LOC110519994 (LOC100380648)


Basic Information

Item Value
gene id LOC110519994
gene name LOC100380648
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43830961 ~ 43845629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596934.2
atttacagtcaggcaACAGTCTAGGCTACAGGGGTCCTGAATTCCACACGCGTGTGTGCGCTCAGCTGCAAGCATGGCAGATCTTCAGATGAGGCTTCTTCGgcagaaaatccagaaaagaaGCGAAAAGAACAAAGAGCGAAAGCTACTTAATAAACAGAAACAAGAGGAAGATAATGGTGACGCAAACAGACTTCCAGAGGAGCGTTGTGATGAAACGAGTCACGGGGCCACAGCAATTTCAAAGCCACAGAATGCCAAACCCACAAAGAAGCCACAAATACAGAAGAATGTGTCTGCAGAGGTGAACACAGAAGAAAAATCTGTCAAGATGAAAAGGAAGCTCAAAACTGCTGAATCGCCAGGTGTGAAAAAAGCCAAGAAGGATGAGGCAGATGATGAGgaggatatggaggaggagagggggttgaCTGTGACTGAGGAGGATGCTGATCAGGGCACAGACAAACCCACACAGCCTCTTGAAGGGGCagaggctggagaggaggaggaagatgatgatgatgacgacgaggaggatgaagagggaagTGAAGATGAGGCGgaaaagggggaaggagagaagtttggggatgatgatgaggaagatGGACCTGAGCTCCCAACTGGCTTGACAGGTGCGTTTGAGGACACATCGTTTGCCTCTTTAACCTCTCTGGTGAGCGAGAACACTCTAAAGGGTGTGAAGGAGATGGGCTTTGACCACATGACCGAGATCCAACACAAAAGCATCCGCCCCCTACTGGAGGGAAGGGATATCCTGGCTGCTGCTAAGACCGGCAGTGGTAAAACCCTGGCCTTCCTCATCCCCTCCATCGAGCTCATCTACAAACTCAAGTTCATGCCCAGGAACGGCACGGGCGTGGTGATCCTGTCCCCAACGCGCGAGTTGGCCATGCAGACGTATGGTGTGATGAAAGAGCTGATGACCCACCACGTGCACACCTTTGGCCTGATTATGGGCGGCAGCAACCGCACGGCCGAGGCCCAAAGGTTGGCCAACGGTGTCAACATCCTGGTGGCCACACCCGGCAGACTGCTGGACCACCTGcagAATACTGCTGGCTTCATGTATAAGAACCTCCAGTGTCTGATCATTGACGAAGCCGACCGTATCCTGGAGGTCGGCTTCGAAGAGGAACTGAAGCAGATCATCAAACTCCTGCCAAAGCGGAGGCAGACCATGCTGTTCTCGGCCACCCAGACCCGTAAGGTGGAGGACCTGGCCCGTATCTCCCTGAAGAAGGAGCCCCTCTACGTGGGCGTGGACGACAACAAGGACAACGCCACCGTGGATGGCCTTGAACAGGGCTATGTGGTGTGTCCGTCTGAGAAGCGCTTCATGCTACTCTTCACCTTCTTGAAGAAGAACCGTAAGAAGAAGCTGATGGTGTTCTTCTCCTCCTGCATGTCGGTCAAGTTCCACTACGAGCTGCTCAACTACATTGACCTGCCCGTCATGGCCATCCACGGGAAGCAAAAGCAGACGAAGCGTACCACCACCTTCTTTCAGTTCTGTAACGCTGACTCTGGCATCCTGTTGTGTACCGACGTGGCGGCCAGAGGCCTGGACATCCCCGAGGTGGACTGGATCGTACAGTATGACCCCCCAGATGACCCCAAGGAATACATCCACAGGGTCGGCAGAACAGCTCGTGGGATCAACGGCATAGGCCACGCCCTCCTGATCCTACGGCCAGAGGAGTTGGGCTTCCTGCGCTTCCTCAAACAGGCCAAGGTTCCTTTGAGTGAGTTTGAATTCTCTTGGGCGAAGATCTCCGATATCCAGGGTCAGCTGGGGAAATTGATTGAGAAGAACTACTACCTGCACAAGTCAGCCCAGGAGGCCTACAAGTCCTACGTGCGGGCGTACGACTCTCATTCACTCAAAGCGATCTACAGCGTCAACACGCTCAACCTCCCCATGGTGGCGCTCTCCTTTGGCTTCAAAGTGCCCCCCTACGTCGACCTCAACGTCCACAGCAAAGGAGGACTGAAGATGACGAAGAGGGGTGGGGGCGGCGGCTTCGGCTACCAGAAGGGCAAGGGTGCTCACAAAGCCAAGATCTTCAAGCACGTCAACAAAGGCAAGGGGGACAAGAGGCAATTCTCTCGCTAGCCTGCGGTCCTTGGGGGATATTACAAAATGGCTTCCTGACCTGGACTCACTTTCTGTCCAGAGACCAATCTATTAGCCTGTTACTGGGCATCGTGTCTCGCTCCCTATTTGTGTGTGAAAGACCAGTCTGTTGGGtctccactagttaccacagccacaaagtcattaaCCTCGCTTATTTATTTTCTTAACATCTGATtttaaatctaaccttaaccacactgctaaccttatgcctaacctttaAATTAAGACTAATAGCAAATGTTTGTATTCATTCATTTTTACAACATAGCCAATTTGACTTTGTTGCTGTGGTAACTAGTCTCTTTTATGGGGGCTCAATTGTTTTGCTCCAATGTCTCAGCCTGTCTTTCTCTGAACAGGTATTTTGTAGTGACAGGACTCTGTGGGCTCATACCGTTCTGAGGACAGCCCTTGCATTCCTTTCCTCACAGCAGATGTGGATTTTTACTGTAGATTCTCTTTGATATGAGTATGCAGCACTGTACATTGATTTGCATTGTTTTCCTCCTCTACTGgccgatttaaaaataaaaaatatacaccCACA

