cd18 (cd18)


Basic Information

Item Value
gene id cd18
gene name cd18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44878660 ~ 44903676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124435.1
CGTAGGAGCTGCAGCACCTTGACCTTTGGAATGTAtaagtgtgtgtctctcctactcCTGCTGATGGGCAGAGGAGTTCTCTCCCAGGAAGTGGAAGTATGTTCCAAAACGGTGATCAACTCCTGCAGGGACTGCATCAGATCAGGAGCGTACTGCACGTGGTGTAAACAACTGAACTTCACCAAGCCAGGTGAGCAAGAAGCAGCTCGCTGTGACACCCGGGCTCAGCTAGAAGAGAGGGGCTGCATGGGAAAAGACATTGTATCCCCCCTGAATATCCTTACTGTGACTAAGAACACCGCCCTGTCCACAAATGCATTTGTCAAGGACGAACCCATCCAGCTGCGTCCTCAGGAGGTCAATCTGAAGCTCAGACCAGGGCTGCCTCGGACGTTCAAGCTGGACTTTCGGAGAGTGGAGGGCTATCCTGTTGATCTCTACTACCTGATGGATCTCTCCTACTCCATGGAGGACGATCTGAGGAGCATCAAGACTCTGGGAAACGAGCTCTTTAAAGCTCTGCAAGGAATCACAAAACAAGGGCGAATAGGCTTCGGCTCTTTCGTAGACAAGACTGTCCTGCCTTTCACTAACACCAACCCAGAGAAGCTGAAGAAGCCATGCGAAGAAAAGGAGCTGTTCTGTCAACCTGCCTTTGGCTACAGGCATGTTCTTAGCATGACAGAGAACAAAGCTGACTTTAATAGGGAGGTAGACAAGCAGCGTATCTCTGGGAACTTGGACTCCCCTGAAGGGACGCTGGACGCCATCATGCAGGCTGCAGTATGTGGGGACAGGATTGGCTGGAGGAATAGCAGCACTCGGCTAATCGTCCTGACCACCGACGATGGCTTCCACATGGCAGGGGATGGCAAGCTGGCTGGCATACTGGAGCCCAACGACGAGAGATGTTACATGGACAACAAGCTGTACACTAAGAGCAATGACATGGACTACCCATCTGTTGGTCAAGTGGCTTCGCAGTTAGAGAAGAACAACATTCAGCCAATCTTTGCTGTGACAAAGAACATGGAGAATGTATACAGGGAACTCAGTAGAATGATCCCCAAGTCTGAGGTGGGAGTATTGTCAGAGGACTCCAAAAATGTTGTTGAATTGATCCAAGCTGCCTACAATAGGCTCTCCTCCAAAGTGACAGTGACTCATGATGCTCTCCCTGACAATGTGAGAGTCACTTACACTCCACTCTGTCCTAGGGGGACCCGCAGGGACAAGGGGGTCTGTGATAACGTCAAAGTAGGAGACTTGGTGTCTTTCAACGTAACAGTGACGGCAGATGAATGTATAGACAGGGAGAGGTCTTTTCTGATTGGCCCATTGGGCATAAAAGACAAGCTGAAGGTGAGCTTGTCGACTCGCTGCGAGTGTGAATGTGATGACCCCAAGGAGGAGAATCACAAGGACTGCGACGGGAAGGGTAAAGTCAAATGTGGCATGTGCAGTTGCAATGCCGGCTTCGTGGGTCAGAAGTGCGAGTGCGCCATCGGGGAGAAGGACGAGAGCTCTCTGAGGGCGGCATGCCGGAAGGACAACGGCACGGAGTGCGAAGGACgaggggactgtgtgtgtggcatttgcCAGTGCTATGCCCAACAAGGCGGCAGCACCTACTACGGCACGCACTGCGAGTGTGAAAACGAGAGCTGCGAGAAGTTTCAGAACAAACTGTGTGGAGgGAACGGGAAATGCCGTTGTAAAATTTGCGAATGCAACCCCGAGTACGAAGGCACCGCCTGCCAATGCAAGAAGTCGGATGAGCAGTGTCGCACACCAAGCGGGAGCGTGTGCAGCGGCAGGGGCACATGCCAGTGTAACCAGTGCAAGTGTATCGAGGGCTACCAGCGGCCCTACTGTCTGACCTGTCCCGCCTGCCAGACTCCCTGTATAACCAAGGGGAAGTGCATCGAGTGTCTGGGCTTTCAGACAGGCCCGTTCAGCAAGAACTGCTCCCAGACCTGTAAGAGTATTAATGAATTTGAGATGGTGGAGACATTGCCACCTGGTAAGCCTTGTGACGTGAGGGATGTGGAGAACTGCCGGGTGTTCTTTATCATTAAACAGTTGGATGGAGAGGACAACTACTCCGCCCAGATACTAAAGACCAGAGAATGTCCGGAGTTGCCAAACATCTACGCCATCATTGGAGGCTCCATTGCGGGCGTGGCCCTGATCGGCTTACTGATCCTGCTCATCATCAAAGCCATCCTCTACATGAGAGACGTGAAGGAGTTCCGCAGGTTTGAGAATGAGCAGAAGAAAGGAAAGTGGTCCCCGGGAGACAATCCACTATTCATGAACGCGACCACCACCGTGGCTAACCCTACCTTCACTGGAGAATAAGATCAACATCAGTCAGCCCAGACAATCAAGTTGGATTCAAATACATGTACAtttattgtttctgttttaatgtgcttttttttctccacaatttatAAGTTGGTTTACAAATAGTATTTTTTTATGTGTTCCAAGACTGAATTCAAGAATGATCATGCACTGATTGGAAAAAAACTGCTGCAATGTTGCTACAGGGTCCTTCCACCTAAAAAAAGACCAAGTAAGAGGTTTTTGACACCCACCGTCTCAGATTATTCTGAAATGGTTTCTGTTAACgttagcattcctgcaacattattttgttggaACAatatttgatctctgagaaattaagctaatttaTTGCACggaaattggccattttaatttataggattcatataatattcaacaATTATAGTACCTAATatccgatttggaccaaacttttGATAACAATGggtaagacatgaggaatcaaAAGAAGTGGTCAAAAGCCATCCACGGACCCCCCCCTATTAATTAATTTTGTTCCTTCAACCAATGtaatgtattctcagtgaattGAGTGAGGTTTTTTTCCCCTGTTCAGAGGAATTAGTCATTGAAGTTGTTGGGTCCTACATCCTGACCACTAAATGGTGCTGTTCCTGCTATTTGGGGATAATTTATTAAAGATtttcttaccctgtaagcagtttaCGGACCAGGTATGACAGCAACCCATtatttggttttgtttaccttgccactgtttcaaatgctaactttttagcatttgtgtcacaaatccaatgcaagttAATGGTACCTATATTAGGATAATTCACGCTTTATATCCAAATCATCCTAAAGTttcaaataatgtattgtgtaactcaATGATATTTCTTACAGCAATTATTTTTGTAGCTTTTATTTACAAATCTACAATGTACCATGACTCTACATATCCTATGAGGAAATATTGTGTAAAGCAGCAAACGATCACTGATATTTTTCATTACAAATAAAACTCTCTCTTGATTT

