LOC110519989 (LOC106581699)


Basic Information

Item Value
gene id LOC110519989
gene name LOC106581699
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43051602 ~ 43083760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974135.1
AGTGACGACCTGCCTGTCCAAGACCGAGTGCGGAAGTAAAAACTGTACTGTGCGGGTTCTGGATTCCGTACTCCTGTGGACGGTTTGCAAGATCCTCCACCCGACACAGACTGCTTTCAattcaaaacaaacatttgtgatTACCAGAAGTACACGAGATGGCAGGACGATTACCGGCGTGTGTTGTCGACTGTGGTACAGGatACACAAAGCTGGGGTATGCAGGGAACACAGAGCCACAGTTTATTGTTCCGTCATGTATTGCAATCAAAGAGTCAGCCAAGGTTGGATCAAGGACGGTCAAGGGGGTGGACGACCTGGACTTCTTCATTGGCGACGAGGGGATAGACAAGCCCAATTACGCCACAAAGTGGCCGATCCGTCACGGCATCGTGGAGGACTGGGACCTAATGGAGAGGTTCATGGAGCAGGTCATCTTCAAGTACCTGAGGGCAGAGCCTGAGGACCACTACTTCCTGTTGACAGAGCCTCCTCTGAACACACCAgagaacagagagtacacagcagaGATCATGTTTGAGTCCTTCAACGTCCCAGGGCTCTATATCGCAGTGCAGgctgTCCTGGCACTGGCGGCCTCCTGGACATCCAGACAGGTAGGGGAGAGGACACTGACGGGGACGGTCATCGACAGTGGAGACGGAGTCACCCACGTTATCCCTGTGGCTGAGGGCTACGTCATCGGCAGCTGTATAAAGCACATTCCCATCGCTGGTCGTGACATCACCTACTTCACCCAGCAGCTTCTGAGGGAGCGGGAGGTGGGCATCCCCCCAGAGCAGTCCCTGGAGACAGCCAAGGCAGTCAAGGAGCGGTTCAGCTACGTGTGTCCGGACCTAGTGAAAGAGTTCAGCAAGTACGACACGGACGGCTCCAAGTGGATCAAGCAGTACACCGGCATAAACAACATCAGCAAGAAGGAGTTCACCGTCGACGTAGGCTACGAGCGCTTCCTCGGCCCTGAGATCTTCTTCCACCCGGAGTTTGCCAATCCTGACTTCACCCAGCCCATCTCTGAAGTTGTGGACGAGGTTATCCAGAACTGCCCCATTGATGTCAGACGTCCCCTTTACAAGAACATTGTATTGTCGGGCGGCTCCACCATGTTCAGGGACTTTGGGCGGCGTCTGCAGAGGGACCTGAAGAGGACGGTGGATGCCAGGCTGAAGATGAGCGAGGAGCTGAGCGGGGGCAAGCTCAAGCCCAAACCAATCGATGTGCAAGTCATCACTCATCATATGCAGAGATATGCAGTGTGGTTCGGAGGATCCATGTTAGCATCAACTCCTGAGTTCTACCAGGTATGCCACACCAAAAAGGACTATGAGGAGATTGGCCCTAGCATCTGTCGCCACAACCCCGTGTTCGGAGTCATGTCTTAACTGTGGCCCTCCAACATCCTAATGGTTAGACCGGGTGGGGTcggtagggttgggttgggttgggaggGGAGACAGTTGGTCAGGGGTGGTGAGTTTGTGCTTTTTGATTGCTTGTTCACTCTGGATGTACAGAACGAGAGGCGATAcagagtttttttttgtttttttttatgagaAAAAAAGAAACAGTCCGGCTGGAAAATGTATTGTGAATGttcctttttttgttttgtttttgttttccaaaATGAGGGAAATATGGTTTCTAAACCAAAACAATAAAAGATCATTTCCGGATCTGTCAAGCAACATGCAGAAAGCTAAACGATGATGGTAAGGATGGTGGTGGTTGATGTAATGATGATGACAACATTGATGATAATAAAATCAGAAGTCATAAAACATTATTTATGTTTAAAGAACTTGAGTCCGAGCGATATCTGACGACTCGAAGATATCGTTGATCATGCCAAGGTTATAGAACATATTAATGTCGTCTTTATGTTCCATTTAATTTTTCTGCTTCAAATGCACTTCACTTTGTGTATCACAGCAAGAGCTTGTTTATATTTCGTAAAGGTTTTTTATATGTAAAACTTGGGAAATTGGGGAAAGTTTTTATTGCATACCAGTATCAGCAAGTGACTGTTTTAACCCACAATGCAGCTTTGATACGCAGTATTTTCTTAAGTTAGAAAACTGAAATGTTTCTCCCTCATCATTCCCCCATTGTCTGTCCTTGCTATTCTCCCTTTAATTCTACATTAACATGCCTTCGCTTTCACTTTCGACCATGCCAGATTTCCCTCATCTATGTCTTAGCGAAAGAAAATAAAACGATTCATGAAATGATAACAATGAAATTGAAAGAGCGTGACTGTCGGACCAGTATTGTTAGCctagatttgttttcaaattaaatACCAAATTATTAAAAAAAAGATGGGATTTGTTTATTTAATGCCTCGCAACATTCCAATAAAGGCTCAGATTTGTTTCTTAA

