LOC110519995 (LOC106586118)


Basic Information

Item Value
gene id LOC110519995
gene name LOC106586118
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43857089 ~ 43875820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596937.2
GGAACATTATGTATTGAGAAATTGCACTGCTGTCGTTTAGTTGCAAAGTAAACGGCTACTCGCACGGCTAAATCTGTTTCGGTGGCACTATGTATCAAAGTGTATCTGGAAAAACTCGAAGCTATGACTAAGATCTGAaagtctctctccccccaccccggAGGCACCATGAGCTGGAGTTTCCTGACGCGTCTCCTGGACGAGATCTCCAACCACTCTACCTTTGTGGGCAAGATCTGGCTCACACTGCTTATCGTCTTCCGCATTGTGTTGACTGCTGTGGGAGGCGAGTCCATCTACTACGATGAACAGAGCAAGTTTGTGTGCAATACCCACCAACCCGGTTGCGAGAATGTGTGCTACGACGCCTTTGCACCACTCTCGCACATCCGCTTCTGGGTGTTCCAGGTGATCATGATCACCACCCCCACTATTCTGTACCTGGGCTTCGCCATGCACAAAATCGCTCGCATGGACGACGATGAGTACAAGCCCCGCGGGAAGAGGATGCCGATGGTCAGCCTAGGGACCAACCGGAACTACGAGGAGGCGGAGGACAATGGCGAGGAGGACCCCATGATCTCCGAGGAGATCGAgttggagaagaaggagaagccTAGCAAGAAGCACGATGGACGCCGGCGCATCAAGCGCGACGGCCTCATGAAGGTGTACGTGTTCCAGCTGCTGTCACGGGCTGCTTTCGAGGTCTCCTTTCTGTTCGGCCAGTACATTCTCTACGGCCTGGAGGTGTCTCCCTCGTACGTGTGCATGCGCTCGCCCTGCCCACACACAGTGGACTGCTTCGTGTCGCGTCCCACGGAGAAAACCATCTTCCTGTTCATTATGTATGCGGTGAGTGCCCTCTGTCTGCTTTTCACTGTGCTGGAGATCCTCCACCTGGGTTATAGCGGCATACGGGACTGTTTCTGCCGCCCTCGTCCTCGCCCCCCAACCCCCCACCAACTGGCCAGCCAGCATCCCTCACAATGTGGCCGCCAGGTGCCCACAGCTCCTCCAGGCTACAACACAGTGCTGAAGAAGGACCCAAAAGGTATGCGATTGGATTACAACCTGGGCGACTCGGGCCGTGAGTCGTTTGGGGACGAGGCGTCGCAGCGGGAGCTGGAGAGGCTAAGGCGGCACCTAAAGCTGGCCCAGCAGCACCTGGACCTGGCCTACCAGAATGAGGACAACAGCAGCACTTCGAGGAGCAACAGCCCTGAGTCCAACGGGACGGCCGTGGAGCAGAACCGCCTCAACTTTGCCCAGGAGAAGCAAAGCAGCACCTGCGAGAAAGGTTTACGAGCATAACTTTGTCATTGGCCCACCTGGCCCTCTCAGGATAAATTCTTGCATCTGGGACAGTAGGGGTACCAGGGAGCATTGTGTGGGGACAGGTGTGTATGTGACTTGAGGAGGATGAATCCATCTTTCTTTCAGTGTTGAGTCCAGTGAACGTTCAAGGGAAACATGCCAAACTTAACGAGCAGCGCCTTCCTACCCAGCTATACTTGAGCACATCTGAAGATCCAAAGTGTCCACAAACTAGTTTTCAGAACATTCCTATTCGTCTCAGGGTAGCTGtgctgtttttttgggggggaatacTAGTGTTTCCTCTTGTTTGTAGTTTTTCCCTCTGCTGGAGTTTAGAGGTCAATCTTAAGTTTGCCTTCAACCTAAAACTGGAGTTTACATTTCAGCCATTCTAAGGTATGGGCAACCCAAGCGTGTCGCAAAAACATGTCAATGTGTAatttttttatgtgtgtgttttgtgaggaATAGGGAACCACGGTGAGTCGGTGTTTGGGGATGTTAACTGGTATGGTAATAGTTGTGTTAGAAGTGATATTATGGAGTGAATAACTGTCTTCCATGTGCAACAGCTTACAATGAGCAAATGGGTAACTATTTTGGGTCAACCACCAGAAACAACAGTTACATTTGAGTTGTAGCACAGCAATATGTAGTTTGCAGAAAGAGAACTAACCTGCTTTCATCATGAACCTCCCCCTTCCCATAAATCTGACTGTTGCCAAGTCTGGGAACTGGAAGCCTATTTTGGCACCTTTGTCcaaaggatttaaaaaaaaccTGGGTAATGCTTGAATTCATGTAAATTGTTATCTTGTCTGGTAATGTTAAACATGCTTTTGATACTGATTTCTTCCATTTTGTTAGTTTAACATGGAAAGTGTTTGGACGACATTGCAAGATTAAACCTTTAAGGTCAGGATGGCCAAATTGTAACTATGAAGTTTACTGTTGTCTTTTTGGGATTTCTACATTAACTGAGGGACTCAACAGATTGGGAGTTATTTTCCATATTGAGGACCATCCACGATTTGTGGGTAACGCATCTATGCCATACACCAGTTGAACTCTGGGTcttgttcagtagggcacaacATAGCAATGTTTTGAAAGGGAAAATGTAATTAATCTTTCTTATAGGATAAGGTCCTGTTTTGTGCCTACTGAACATGAACCAGAGACccaagatttaaaaaaatatatatacaaacaaCGCATTTACTCTGTCGAATAGCATTTTCAGAAAGTAATTCAAGACCCCCACAATTCAGGGTTATTTTTctatattgttttgttcagtgttttctCCTGAAATTAGGACATGTAGATTTGTGGCTCTGTGTTACTTCTCTATGCAATTCAAAATGTATGCTCGGTTCAGTGTTCATTATTGAGGCATTGATGCAAGTAACATTCAAAAGCCTTCAAGCTGTTAATAATGACCCCCATGCGGCAGTCTCGGTGACTGTTGTAAATGTTATCATTGTTATCTTTTTATGGTTGAAACGACCCAATGCCTTGAATGTGATCTTATGCCATCAGTGCACACATTATATCAGCAGTGCCATTAAGTGTCAACTGTCATCTCAAACAATTTGTTTAAATACTTTTGTATGAATAGTATTTTTGTGCTCAATTTCTTAAATAAACTTTTCCTAATAAA
>XM_021596935.2
AAGGTCCTGAATAGGGGGGTGGGGTGCGCACGGGGGGAGGTGGATTTGGGGATGTTCTTTGTGTGTCccgtataaaaaaaaaatgttgtaacCGCGACGGAGGAGAGACAGTCACATGCATATATCCAATCCCATGGTGTAACTAGTGAGACGTTTGTATTTTGtggtgagaaagagggaaaagtGTTTCGAACACAGGCTGAATTCAAAGAATTGAGAAACGCAGTCGGCTTCAAGATCTGAaagtctctctccccccaccccggAGGCACCATGAGCTGGAGTTTCCTGACGCGTCTCCTGGACGAGATCTCCAACCACTCTACCTTTGTGGGCAAGATCTGGCTCACACTGCTTATCGTCTTCCGCATTGTGTTGACTGCTGTGGGAGGCGAGTCCATCTACTACGATGAACAGAGCAAGTTTGTGTGCAATACCCACCAACCCGGTTGCGAGAATGTGTGCTACGACGCCTTTGCACCACTCTCGCACATCCGCTTCTGGGTGTTCCAGGTGATCATGATCACCACCCCCACTATTCTGTACCTGGGCTTCGCCATGCACAAAATCGCTCGCATGGACGACGATGAGTACAAGCCCCGCGGGAAGAGGATGCCGATGGTCAGCCTAGGGACCAACCGGAACTACGAGGAGGCGGAGGACAATGGCGAGGAGGACCCCATGATCTCCGAGGAGATCGAgttggagaagaaggagaagccTAGCAAGAAGCACGATGGACGCCGGCGCATCAAGCGCGACGGCCTCATGAAGGTGTACGTGTTCCAGCTGCTGTCACGGGCTGCTTTCGAGGTCTCCTTTCTGTTCGGCCAGTACATTCTCTACGGCCTGGAGGTGTCTCCCTCGTACGTGTGCATGCGCTCGCCCTGCCCACACACAGTGGACTGCTTCGTGTCGCGTCCCACGGAGAAAACCATCTTCCTGTTCATTATGTATGCGGTGAGTGCCCTCTGTCTGCTTTTCACTGTGCTGGAGATCCTCCACCTGGGTTATAGCGGCATACGGGACTGTTTCTGCCGCCCTCGTCCTCGCCCCCCAACCCCCCACCAACTGGCCAGCCAGCATCCCTCACAATGTGGCCGCCAGGTGCCCACAGCTCCTCCAGGCTACAACACAGTGCTGAAGAAGGACCCAAAAGGTATGCGATTGGATTACAACCTGGGCGACTCGGGCCGTGAGTCGTTTGGGGACGAGGCGTCGCAGCGGGAGCTGGAGAGGCTAAGGCGGCACCTAAAGCTGGCCCAGCAGCACCTGGACCTGGCCTACCAGAATGAGGACAACAGCAGCACTTCGAGGAGCAACAGCCCTGAGTCCAACGGGACGGCCGTGGAGCAGAACCGCCTCAACTTTGCCCAGGAGAAGCAAAGCAGCACCTGCGAGAAAGGTTTACGAGCATAACTTTGTCATTGGCCCACCTGGCCCTCTCAGGATAAATTCTTGCATCTGGGACAGTAGGGGTACCAGGGAGCATTGTGTGGGGACAGGTGTGTATGTGACTTGAGGAGGATGAATCCATCTTTCTTTCAGTGTTGAGTCCAGTGAACGTTCAAGGGAAACATGCCAAACTTAACGAGCAGCGCCTTCCTACCCAGCTATACTTGAGCACATCTGAAGATCCAAAGTGTCCACAAACTAGTTTTCAGAACATTCCTATTCGTCTCAGGGTAGCTGtgctgtttttttgggggggaatacTAGTGTTTCCTCTTGTTTGTAGTTTTTCCCTCTGCTGGAGTTTAGAGGTCAATCTTAAGTTTGCCTTCAACCTAAAACTGGAGTTTACATTTCAGCCATTCTAAGGTATGGGCAACCCAAGCGTGTCGCAAAAACATGTCAATGTGTAatttttttatgtgtgtgttttgtgaggaATAGGGAACCACGGTGAGTCGGTGTTTGGGGATGTTAACTGGTATGGTAATAGTTGTGTTAGAAGTGATATTATGGAGTGAATAACTGTCTTCCATGTGCAACAGCTTACAATGAGCAAATGGGTAACTATTTTGGGTCAACCACCAGAAACAACAGTTACATTTGAGTTGTAGCACAGCAATATGTAGTTTGCAGAAAGAGAACTAACCTGCTTTCATCATGAACCTCCCCCTTCCCATAAATCTGACTGTTGCCAAGTCTGGGAACTGGAAGCCTATTTTGGCACCTTTGTCcaaaggatttaaaaaaaaccTGGGTAATGCTTGAATTCATGTAAATTGTTATCTTGTCTGGTAATGTTAAACATGCTTTTGATACTGATTTCTTCCATTTTGTTAGTTTAACATGGAAAGTGTTTGGACGACATTGCAAGATTAAACCTTTAAGGTCAGGATGGCCAAATTGTAACTATGAAGTTTACTGTTGTCTTTTTGGGATTTCTACATTAACTGAGGGACTCAACAGATTGGGAGTTATTTTCCATATTGAGGACCATCCACGATTTGTGGGTAACGCATCTATGCCATACACCAGTTGAACTCTGGGTcttgttcagtagggcacaacATAGCAATGTTTTGAAAGGGAAAATGTAATTAATCTTTCTTATAGGATAAGGTCCTGTTTTGTGCCTACTGAACATGAACCAGAGACccaagatttaaaaaaatatatatacaaacaaCGCATTTACTCTGTCGAATAGCATTTTCAGAAAGTAATTCAAGACCCCCACAATTCAGGGTTATTTTTctatattgttttgttcagtgttttctCCTGAAATTAGGACATGTAGATTTGTGGCTCTGTGTTACTTCTCTATGCAATTCAAAATGTATGCTCGGTTCAGTGTTCATTATTGAGGCATTGATGCAAGTAACATTCAAAAGCCTTCAAGCTGTTAATAATGACCCCCATGCGGCAGTCTCGGTGACTGTTGTAAATGTTATCATTGTTATCTTTTTATGGTTGAAACGACCCAATGCCTTGAATGTGATCTTATGCCATCAGTGCACACATTATATCAGCAGTGCCATTAAGTGTCAACTGTCATCTCAAACAATTTGTTTAAATACTTTTGTATGAATAGTATTTTTGTGCTCAATTTCTTAAATAAACTTTTCCTAATAAA
>XM_021596936.2
TGCTCTAAGAAAACCAACGGTCAAAATCTCACGTCATAATACGTAAGAAATGTATTGGGGTTTTAACCCTTGTAGGATGGTCAAAATTAGGGAAACTAAATCAATGGAGGCAAGAAAAAGGTGGTCGAAAAATCTGGAAAATCGCGTCGCCTAGTCTGGATACTCTGCGAGAATTAAGGCTACACACAGGTTTGACCTACCATTGAACTCGTCACCTTTCAtatcaaataaaacaatatgAGATCTGAaagtctctctccccccaccccggAGGCACCATGAGCTGGAGTTTCCTGACGCGTCTCCTGGACGAGATCTCCAACCACTCTACCTTTGTGGGCAAGATCTGGCTCACACTGCTTATCGTCTTCCGCATTGTGTTGACTGCTGTGGGAGGCGAGTCCATCTACTACGATGAACAGAGCAAGTTTGTGTGCAATACCCACCAACCCGGTTGCGAGAATGTGTGCTACGACGCCTTTGCACCACTCTCGCACATCCGCTTCTGGGTGTTCCAGGTGATCATGATCACCACCCCCACTATTCTGTACCTGGGCTTCGCCATGCACAAAATCGCTCGCATGGACGACGATGAGTACAAGCCCCGCGGGAAGAGGATGCCGATGGTCAGCCTAGGGACCAACCGGAACTACGAGGAGGCGGAGGACAATGGCGAGGAGGACCCCATGATCTCCGAGGAGATCGAgttggagaagaaggagaagccTAGCAAGAAGCACGATGGACGCCGGCGCATCAAGCGCGACGGCCTCATGAAGGTGTACGTGTTCCAGCTGCTGTCACGGGCTGCTTTCGAGGTCTCCTTTCTGTTCGGCCAGTACATTCTCTACGGCCTGGAGGTGTCTCCCTCGTACGTGTGCATGCGCTCGCCCTGCCCACACACAGTGGACTGCTTCGTGTCGCGTCCCACGGAGAAAACCATCTTCCTGTTCATTATGTATGCGGTGAGTGCCCTCTGTCTGCTTTTCACTGTGCTGGAGATCCTCCACCTGGGTTATAGCGGCATACGGGACTGTTTCTGCCGCCCTCGTCCTCGCCCCCCAACCCCCCACCAACTGGCCAGCCAGCATCCCTCACAATGTGGCCGCCAGGTGCCCACAGCTCCTCCAGGCTACAACACAGTGCTGAAGAAGGACCCAAAAGGTATGCGATTGGATTACAACCTGGGCGACTCGGGCCGTGAGTCGTTTGGGGACGAGGCGTCGCAGCGGGAGCTGGAGAGGCTAAGGCGGCACCTAAAGCTGGCCCAGCAGCACCTGGACCTGGCCTACCAGAATGAGGACAACAGCAGCACTTCGAGGAGCAACAGCCCTGAGTCCAACGGGACGGCCGTGGAGCAGAACCGCCTCAACTTTGCCCAGGAGAAGCAAAGCAGCACCTGCGAGAAAGGTTTACGAGCATAACTTTGTCATTGGCCCACCTGGCCCTCTCAGGATAAATTCTTGCATCTGGGACAGTAGGGGTACCAGGGAGCATTGTGTGGGGACAGGTGTGTATGTGACTTGAGGAGGATGAATCCATCTTTCTTTCAGTGTTGAGTCCAGTGAACGTTCAAGGGAAACATGCCAAACTTAACGAGCAGCGCCTTCCTACCCAGCTATACTTGAGCACATCTGAAGATCCAAAGTGTCCACAAACTAGTTTTCAGAACATTCCTATTCGTCTCAGGGTAGCTGtgctgtttttttgggggggaatacTAGTGTTTCCTCTTGTTTGTAGTTTTTCCCTCTGCTGGAGTTTAGAGGTCAATCTTAAGTTTGCCTTCAACCTAAAACTGGAGTTTACATTTCAGCCATTCTAAGGTATGGGCAACCCAAGCGTGTCGCAAAAACATGTCAATGTGTAatttttttatgtgtgtgttttgtgaggaATAGGGAACCACGGTGAGTCGGTGTTTGGGGATGTTAACTGGTATGGTAATAGTTGTGTTAGAAGTGATATTATGGAGTGAATAACTGTCTTCCATGTGCAACAGCTTACAATGAGCAAATGGGTAACTATTTTGGGTCAACCACCAGAAACAACAGTTACATTTGAGTTGTAGCACAGCAATATGTAGTTTGCAGAAAGAGAACTAACCTGCTTTCATCATGAACCTCCCCCTTCCCATAAATCTGACTGTTGCCAAGTCTGGGAACTGGAAGCCTATTTTGGCACCTTTGTCcaaaggatttaaaaaaaaccTGGGTAATGCTTGAATTCATGTAAATTGTTATCTTGTCTGGTAATGTTAAACATGCTTTTGATACTGATTTCTTCCATTTTGTTAGTTTAACATGGAAAGTGTTTGGACGACATTGCAAGATTAAACCTTTAAGGTCAGGATGGCCAAATTGTAACTATGAAGTTTACTGTTGTCTTTTTGGGATTTCTACATTAACTGAGGGACTCAACAGATTGGGAGTTATTTTCCATATTGAGGACCATCCACGATTTGTGGGTAACGCATCTATGCCATACACCAGTTGAACTCTGGGTcttgttcagtagggcacaacATAGCAATGTTTTGAAAGGGAAAATGTAATTAATCTTTCTTATAGGATAAGGTCCTGTTTTGTGCCTACTGAACATGAACCAGAGACccaagatttaaaaaaatatatatacaaacaaCGCATTTACTCTGTCGAATAGCATTTTCAGAAAGTAATTCAAGACCCCCACAATTCAGGGTTATTTTTctatattgttttgttcagtgttttctCCTGAAATTAGGACATGTAGATTTGTGGCTCTGTGTTACTTCTCTATGCAATTCAAAATGTATGCTCGGTTCAGTGTTCATTATTGAGGCATTGATGCAAGTAACATTCAAAAGCCTTCAAGCTGTTAATAATGACCCCCATGCGGCAGTCTCGGTGACTGTTGTAAATGTTATCATTGTTATCTTTTTATGGTTGAAACGACCCAATGCCTTGAATGTGATCTTATGCCATCAGTGCACACATTATATCAGCAGTGCCATTAAGTGTCAACTGTCATCTCAAACAATTTGTTTAAATACTTTTGTATGAATAGTATTTTTGTGCTCAATTTCTTAAATAAACTTTTCCTAATAAA

