LOC110520006 (LOC106581857)


Basic Information

Item Value
gene id LOC110520006
gene name LOC106581857
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44941359 ~ 44957343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596960.2
CATGGCCACTCCCCAGTCTCACTGGTGAAAGAGGAGCCCTGTGTTTTTAGACAATTCCTCTTACTGCTCCCATCATGGCCGTGCATCTGGCCCAGAGTGCGATGCAGAGGAGCGGCCGCTGGCTCCTGCTGTGCTCCATAGCCCCAGCTCTGGTCTCCACCAGGTGGGTAGGAGGCACCCGTTCTCCCGCCAACACCCTACCATCCACCTCCCAGAGTAAGATTCGGACTGCAGATGACCTCCCCAGGATCAAAACCCGGGATATGTTTTACAGAATGTTTGTCAAAGGCTACTACAACCGCCTACATGAGCTACAGgTGTATGAGAAACAGCTGTACGGCCCCATGTACAAAATGGGCATGGGCAAGTTTCACTCCATCGCCCTCAACAGTGTGGAGCTCCTGGAGGAGCTACTTAGGAAGGGTGAGAAGTTCCCCAGCCGAGGAGATATGTCCCTCTGGACAGAGTACCGGGACCTGAGAGGCATCGGCTATGGCCCCTTTACTGAGGAAGGGGAAAAGTGGTACAAGCTGCGGACTGTGCTGAACAAGCGCATGATGCACCCCAAAGACTCGGTGCAGTACGGAGACGTTGTCAACGAGGTGGTCAGTGACCTGATCAAGAGGATCTACCACCTGCGCCGGATAAGTCCATCGGGAGACCTTGTGACCAACCTGTCCAATGAGCTCTACCGATTCTCTCTGGAGGGAATCTCTTCCATCCTGTTTGAGACACGGATCGGCTGTCTGGAGGAAGAGATCCCGGTAGAGACGCAGGACTTCATCGACTCCATCGCTCAGATGTTCTCCTACAGCATGCCGGTGGCCATGCTGCCTAAGTGGAGCCGCAACATCCTGCCAGTCTACAGGCACTACATCGCTGGCTGGGAGGGCATCTTCAAATTCTCTGGGAAGTTGATTGACATGAAGATGGAGGCAATTCAGAAGCGAGTGGATACAGACCAGGAAGTCGAGGGAGAATATTTAACGTACCTCCTCTCCAACACCAAGATGACCAACAAAGAGGTGTACGGCAGCGTCACTGAGCTGTTATTGGCTGGAGTGGACACGACATCCAATACCATGATGTGGGCCATGCACCTGCTGTCCAGGTACCCCAATGCGCAGGACACCCTTTATCAGGAGGTGTCCCACTGCGTACCAGGAGACAAGATCCCATCTGCCCAAGACGTTAACCGTATGCCGTACCTCAAGGCCGTCATCAAGGAAGCACTGAGAATGTACCCTGTGGTCCCGATGAATGCACGCATCATGATAGAGAATGATATCATAATTGGAGGACATTTCTTTCCCAAGAAGACTTCGTTTACAATGTGTCACTATGCCACCAGCCAGGATGAAAAGACATTCCCAGAACCATCAAAGTTCAAGCCTGAACGATGGTTGAGGGATGGCCGAGTTCGACCAAACCCATTTGGCTCTATACCATTTGGGTTTGGGGTTCGGGGCTGTGTAGGTCGTCGTATAGCTGAACTGGAGATGTACTTGGCTCTGTCACGGATAATCAAGCTGTTTGAAATCAGACCGGACCCCAGCATAGGAGAGGTGAAAGCCCTCAATCGCACCGTCTTAGTAGCAGACAGACAAGTCAATCTGCACTTCGTGGAGAGGACAAACAGAGCTGCGCTTTGATTTGTTAAAGCTGGGTGATAGCCATGTACCCAAGTAGCAATGCTATAAAGGCCTTCAATATATCTATCGTTGAATTTAAATAAACATACATAAATAGGTTGACATTGCATTGGAAGCAGGGGGAAGCTGGACTGAAACGGCAACttgttacactccaacctaataCTGTTGTATTGAaggtttgtttttgtagtttcTGGGGTTCAGCTTCACTTCACTACTTATGTTGGTCATTCTGGAAAGGCTTTACAATGGCTTATTATTATGTACAATATGAATTTCTGTATCTAGACCAAACTATATCAAGACCAAACTATTCTCTATTTTGTTgatgaaaatgtattttcttactatggaaaatattttctgtttctgtCAATAAATTCACTACAGTGATGTTGTAGTTCTTGATATCTGCgtccccctctgtgtgtgtgagtaggcctgctttaaaattaaaataaaaacgtaCTATGTATACCTCA