Function

NR:

description
actin-related protein 3-like

GO: NA

KEGG:

id description
K18584 ACTR3, ARP3; actin-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974135.1 True 2406 mRNA 0.47 12 43051602 43083760

Neighbor

gene id symbol gene type direction distance location
LOC110519992 LOC106586087 coding upstream 107005 42895618 ~ 42944597 (+)
LOC110519980 nckap5 coding upstream 168280 42746657 ~ 42883322 (+)
LOC110519990 stk17b coding upstream 335774 42696546 ~ 42715828 (+)
LOC110519981 hecw2 coding upstream 369546 42616569 ~ 42682056 (+)
pgap1 pgap1 coding upstream 461236 42562140 ~ 42590366 (+)
LOC110519984 LOC106586113 coding downstream 86025 43169785 ~ 43513887 (+)
LOC110519994 LOC100380648 coding downstream 747201 43830961 ~ 43845629 (+)
LOC110519995 LOC106586118 coding downstream 773329 43857089 ~ 43875820 (+)
LOC110519997 lct coding downstream 792504 43876264 ~ 43895648 (+)
LOC118956122 NA coding downstream 859364 43943124 ~ 43986958 (+)
G260062 NA non-coding upstream 31629 43019420 ~ 43019973 (+)
G259974 NA non-coding upstream 103749 42944651 ~ 42947853 (+)
G259003 NA non-coding upstream 221357 42829759 ~ 42830245 (+)
G258961 NA non-coding upstream 284899 42766499 ~ 42766703 (+)
G260366 NA non-coding downstream 141087 43224847 ~ 43225135 (+)
G260375 NA non-coding downstream 152495 43236255 ~ 43236469 (+)
G260432 NA non-coding downstream 239835 43323595 ~ 43417280 (+)
G260544 NA non-coding downstream 435280 43519040 ~ 43522754 (+)
G261123 NA non-coding downstream 681449 43765209 ~ 43804202 (+)
LOC110519969 LOC106586020 other upstream 2599422 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 3383514 39658753 ~ 39668297 (+)
G254816 NA other upstream 4207046 38843510 ~ 38844556 (+)
G254445 NA other upstream 4450736 38600487 ~ 38600866 (+)
G254204 NA other upstream 4609868 38441166 ~ 38441734 (+)
G261749 NA other downstream 1168309 44252069 ~ 44252551 (+)
G262037 NA other downstream 1436659 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 2755161 45838921 ~ 45839480 (+)
G263710 NA other downstream 2850359 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 2991724 46075484 ~ 46079425 (+)

Expression


Co-expression Network