Function

NR:

description
ATP-dependent RNA helicase DDX18-like

GO: NA

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596934.2 True 2714 mRNA 0.51 14 43830961 43845629

Neighbor

gene id symbol gene type direction distance location
LOC110519984 LOC106586113 coding upstream 317074 43169785 ~ 43513887 (+)
LOC110519989 LOC106581699 coding upstream 747201 43051602 ~ 43083760 (+)
LOC110519992 LOC106586087 coding upstream 886364 42895618 ~ 42944597 (+)
LOC110519980 nckap5 coding upstream 947639 42746657 ~ 42883322 (+)
LOC110519990 stk17b coding upstream 1115133 42696546 ~ 42715828 (+)
LOC110519995 LOC106586118 coding downstream 11460 43857089 ~ 43875820 (+)
LOC110519997 lct coding downstream 30635 43876264 ~ 43895648 (+)
LOC118956122 NA coding downstream 97495 43943124 ~ 43986958 (+)
LOC110504116 LOC106586120 coding downstream 230193 44075822 ~ 44208107 (+)
LOC110520002 LOC106586124 coding downstream 624542 44470171 ~ 44475272 (+)
G261215 NA non-coding upstream 468 43830170 ~ 43830493 (+)
G261213 NA non-coding upstream 1554 43829183 ~ 43829407 (+)
G261212 NA non-coding upstream 1806 43828863 ~ 43829155 (+)
G261207 NA non-coding upstream 3305 43827208 ~ 43827656 (+)
G261206 NA non-coding upstream 4516 43826149 ~ 43826445 (+)
G261268 NA non-coding downstream 50211 43895840 ~ 43897118 (+)
G261269 NA non-coding downstream 51718 43897347 ~ 43897554 (+)
G261272 NA non-coding downstream 54038 43899667 ~ 43899875 (+)
G261274 NA non-coding downstream 55279 43900908 ~ 43901187 (+)
G261277 LOC105893191 non-coding downstream 58873 43904502 ~ 43904875 (+)
LOC110519969 LOC106586020 other upstream 3378781 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 4162873 39658753 ~ 39668297 (+)
G254816 NA other upstream 4986405 38843510 ~ 38844556 (+)
G254445 NA other upstream 5230095 38600487 ~ 38600866 (+)
G254204 NA other upstream 5389227 38441166 ~ 38441734 (+)
G261749 NA other downstream 406440 44252069 ~ 44252551 (+)
G262037 NA other downstream 674790 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 1993292 45838921 ~ 45839480 (+)
G263710 NA other downstream 2088490 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 2229855 46075484 ~ 46079425 (+)

Expression


Co-expression Network