>XM_021596961.2
GCTCCCAAAGACATGGCCACTCCCCAGTCTCACTGGTGAAAGAGGAGCCCTGTGTTTTTAGACAATTCCTCTTACTGCTCCCATCATGGCCGTGCATCTGGCCCAGAGTGCGATGCAGAGGAGCGGCCGCTGGCTCCTGCTGTGCTCCATAGCCCCAGCTCTGGTCTCCACCAGGTGGGTAGGAGGCACCCGTTCTCCCGCCAACACCCTACCATCCACCTCCCAGAGTAAGATTCGGACTGCAGATGACCTCCCCAGGATCAAAACCCGGGATATGTTTTACAGAATGTTTGTCAAAGGCTACTACAACCGCCTACATGAGCTACAGgTGTATGAGAAACAGCTGTACGGCCCCATGTACAAAATGGGCATGGGCAAGTTTCACTCCATCGCCCTCAACAGTGTGGAGCTCCTGGAGGAGCTACTTAGGAAGGGTGAGAAGTTCCCCAGCCGAGGAGATATGTCCCTCTGGACAGAGTACCGGGACCTGAGAGGCATCGGCTATGGCCCCTTTACTGAGGAAGGGGAAAAGTGGTACAAGCTGCGGACTGTGCTGAACAAGCGCATGATGCACCCCAAAGACTCGGTGCAGTACGGAGACGTTGTCAACGAGGTGGTCAGTGACCTGATCAAGAGGATCTACCACCTGCGCCGGATAAGTCCATCGGGAGACCTTGTGACCAACCTGTCCAATGAGCTCTACCGATTCTCTCTGGAGGGAATCTCTTCCATCCTGTTTGAGACACGGATCGGCTGTCTGGAGGAAGAGATCCCGGTAGAGACGCAGGACTTCATCGACTCCATCGCTCAGATGTTCTCCTACAGCATGCCGGTGGCCATGCTGCCTAAGTGGAGCCGCAACATCCTGCCAGTCTACAGGCACTACATCGCTGGCTGGGAGGGCATCTTCAAATTCTCTGGGAAGTTGATTGACATGAAGATGGAGGCAATTCAGAAGCGAGTGGATACAGACCAGGAAGTCGAGGGAGAATATTTAACGTACCTCCTCTCCAACACCAAGATGACCAACAAAGAGGTGTACGGCAGCGTCACTGAGCTGTTATTGGCTGGAGTGGACACGACATCCAATACCATGATGTGGGCCATGCACCTGCTGTCCAGGTACCCCAATGCGCAGGACACCCTTTATCAGGAGGTGTCCCACTGCGTACCAGGAGACAAGATCCCATCTGCCCAAGACGTTAACCGTATGCCGTACCTCAAGGCCGTCATCAAGGAAGCACTGAGAATGTACCCTGTGGTCCCGATGAATGCACGCATCATGATAGAGAATGATATCATAATTGGAGGACATTTCTTTCCCAAGAAGATAATCAAGCTGTTTGAAATCAGACCGGACCCCAGCATAGGAGAGGTGAAAGCCCTCAATCGCACCGTCTTAGTAGCAGACAGACAAGTCAATCTGCACTTCGTGGAGAGGACAAACAGAGCTGCGCTTTGATTTGTTAAAGCTGGGTGATAGCCATGTACCCAAGTAGCAATGCTATAAAGGCCTTCAATATATCTATCGTTGAATTTAAATAAACATACATAAATAGGTTGACATTGCATTGGAAGCAGGGGGAAGCTGGACTGAAACGGCAACttgttacactccaacctaataCTGTTGTATTGAaggtttgtttttgtagtttcTGGGGTTCAGCTTCACTTCACTACTTATGTTGGTCATTCTGGAAAGGCTTTACAATGGCTTATTATTATGTACAATATGAATTTCTGTATCTAGACCAAACTATATCAAGACCAAACTATTCTCTATTTTGTTgatgaaaatgtattttcttactatggaaaatattttctgtttctgtCAATAAATTCACTACAGTGATGTTGTAGTTCTTGATATCTGCgtccccctctgtgtgtgtgagtaggcctgctttaaaattaaaataaaaacgtaCTATGTATACCTCA