Function

NR:

description
gap junction gamma-1 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596937.2 False 2983 mRNA 0.47 3 43857089 43875820
XM_021596935.2 False 3088 mRNA 0.47 3 43857270 43875820
XM_021596936.2 True 3093 mRNA 0.46 3 43858067 43875820

Neighbor

gene id symbol gene type direction distance location
LOC110519994 LOC100380648 coding upstream 11460 43830961 ~ 43845629 (+)
LOC110519984 LOC106586113 coding upstream 343202 43169785 ~ 43513887 (+)
LOC110519989 LOC106581699 coding upstream 773329 43051602 ~ 43083760 (+)
LOC110519992 LOC106586087 coding upstream 912492 42895618 ~ 42944597 (+)
LOC110519980 nckap5 coding upstream 973767 42746657 ~ 42883322 (+)
LOC110519997 lct coding downstream 444 43876264 ~ 43895648 (+)
LOC118956122 NA coding downstream 67304 43943124 ~ 43986958 (+)
LOC110504116 LOC106586120 coding downstream 200002 44075822 ~ 44208107 (+)
LOC110520002 LOC106586124 coding downstream 594351 44470171 ~ 44475272 (+)
LOC118964364 NA coding downstream 958691 44834511 ~ 44834565 (+)
G261217 NA non-coding upstream 13513 43840940 ~ 43843576 (+)
G261215 NA non-coding upstream 26596 43830170 ~ 43830493 (+)
G261213 NA non-coding upstream 27682 43829183 ~ 43829407 (+)
G261212 NA non-coding upstream 27934 43828863 ~ 43829155 (+)
G261207 NA non-coding upstream 29433 43827208 ~ 43827656 (+)
G261268 NA non-coding downstream 20020 43895840 ~ 43897118 (+)
G261269 NA non-coding downstream 21527 43897347 ~ 43897554 (+)
G261272 NA non-coding downstream 23847 43899667 ~ 43899875 (+)
G261274 NA non-coding downstream 25088 43900908 ~ 43901187 (+)
G261277 LOC105893191 non-coding downstream 28682 43904502 ~ 43904875 (+)
LOC110519969 LOC106586020 other upstream 3404909 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 4189001 39658753 ~ 39668297 (+)
G254816 NA other upstream 5012533 38843510 ~ 38844556 (+)
G254445 NA other upstream 5256223 38600487 ~ 38600866 (+)
G254204 NA other upstream 5415355 38441166 ~ 38441734 (+)
G261749 NA other downstream 376249 44252069 ~ 44252551 (+)
G262037 NA other downstream 644599 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 1963101 45838921 ~ 45839480 (+)
G263710 NA other downstream 2058299 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 2199664 46075484 ~ 46079425 (+)

Expression


Co-expression Network