LOC110519997 (lct)


Basic Information

Item Value
gene id LOC110519997
gene name lct
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 43876264 ~ 43895648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596938.2
TTCAATACAGTAAACAGCATTGCTATAAAAGGCTTACTGTGCAGTTCACCTTCCACCACCAAGATGAAGAACCTGGTGCGGGTTCTCTATCTGTACCTGATGTGCCTCTATAGCTGTCTGTGTCAGGAAGATGACCCACAGGACTTTATGCTTCTAGCAGGCCCTCTCACCAACCACTTGAGGATGGACTTGAGCACCAAACCCATTGATGCCTTTGACTGCAGTCATCCCCTTCCCTTGGGCTCCAGGGCCTACTTCCAGTATCTCCAGAGTCGGGGAGTAACTCATTTCAAAGTTCCCCTGTCCTGGGCTCAACTTTTGCCCACAGGTGACCCCAGCCAGCCCAGTCAGCCTGCATTGTCTTGCTACCGGAACTTCTTGGAACAGCTAGTGGAAGTAGGCCTCAAACCACTTGTTGTCTTGCATCGCTCTGCTTTACCAGAGGCCCTGAGATCCAGGTATGGGGGCTGGGAAAGCGCAGAGCTGCTAGATGTATTTCAGCAATATGCTGAATTTGTTTTTCTGGCGTATGGAGAACTGGCACACTCTTGGGTGACACTGAGCCACATCGAAGAGCTGCGGGATGAGGTGAATCTGCAGCTGAAACACGCTCTCCATGCCCACGCCGACGTGTACCACCTCTACCATCACCTGTTTCCTGGACAAGGCGGCCATGTGTCGATTGGCGTAAGGGCCAGTGATGTTTCCATCCTTTACCAAAGCGAGGCTGCCATTAAGGAGTCCCTAGATTTCCTGTCAGTGCAAATTGAGTACAACTGCACCTCTAAATCAAACCTGGCAGAGGAGCTGAGAAGATTACAGAAGGCCAATGGTCAGATACCCATTGTGATTTACAAGATGAATATCAAAGGCTGTTCCTTCAGTCAATTCCAGCCACTCGGTAACATCCTGCAAGTTCTGCGAAATGGGGACCTGCAAATTCTGGGATGTGACATGGTTGACTTGTTTGAGGAGCTGGATTTGGTGGACACTCTGAATAGTCTTTCAGATCACACTGGGGATGCACTGTCAGTAAACTACCAGAGAGTGTGGGATAAGTTTGGAACTCAGACCATTTCTGAGCGGGACATCTTCCTGAATGAGTCTTTTCCTGATGGCTTCCAGTGGGCCACTTCCAGTGAGTCCTTTAAAGTCGAGGGTGGCTGGTCTGAGCATGGGAAGGGTGAGACCATTTGGGACCGCTTTGGCCATGAGCACCAAGTCTTTGAGAATCAGACTGCAGACCTGGCTTGTGACAGTTACCATAAAGTCGACTATGACGTCTATCTTCTGAGAGGTCTACTTGTCAAAACCTACCAGTTCTCTATCTCCTGGGCCCGCGTTTTCCCCTCTGGCCACTGGGGGAGCCACTCTGAGAAAGGTGCGCTTTACTATGACAGCCTGATCAATGCGCTGATAGAGGCGGGTATAGAACCTGCTGTGACCCTGCACCACTGGGATCTTCCCCAGGCACTCCAGGACTATGGAGGCTGGACCAATGTTTCCATTGCAGAAGCCTTTAAAGACTATGCCGACTTCTGCTTCTTCAGGTTTGGAGATAGGGTTAGGACCTGGAACACTTTCAGTAGCCCCTGGGTGATTAGCCATGCTGGGTACGGTACCGGTCAGCATCCCCCTGGAATAAAGAACTATGTGGTTGCCTCCTACCAGgtgACTCACAACATGCTCAAGTCCCACGCTGAAGCATGGCATGTTTACAACGACAAGTACCGGAAGGACCAGGGAGGCAAAGTAGGCATTGCCCTGGACTCCAACTGGGCTGAGCCTCCAAGCTCCTCTTCCAAGCCTGAAGATGTAGTGGCTGCAGACCGCTACCTGCAGTTCATGCTGGGATGGTTCGCCCATCCCATTTTTGTGGATGGGGACTATCCACCCTTGCTAAAGTCTCAGATTGAGCAGAAAAGGCGGAATTGTTCCCTCTCTGTGCCTGCCATACTCCCGTTCTTCACTGCAGCAGAGAGTAAGCGAATTCGCGGAACGGCAGATTTCCTGGGGCTCAACCACTACACCTCTCGCCTGGTCAATGCCAGTGATGGTGGCTGCGTGCCTGGACCAGAGGGGGTGGGAGACTTCAAAGCTCATGTGGACCATGCCTGGCCTTCTACGGAGTCTGACTCGATACACTCTGCACCCTGGGGCCTCCGTAGGCTGCTCAACTATGTTTCTGCAGAGTATCTGAATGTCACTAAGGTGCCCGTCTACATAACTGGAAATGGAATGCCCACGGGGTACAGCGGGGACGCTATCAATGACACGGAGCGTACAGAGTACTTAAAGGGCTACATCAACGAAGCACTGAAAGCAATCCATCTGGATGGAGTGGACGTGCAGCGTTTCACTGTGCAGTCACTGATGGATGGGTTCGAGGGGCCAAAGGGCTACAGCCAAAGGTTTGGTTTGCACTATGTCAACTTTGAAGACCCTAACAGGCCCAGAACCCCAAAGCAGTCAGCCTATTTCTACTCTGATATTATCAAGAGAAATGGGTTTTCTGATACAAGAGAAAGAAGTCCACAACAAGAACCAAAGTTTCAAACCGTTGTGCGGCAACCCACTCTGCCCCCGTCCGAGGTTCCCTCCAGATCCAAGGTTGTCTGGGAGAAGTTCTCCAGTCAGTCCAATTTCCAGAGGAAGCTCTACCACTACGGCACCTTTCCAAAGGGCTTCCAATGGGGAGTGACGTCCTCAGCCTATCAAATAGAAGGTGGCTGGAATGTTGACGGAAAGGGTGCAAGTGTATGGGATACCTTCACCCACAAGCCTGGCAGTACTACCGAAGATGCCAATGGTGACATAGCCTGTGACAGTTACCACCGACTAGAGGAAGACCTGTACATGATAAGGGCCCTAAGGGTTAAGACCTACCGATTCTCCCTGTCCTGGTCCAGGATCTTTCCCGATGGTCGGCGCAATTCCTTGAACCAGAAGGGTGTTAACTACTACAACAGGCTCATTAACGGCCTACTAGCTTATAACATAACCCCCATGGTGACACTCTACCACTGGGACCTCCCTCAGGCCCTGCAGGACCTTGATGGCTGGGACAACATCCAGATGGTTGAGATCTTTAACGACTTCTGTGACTTCTGCTTTTCCACCTTTGGGGAGCGAGTAAAGTTTTGGTTGACCTTCAACCAACCCTATACAATTGCCTGGTCAGGATATGGTCTGGGGCAGATCCCACCAAATGTCAGGAAGCCTGGGGATGCACCATATAGAGTCGCTCATAACCTTCTAAAGGCACATGCCACGGTGTACCACAACTATGACAAGAAATACCGCAAATCCCAAGGCGGTCTGGTCTCCATCGCCCTCAACGCAGACTGGGCTGAGCCCAAAGATGTCAACAACCCCCGGGAAGTCATGGCAGCAGACCGTGCCCTGCAGTTTCAGCTTGGCTGGTTCGCTCACCCAATCTTCAAAACTGGTGATTACCCCGACGCCATGAAGTGGCAGGTGGGCAACAAGAGTGAGCTCCAAGGCCTGCCAGGTTCCAGGCTCTCCACGTTAACCAATGATGATAAGGCCTACATCAGAGGTACTGCTGATGTCTTCTGTCTAAATGCTTATACCACTAAGGTGATACGTCAAGTAACTGCCAGGCTTAGTCCTCAGTCCTATTATAACGACCAGGacattggagaggaggaggagggtgattCCCCCACAACTGCCATCAAAGGGCAGAGGGCTGTAGCATGGGGCTTACGGAGACTCCTCAACTGGATCAAGGAGGAGTACGGAGATCCAGAGATTTATGTCACAGAGAATGGAGTTCCAACGGCTTCAAAGACCACAGTGGATGACACTGACAGAATATTCTACTACAAAACCTACATTGACGAGGCTTTGAAAGCCCATGACCTGGATGGTGTGAAGGTGAGGGGTTACAGTGTCTCGTCTCTTATGGACTCTTTTGAGTGGCTCAATGGGTACACAGTGGGCTTTGGTCTCCACCATGTGGACTTTACTCACCCAAGCCGACCCAGGACGCCCAAACGTTCAGCACACTACTACTATCAAGTCGTGAGGGACAACGGTTTCCCTCAATCGGAGGATGGTACACCCATTTATGGAAACTTCCGTAAAGATTTCATCTGGAGCACAGCAACAGCATCTTACCAGATTGAGGGGGGCTGGAGAGCAGATGGAAAGGGCCTCAGTATCTGGGATAAGTTTGCTCACACTCCTCTTAGAGTGTTCAATGATGACACAGGAGATATTGCCTGTGATAGTTATCATaaggtggaggaggatgtggcTATGCTGAGGAGGCTGAAGGTGACCCACTACCGCTTCTCTATATCCTGGTCCAGGGTGCTCCCCGATGGCACCACCAAAAACATCAACGAGGCTGGCCTCAACTACTACCGTAGACTGGTTGACGCACTTCTCATTGCCAACATACAGCCTCATATTACCCTCTACCACTGGGACCTCCCTCAGGCTCTGCAGGATGTGGGGGGCTGGGAGAACGACAGCATCATTGACCGATTCAGAGAATATGCTGATTTTATCTTCACTCACCTTGGAGACAAAGTGAAGTTCTGGATCACCATCAATGAGCCTTACAATATTGCCAATATTGGCCACGGCTATGGAGCTGCCGCCCCAGGCATCAGCTTCAGACCTGGCACATTGCCCTACATAGTGGGCCACAACCTCATCAAAGCCCATGCCGAAGCCTGGCACCTGTACAACGATAACTACCGCACCAAGCAGGGAGGCATTATCTCCATCACCATCAACTCAGACTGGTCAGAGCCACGGAACCCCTACAAGCAGGAGGACGTAGAAGCTGCACGACGCGTTGTTCAGTTCTATATCGGCTGGTTTGCCCACCCTATATTCAATGGAGACTACAGTGATACAATGAAGACAATCATTCGAGAGAGGAGCCTAGCAGCAGGCCTATCTAAATCACGGCTTCCTGAGTTTTCCCCTGCAGAGATCCAGAGGGTCAAAGGTACATATGATTACTTTGggttcaaccactacacaactgTCCTGGCATTCCCTGTTGAGTATGGGAACCTACAGCATTACGATGCAGACAGGGGCGCTGGAACGATTGCTGATCGCACCTGGCTGGACTCTGGCTCTGGCTGGCTGAAGGTTTCCCCATTTGGATTCCGCAAGATCCTCAACTTCATCAAGGAGGAGTACGGCGACCCACCCATCATCATCACAGAGAATGGGATATCGGCACGAGGGCCAGTGGATCTGAACGATGTCCACAGGATTCACTACTATGAGAATTACATCAATCAGGTCCTCAAAGCATATTTGCTGGATGGGGTGGATATTCGAGGCTACACAGCCTGGTCTCTGATGGACAATCTAGAGTGGGCCACTGGCTTCTCAGAGAGATTCGGCCTGTTCTATGTGAACCGTTCTGACTCCAAACTTACACGAGTAGCCAAGAACTCTGTTGCCCGCTATGCCACCATCATCACCTGCAATGGATTCCCTGACCCCACTCTGGGGCCTCACGAGTGTTTGAATCCCGATCCCGAAGGAACGAGTGCACCCTCCACCACCTCGCCTATCTTATCAGTCGAGAACGTGAGCTTCCTCGGTATGGAGCTGTCATCGGGCAGTGCTGAGATAGCCCTCTACAGCGTCTTTGCTCTCTCCGTTACGGGTGTCCTCTCAGTCATCGCTGTAACCTATCTGTACCGGAAGTCAGACAGATCCTCTGTGGAATCTGTGAGGATGGAGGCACTCTGAACACATAAAGAGTGCGAGAAGGCTCTGCCCCATCCAACATAAATCTCTCATTGTCTCTGTTTTTTAAATAATCTGTCAATACTCTACCTGAAAAGTGCCTGTCTATTTGTGGTATAGGAAAATTTGTTGTAGCTTATATATCTGATGAATCATTAGTGTCTGCACCAAACGTTGCCTTCGCTTGTTATTTTAAGAAATAAAGGACTAACTTTTGAA