Function

NR:

description
sterol 26-hydroxylase, mitochondrial-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596960.2 False 2137 mRNA 0.49 9 44941359 44957332
XM_021596961.2 True 1947 mRNA 0.49 8 44941359 44957343

Neighbor

gene id symbol gene type direction distance location
LOC118956426 NA coding downstream 1047 44938735 ~ 44940312 (-)
LOC110520004 LOC106586125 coding downstream 222881 44523710 ~ 44718478 (-)
LOC110520000 NA coding downstream 472648 44425368 ~ 44468711 (-)
LOC110519999 LOC106586089 coding downstream 647308 44290826 ~ 44294051 (-)
LOC118956139 NA coding downstream 678361 44259169 ~ 44262998 (-)
LOC110520009 LOC106586132 coding upstream 7069 44964412 ~ 44986254 (-)
LOC110520012 cssa21h2orf88 coding upstream 141990 45099333 ~ 45104286 (-)
LOC110504133 NA coding upstream 222021 45179364 ~ 45190120 (-)
LOC118956634 NA coding upstream 239734 45197003 ~ 45200662 (-)
LOC110520013 LOC106586136 coding upstream 253602 45210945 ~ 45212683 (-)
G262630 NA non-coding downstream 32766 44908327 ~ 44908593 (-)
G262585 NA non-coding downstream 37690 44892408 ~ 44903669 (-)
G262592 NA non-coding downstream 99154 44841973 ~ 44842205 (-)
G262587 NA non-coding downstream 104102 44836977 ~ 44837257 (-)
G262578 NA non-coding downstream 119121 44822004 ~ 44822238 (-)
G262667 NA non-coding upstream 3036 44960379 ~ 44960586 (-)
G262668 NA non-coding upstream 3288 44960631 ~ 44960857 (-)
G262989 NA non-coding upstream 43199 45000542 ~ 45001544 (-)
G263006 NA non-coding upstream 77456 45034799 ~ 45035035 (-)
G263011 NA non-coding upstream 81908 45039251 ~ 45039528 (-)
G261580 NA other downstream 909854 43989524 ~ 44031505 (-)
G259576 LOC106599288 other downstream 2613364 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 2621974 42290259 ~ 42319385 (-)
col6a3 LOC106598405 other downstream 2626001 42291728 ~ 42329627 (-)
G259259 sdpr other downstream 3173771 41763817 ~ 41767588 (-)
G262993 NA other upstream 52829 45010172 ~ 45012249 (-)
G263274 NA other upstream 578989 45536332 ~ 45537542 (-)
G265988 NA other upstream 2641875 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 3074704 48032036 ~ 48033434 (-)

Expression


Co-expression Network