Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110519992 |
| gene name | LOC106586087 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 42895618 ~ 42944597 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ly6/PLAUR domain-containing protein 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021596932.2 | True | 1116 | mRNA | 0.46 | 3 | 42895618 | 42944597 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110519980 | nckap5 | coding | upstream | 12296 | 42746657 ~ 42883322 (+) |
| LOC110519990 | stk17b | coding | upstream | 179790 | 42696546 ~ 42715828 (+) |
| LOC110519981 | hecw2 | coding | upstream | 213562 | 42616569 ~ 42682056 (+) |
| pgap1 | pgap1 | coding | upstream | 305252 | 42562140 ~ 42590366 (+) |
| LOC110519991 | cssa25h2orf47 | coding | upstream | 344997 | 42543621 ~ 42550621 (+) |
| LOC110519989 | LOC106581699 | coding | downstream | 107005 | 43051602 ~ 43083760 (+) |
| LOC110519984 | LOC106586113 | coding | downstream | 225188 | 43169785 ~ 43513887 (+) |
| LOC110519994 | LOC100380648 | coding | downstream | 886364 | 43830961 ~ 43845629 (+) |
| LOC110519995 | LOC106586118 | coding | downstream | 912492 | 43857089 ~ 43875820 (+) |
| LOC110519997 | lct | coding | downstream | 931667 | 43876264 ~ 43895648 (+) |
| G259003 | NA | non-coding | upstream | 65373 | 42829759 ~ 42830245 (+) |
| G258961 | NA | non-coding | upstream | 128915 | 42766499 ~ 42766703 (+) |
| G258877 | NA | non-coding | upstream | 281473 | 42612387 ~ 42614145 (+) |
| G258824 | NA | non-coding | upstream | 329510 | 42493455 ~ 42566108 (+) |
| G259974 | NA | non-coding | downstream | 54 | 42944651 ~ 42947853 (+) |
| G260062 | NA | non-coding | downstream | 74823 | 43019420 ~ 43019973 (+) |
| G260366 | NA | non-coding | downstream | 280250 | 43224847 ~ 43225135 (+) |
| G260375 | NA | non-coding | downstream | 291658 | 43236255 ~ 43236469 (+) |
| G260432 | NA | non-coding | downstream | 378998 | 43323595 ~ 43417280 (+) |
| LOC110519969 | LOC106586020 | other | upstream | 2443438 | 40440040 ~ 40452542 (+) |
| LOC110519960 | LOC106586058 | other | upstream | 3227530 | 39658753 ~ 39668297 (+) |
| G254816 | NA | other | upstream | 4051062 | 38843510 ~ 38844556 (+) |
| G254445 | NA | other | upstream | 4294752 | 38600487 ~ 38600866 (+) |
| G254204 | NA | other | upstream | 4453884 | 38441166 ~ 38441734 (+) |
| G261749 | NA | other | downstream | 1307472 | 44252069 ~ 44252551 (+) |
| G262037 | NA | other | downstream | 1575822 | 44520419 ~ 44525408 (+) |
| G263547 | LOC106586150 | other | downstream | 2894324 | 45838921 ~ 45839480 (+) |
| G263710 | NA | other | downstream | 2989522 | 45934119 ~ 45934418 (+) |
| G263733 | LOC106586158 | other | downstream | 3130887 | 46075484 ~ 46079425 (+) |