Function

symbol description
lct Predicted to enable hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital lactase deficiency. Orthologous to human LCT (lactase).

NR:

description
lactase-phlorizin hydrolase

GO: NA

KEGG:

id description
K01229 LCT; lactase-phlorizin hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596938.2 True 5967 mRNA 0.51 17 43876264 43895648

Neighbor

gene id symbol gene type direction distance location
LOC110519995 LOC106586118 coding upstream 444 43857089 ~ 43875820 (+)
LOC110519994 LOC100380648 coding upstream 30635 43830961 ~ 43845629 (+)
LOC110519984 LOC106586113 coding upstream 362377 43169785 ~ 43513887 (+)
LOC110519989 LOC106581699 coding upstream 792504 43051602 ~ 43083760 (+)
LOC110519992 LOC106586087 coding upstream 931667 42895618 ~ 42944597 (+)
LOC118956122 NA coding downstream 47476 43943124 ~ 43986958 (+)
LOC110504116 LOC106586120 coding downstream 180174 44075822 ~ 44208107 (+)
LOC110520002 LOC106586124 coding downstream 574523 44470171 ~ 44475272 (+)
LOC118964364 NA coding downstream 938863 44834511 ~ 44834565 (+)
cd18 cd18 coding downstream 983012 44878660 ~ 44903676 (+)
G261217 NA non-coding upstream 32688 43840940 ~ 43843576 (+)
G261215 NA non-coding upstream 45771 43830170 ~ 43830493 (+)
G261213 NA non-coding upstream 46857 43829183 ~ 43829407 (+)
G261212 NA non-coding upstream 47109 43828863 ~ 43829155 (+)
G261207 NA non-coding upstream 48608 43827208 ~ 43827656 (+)
G261268 NA non-coding downstream 192 43895840 ~ 43897118 (+)
G261269 NA non-coding downstream 1699 43897347 ~ 43897554 (+)
G261272 NA non-coding downstream 4019 43899667 ~ 43899875 (+)
G261274 NA non-coding downstream 5260 43900908 ~ 43901187 (+)
G261277 LOC105893191 non-coding downstream 8854 43904502 ~ 43904875 (+)
LOC110519969 LOC106586020 other upstream 3424084 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 4208176 39658753 ~ 39668297 (+)
G254816 NA other upstream 5031708 38843510 ~ 38844556 (+)
G254445 NA other upstream 5275398 38600487 ~ 38600866 (+)
G254204 NA other upstream 5434530 38441166 ~ 38441734 (+)
G261749 NA other downstream 356421 44252069 ~ 44252551 (+)
G262037 NA other downstream 624771 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 1943273 45838921 ~ 45839480 (+)
G263710 NA other downstream 2038471 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 2179836 46075484 ~ 46079425 (+)

Expression


Co-expression Network