTGCTAAAAGCATTCGAATTAACACTGAGCTGTGCAGATACAAGCTAAATCAGTCTATTTGAGGTCGTGAAAGTAAAGTATCCTCGTACTATATGCTTAATTGCTTGACCCAAGATGTGCATTACCTCCCTACTCTCAAACAAGCATCAGCTTCGGGCCATGGCTTATGCCAAGTGGCATATTACATTCCATTCCATCTGACATTCCCTTGTCTAGTTCTTAGGCACTCTACAACACACCACATCTGAAAACacgtcattgaagacaggttttCTATGCACACATTACCCAGCCTTGGCCTGCATAATAAGTAAGCCAATGAGTCACGCTATTTTCTGTCGATTACAGTGTTTATTGTTTACCTGAACTCTCCTGGTTTACAATTCCACAGTAATAGAGGCGGTTTAAGAGGGCTCTAAAAAAGGTGACTCATGGACAGTTCACACCACACCCATGCTTACTCAAATGTTTCTGCAAAGTTGTCAGTTCCTCTTTAATCATTAGCTTAAGGCAAATGTGACTGAAGCACTTTCTATTTATCATCTGGGTATTTCATGAATTACTGGAAAATAACCATGTCCTCTGAAGTGTTTTTAattccatgttttttttaaaaagtataaCTTGAAAACAA
>XM_021596929.2
TGAGCTGACGTTAACCGTTGTTCTTGACAAACaagtaactaacgttagctagcttttCTACAACTAGCTAACAAGTTCTCAACAGCTAAAACATTTAAAACTAGCTAGTTATTTAGCTAGTAACGTTATCCAGCTAATATAACGATGTTAGTAAACGCTAGTTAGCTATAAAACTGCCAACTAACCTTAACTGGTTTAGCACTAAACACATTTCGCTAGCTAGTCTACAGCCTTAACAGGCGCTAATATATTCCTACAGTCAGGCTAACCACAACGATGTCTCGGAGGCGGCTTGACAACAGCAATGGACCTACTGGGTTACTTGGAGAAATTCAAACCCTTATCAATACGGAACCAATGGACAGTATGTACGAAATCACCGGCGAGTTGGGCAGGGGGAAATTTGCAGTGGTGAAGCGGTGCATGGAGAAGGCTACGGGAAAGATGTTCGCCGCCAAGTTCCTGCGGAAGCGGAGGCAGGGCCGAGATTGCCGGGCCGAGGTGGTGCACGAGATGGCCGTGCTGGAGGCGGCCCGCAACAACCCTCGTGTGGTCAACCTGCAAGCTGCCTACGAGACAGACCATGACATAATCCTGCTGCTGGAATATGCGGCGGGAGGTGAGATCTTTGACTACTGTGACTGTGATGAGCTGCTCCCAGAGGGCCAGATCACACGCCTGATCAGACAGATGCTGGAGGGCGtccacctcctccaccagacCAGCGTGGTGCACCTGGACCTCAAGCCCCAGAACATTCTCTTGACCAGCCTGGCTCCGCTGGGGGACATAAAGATTGTGGACTTTGGCCTGGCGCGCAAACTGGGCACAGTCGGAGAGCTCCGAGAGATCTTGGGCACGCCCGAGTACGTGGCTCCAGAAATTCTAAACTACGAGCCTATCACCACAGCAACTGACTTGTGGAGTGTGGGGGTGATAGCCTACATGCTGGTGACGGGTGAGTCTCCGTTTGCAGGGGACGACAAACAGGAGACGTACCTGAATGTGTCCCAAGTCAATGTGGACTACAGCCAAGAGGCCTTCTCCAGGGTGTCGGAGCTCGCCGTCGACTTCATCCGCAAGCTGCTGGTCAAAACACCAGAGGACAGGTCCAGTGCAGCCGACTGCATGACCCACCCCTGGCTGTGGCATCAATACCCAATTACCGAGCCCATCACACCACGTACACCCCGCGAGAGGAGCAGCGGTAACAAGTGGGCCGCCCCACCCGAGGACCCAGAAGACAAGGAGAACTTCACCTTGGACTCGCACCACACCCACGCCAAGCGGTTTCGGTTTGAGGTGGAGGGGGAAAGAGCGACGCAAGCGTCCCCCTCCTGTGACCTGCCCTTATGATTTTATTGGTTTTATGCAGCAATGAACCTGCAGGCAGCACTGTTGCCTACCCAAGAGCTATtcagtcctgttctgttctacCGCTCGCTTGTATCCAGTGTGTCCGGCCAAACCAAAGTTAACCAGCTTACTTTGTGATCTAATGAGTAATAGTATTTTATAGTGAGCtgtttttgtcttttgttttgtcTGGTTAATTTATGTCCCTGAATTTACAGAGAATGGGTGGCCATGTATATCTCAAGGGAAATCTATGCTATTCTGTTTTTCCACAAACTTTTAAGAGACATTTTAAACAGTCAGCAAATTATTACTTGACCATTTTTGCCAGAAGGCTAATAAGTTGTCGTAAGTGTTCTTAGACGCCCCAAAGTGTTTTAGTATTTTGTGCTAAAAGCATTCGAATTAACACTGAGCTGTGCAGATACAAGCTAAATCAGTCTATTTGAGGTCGTGAAAGTAAAGTATCCTCGTACTATATGCTTAATTGCTTGACCCAAGATGTGCATTACCTCCCTACTCTCAAACAAGCATCAGCTTCGGGCCATGGCTTATGCCAAGTGGCATATTACATTCCATTCCATCTGACATTCCCTTGTCTAGTTCTTAGGCACTCTACAACACACCACATCTGAAAACacgtcattgaagacaggttttCTATGCACACATTACCCAGCCTTGGCCTGCATAATAAGTAAGCCAATGAGTCACGCTATTTTCTGTCGATTACAGTGTTTATTGTTTACCTGAACTCTCCTGGTTTACAATTCCACAGTAATAGAGGCGGTTTAAGAGGGCTCTAAAAAAGGTGACTCATGGACAGTTCACACCACACCCATGCTTACTCAAATGTTTCTGCAAAGTTGTCAGTTCCTCTTTAATCATTAGCTTAAGGCAAATGTGACTGAAGCACTTTCTATTTATCATCTGGGTATTTCATGAATTACTGGAAAATAACCATGTCCTCTGAAGTGTTTTTAattccatgttttt

