LOC110519998 (LOC106586121)


Basic Information

Item Value
gene id LOC110519998
gene name LOC106586121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44231999 ~ 44235888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596939.2
GGATAAAGTTTTCCCCAAAAAATTGGGGAAAAACTTCCTGCGAGAGAAGGACTACCTCAAGCGTAGGTTTGAAAGTATCCTACTCCCAAAACGTTTAGAACATAATAGTCGTAGAGTAAGACATTCTTTAAAACCACTTTCTGTCGGTGTCTGCATATTCTGATATATTTTGTAACCACAGCTTCAAAAGTGGAGACCGTTTTTTCTTTGCTATCCTTGCATTTCTTTAAACGAGAAATGGAAGAGGGCTCAAGTTCTCCCGTCTCCCCAATGGATAGCCTACTGACCAGTGAGGATGAGTTGGACAGGCAACAGAAAAGATTTGGAAGGAAGAGGAGACACAGTAAAAAGTCGAGCGAGGACAGCTGTCCGGGTAACGTGAAACGGGGCAAAAAACCGAGTCCGAGCAGCAGCACTCAGTCCTACGAGGAGTTGCAGAACCAGCGGTGCCTGGCCAACGTCAGGGAGAGGCAAAGGACACAGTCGCTCAACGAAGCCTTCTCGTCTTTACGCAAAATCATCCCCACGCTACCCTCGGATAAACTGAGCAAGATCCAGACACTAAAACTGGCCTCCAGATACATAGACTTCCTCTATCAGGTGCTGCAAAGCGACGAGATGGACAACAAGATGTCGAGCTGCAGCTATGTTGCGCACGAGAGACTCAGTTACGCTTTCTCCGTGTGGCGGATGGAGGGCGCGTGGTCAATGTCTGCATCTCATTAGCATCCAAAGCCCTTCACTCAATGCCAAAGCGACTGTTTACTTCTACAAAGTATGAAGACACCAAAGGATCTATTGAAGAACCCACGAACCTCAGAAACGTGGTCAAGAGGCATAATGTGGTGCACAACTCTCCTGGAGTGCTTTGAGTGCAATTACCTAACACTTGGAAGAGTGTGAGAAGGAGTGAAGATAACCCGAAAAGTTGCATACTCAGACAGTGTTGTAAGACGCTTCTCGTGTCTACTGCTGGCGCATTATAATGTTGTTTTAATGTCGGAATGGTGATGGGAGTAGGAAAAACCATCTTTTATCTTTTTGGGGAAATTATATTTCGTTCTGTTTGTAAAATCTCAAAATAGAAGTATATATAAATGTTTCGTATTGTACATAGGCCTACCTGTATGTATATTCAGCTTGTAAAGGGACCAATGCAATTTAGAATACGTTCTTGAAGTACGCTGCATGGATTTATCCAGATTTGACTTATAAGCAAGTCTTTCAACTCTGTCcaatgtacatttaaaaaaaaacttatttattaaaacacatatttTTGAACAATG

Function

NR:

description
twist-related protein 2-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596939.2 True 1289 mRNA 0.43 2 44231999 44235888

Neighbor

gene id symbol gene type direction distance location
LOC118956029 NA coding downstream 490197 43706881 ~ 43741802 (-)
LOC110519993 LOC106586116 coding downstream 605829 43521331 ~ 43626170 (-)
LOC110519985 LOC106586111 coding downstream 1180585 43015700 ~ 43051414 (-)
LOC110519987 LOC106586109 coding downstream 1227942 42946744 ~ 43004057 (-)
LOC118955837 NA coding downstream 1614823 42592366 ~ 42617176 (-)
LOC118956139 NA coding upstream 23281 44259169 ~ 44262998 (-)
LOC110519999 LOC106586089 coding upstream 54938 44290826 ~ 44294051 (-)
LOC110520000 NA coding upstream 189480 44425368 ~ 44468711 (-)
LOC110520004 LOC106586125 coding upstream 287822 44523710 ~ 44718478 (-)
LOC118956426 NA coding upstream 702847 44938735 ~ 44940312 (-)
G261711 NA non-coding downstream 14684 44201848 ~ 44217315 (-)
G261710 NA non-coding downstream 23928 44205471 ~ 44208071 (-)
G261680 NA non-coding downstream 84726 44147036 ~ 44147273 (-)
G261678 NA non-coding downstream 85986 44145775 ~ 44146013 (-)
G261649 NA non-coding downstream 132949 44098455 ~ 44099050 (-)
G261779 NA non-coding upstream 530 44236418 ~ 44236621 (-)
G261781 NA non-coding upstream 3449 44239337 ~ 44239566 (-)
G261792 NA non-coding upstream 16278 44252166 ~ 44252426 (-)
G261861 NA non-coding upstream 82667 44318555 ~ 44318760 (-)
G261863 NA non-coding upstream 83054 44318942 ~ 44319180 (-)
G261580 NA other downstream 200494 43989524 ~ 44031505 (-)
G259576 LOC106599288 other downstream 1904004 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 1912614 42290259 ~ 42319385 (-)
col6a3 LOC106598405 other downstream 1916641 42291728 ~ 42329627 (-)
G259259 sdpr other downstream 2464411 41763817 ~ 41767588 (-)
G262993 NA other upstream 774284 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 863452 45099333 ~ 45104286 (-)
G263274 NA other upstream 1300444 45536332 ~ 45537542 (-)
G265988 NA other upstream 3363330 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 3796159 48032036 ~ 48033434 (-)

Expression


Co-expression Network