Function

symbol description
cd18 integrin beta 2

NR:

description
CD18 protein precursor

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06464 ITGB2, CD18; integrin beta 2

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124435.1 True 3369 mRNA 0.47 18 44878660 44903676

Neighbor

gene id symbol gene type direction distance location
LOC118964364 NA coding upstream 44095 44834511 ~ 44834565 (+)
LOC110520002 LOC106586124 coding upstream 403388 44470171 ~ 44475272 (+)
LOC110504116 LOC106586120 coding upstream 670555 44075822 ~ 44208107 (+)
LOC118956122 NA coding upstream 891702 43943124 ~ 43986958 (+)
LOC110519997 lct coding upstream 983012 43876264 ~ 43895648 (+)
LOC110520005 LOC106586127 coding downstream 358 44904034 ~ 44930884 (+)
LOC110520010 LOC106586134 coding downstream 85432 44989108 ~ 45010624 (+)
LOC110505238 NA coding downstream 125156 45028832 ~ 45035346 (+)
hibch hibch coding downstream 137361 45041037 ~ 45092075 (+)
LOC100135920 LOC100135920 coding downstream 202103 45105779 ~ 45108587 (+)
G262035 NA non-coding upstream 362176 44516200 ~ 44516484 (+)
G262028 NA non-coding upstream 370569 44507752 ~ 44508091 (+)
G262024 NA non-coding upstream 378063 44500343 ~ 44500597 (+)
G262016 NA non-coding upstream 386678 44491656 ~ 44491982 (+)
G261972 NA non-coding upstream 455576 44422491 ~ 44423084 (+)
G262313 NA non-coding downstream 55011 44958687 ~ 44959175 (+)
G262735 cssa21h2orf88 non-coding downstream 196363 45100039 ~ 45102438 (+)
G262807 NA non-coding downstream 294674 45198350 ~ 45198602 (+)
G262814 NA non-coding downstream 323497 45227173 ~ 45227384 (+)
G262820 NA non-coding downstream 339174 45242850 ~ 45243091 (+)
G262037 NA other upstream 353252 44520419 ~ 44525408 (+)
G261749 NA other upstream 626109 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 4426480 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 5210572 39658753 ~ 39668297 (+)
G254816 NA other upstream 6034104 38843510 ~ 38844556 (+)
G263547 LOC106586150 other downstream 935245 45838921 ~ 45839480 (+)
G263710 NA other downstream 1030443 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 1171808 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 1280458 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 1927332 46801058 ~ 46832288 (+)

Expression


Co-expression Network