Function

symbol description
stk17b Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and positive regulation of apoptotic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human STK17B (serine/threonine kinase 17b).

NR:

description
serine/threonine-protein kinase 17B-like isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08804 STK17; serine/threonine kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596930.2 False 2326 mRNA 0.48 8 42696546 42715828
XM_021596929.2 True 2352 mRNA 0.48 7 42696840 42715803

Neighbor

gene id symbol gene type direction distance location
LOC110519981 hecw2 coding upstream 14490 42616569 ~ 42682056 (+)
pgap1 pgap1 coding upstream 106180 42562140 ~ 42590366 (+)
LOC110519991 cssa25h2orf47 coding upstream 145925 42543621 ~ 42550621 (+)
LOC110519988 LOC106586103 coding upstream 162392 42461537 ~ 42534154 (+)
LOC110519977 csn8 coding upstream 490998 42175881 ~ 42205548 (+)
LOC110519980 nckap5 coding downstream 30829 42746657 ~ 42883322 (+)
LOC110519992 LOC106586087 coding downstream 179790 42895618 ~ 42944597 (+)
LOC110519989 LOC106581699 coding downstream 335774 43051602 ~ 43083760 (+)
LOC110519984 LOC106586113 coding downstream 453957 43169785 ~ 43513887 (+)
LOC110519994 LOC100380648 coding downstream 1115133 43830961 ~ 43845629 (+)
G258877 NA non-coding upstream 82401 42612387 ~ 42614145 (+)
G258824 NA non-coding upstream 130438 42493455 ~ 42566108 (+)
G258784 NA non-coding upstream 252428 42443864 ~ 42444118 (+)
G258682 NA non-coding upstream 369374 42324471 ~ 42327172 (+)
G258961 NA non-coding downstream 50671 42766499 ~ 42766703 (+)
G259003 NA non-coding downstream 113931 42829759 ~ 42830245 (+)
G259974 NA non-coding downstream 228823 42944651 ~ 42947853 (+)
G260062 NA non-coding downstream 303592 43019420 ~ 43019973 (+)
G260366 NA non-coding downstream 509019 43224847 ~ 43225135 (+)
LOC110519969 LOC106586020 other upstream 2244366 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 3028458 39658753 ~ 39668297 (+)
G254816 NA other upstream 3851990 38843510 ~ 38844556 (+)
G254445 NA other upstream 4095680 38600487 ~ 38600866 (+)
G254204 NA other upstream 4254812 38441166 ~ 38441734 (+)
G261749 NA other downstream 1536241 44252069 ~ 44252551 (+)
G262037 NA other downstream 1804591 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 3123093 45838921 ~ 45839480 (+)
G263710 NA other downstream 3218291 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 3359656 46075484 ~ 46079425 (+)

Expression


Co-expression Network