LOC110520009 (LOC106586132)


Basic Information

Item Value
gene id LOC110520009
gene name LOC106586132
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44964412 ~ 44986254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596963.2
CAAAGTAGAGCATAGAGGACATATACACTGAGCCAGCTTTCCTCTGGACACTCCCCATCTCCTGAGCCCAGTGCTTGGCTAGTGGTCTCGGGACACTCCCTAAGCGTCCATAGTTCTGGAGCTTTCTACTAGGCCTGCTACCCCCGCCAGACCCCTATCTCTTTTGGGTGGCCAGCTATCTTTGACACTTCCTAATCCTGGTCTGGAGCCTTTTCCTGTAGCATTTTCCTGGATTTCTCTCACCAAACATCCCCAATCTATTCTGGAGCTCTTCACAGCAGTGGCAGCCCCAGCGGGGCCAGGGCAAAGACCCGAGGgagaggtctacaatttgGAAATTCCCACGGGCATGTGTCAAGGCTAGCAATGGAATCTCCCCAAAGCTTGTTTGCCCAGGGTGATGAGGACCTCCAGGTGATGAAGGCGGGGGCAATGTTGAGGAAGGTCAAGTCTCGCTCTTGGAAGAAGCAGCGGCACTTCCGCCTGCAGGAGGATGGCCAGACCATCTGGTACAAGTCCAGGTGGGCAGGGACAGGCCACTCCACCTTCTCTGTGGCTGACGTGGATGTGGTGCGCGAGGGTCACCAGTCGGAGATCCTGCTAAGTATCGCTGATGAGTTCCCCGCTGACCTCTGTTTCACCCTGGTGTTCCGTGGTCGCCGCAGCAACTTGGACCTGGTGGCGGAGTCGCCGTCCGAGGCGCAGGTCTGGATCCGGGGTGTCCGCAAACTGATCCAGAACACTAAGAGCATGAATGACAAGGAGAGGCTCGACCAGTGGATCTGGGACTGGTTTCAAAAGGCGGATAAAAACAAAGATGGACGGATGAACTTCAAGGAGGTGCGCACACTGCTGAAGATGATGAACGTGGACATGAATGAAGAGTACACTCTTCGCCTTTTCACGATGGCTGATAACTCAGAGTCCGGTTGTCTGGAGAACGAggagtttgtccagttctataaGATGCTGACGAAGAGGGAGGATGTGTGGCGGGTGTTCCAGGACTATTCTCGGGACGGACAGATATTAACCCTCGCTGAGCTGGAGGACTTCCTGAagcaggagcagcaggagggggagaggagtctGGAACACGCCCAAGAGTTGATTGACCGCTATGAACCCTCAGAGAACGCCAAGAAACACGGGGCCATGTCTATAGACGGCTTCCAGATGTACCTGGTCTCTCCAGAGGGCGCCATCTTGGATCCCCAGCTGCTGGCCCTACACCAGGACATGAGCCAGCCCCTCAGCCACTACTTCATCTGCTCCTCCCACAACACCTACCTGATGGATGACCAGCTCCGAGGACAGAGCAGCCAGGAGGCCTACATCCAggCTCTGAAGCGTGGCTGTCGTTGCGTCGAGGTGGACTGTTGGGATGGGCCAAATGGAGAGCCGGTTGTTTATCACGGCCACACCTTCACGTCCAAGATACTTTTCAGAGACGTCATCACCACACTGGCGGAGTACGCCTTCAAGGTGTCTGAGTTTCCTGTCATCCTGTCCCTGGAGAACCACTGCAGCATGGAGCAGCAGAGGGTCATGGCCCAGCTTCTGGACACCATCCTGGGGGACACACTGCTCAGGGCCCCCCTCGACAGACTGGTTCCCCAAGAGCTGCCCTCTCCTCAGGATCTGAAGGGAAAGGTCCTGCTGAAAGCGAAGAAGATTGGCGGCGTAGAAGAAAGTGAAACGCTGACCGATGAGGTCACTGATGAGGTCAGCGACGAAGATGAGGCTGACCCTAAGAGCCTGTCTGCAGAGGCCCTTCGTCTCAATGATAAGAAATCCAAGTTCTCCAGGGAACTATCGGATCTGGTCGTGTACTGTAAGAGTGTTCATTTCCACAGCTTTGAGTACTCTCGCCTGCACTCCAAGTGCTACGAGATGTCCTCCTTCTCTGAATCCAAGGCCAGGAAACTTGCAAAGGACACAGGGGCAGAGTTTGTGCACCACAACAGCAGACAGCTGAGCAGGGTCTACCCCAGTGGCATGAGGACCGACTCCTCCAACTACAACCCACAGGAGCTGTGGAACGTAGGCTGTCAGATAGTGGCTCTGAACTTCCAGACAGCTGGGCCAGAGATGGATCTGAACGATGGGCTCTTCAGTCAGAACGGCTGCTGCGGCTACGTCCTCAAACCTGACTTCATGAGGAATGATGACTCTTTTGATCCAGAGAGACCCCAGGACCGGAATGGTTACACATCACTCCGCCTGTCTATCCAGGTGATCAGTGGGCAGCAGCTACCAAAGGTGAACCACAAGGAGGGCTCTATCGTTGACCCTCTGGTTAGAGTGGAGATCTACGGAGTATTTCAGGACCAAGCCAAGCAAGAAACTAGTTACATTGACAACAACGGTTTtaaccctctgtggaatgagaCCCTCAATTTTATCGTCCATGTCCCTGAGTTGGCCCTGGTGCGTTTTGTGGTGGAGGACTATGACAAGTCCTCCAGGAACGACTTCATGGGCCAGTTCACTGTGCCCTTCACCTGTATTCAGCCAGGATATCGCCATATCCACCTTCTGTCCAAAGATGGGACGGCAatccctctgtcttctctgttTGTCAACATCAAGATCTCCGAGCTAACAACAGAAGTCTGATGGCCCAAGGATTGGCTGAATAACATGCCGCAAACACCAACCACATGGGAGGGTTACAATAATACTGTTATCAGTTTTTAAAGCTAAATCTATACGCCCAATGAACTGCTTTAGATCATTTCTGCTTAAATAGCAGTTTCTGTTCAAGCAACATCAGCGGGGCCTCACACTGATGAAAGACAAAAAAACACTTGTCTCATGGCCTAGACAGCCTTACCTGGGAATTTTCAGCATTTTAGGGATTTTTTTGCTATTTCCCCAATATATAATCTTTTAAAATAATCAGAGTTTTTTAAAAACTTGAATGTCATGGGAGTGCGTCAAATCATATAGTGGTCCACGTTTGACGCCCACGCATATAACTGAGATGAAATCAATGAAGAAATGCTTGAGCCCAGTGTTAGCTTCTTTGACATGACACATTCAATAGCTCTTGGCTCATCAAACTGATACAAGGACTGACATATTGCAGGGTTCAAAGGTCATTTTAGAGTAACAGACTTTGCAATGGcctctttttaaaaaaaatcagttttATAACCATCCAAGTATTCAACATTTGCACTGTGTGCTGGTAGAGTAGCTTAATTGTATAAACAATTATTCCTCCATCTAAACATTTCAATAGATATTCTTTACAGTTCTTCAAAGTGTGGCATGAAACTATATCTATTATCTAAAGAATCGTGTTGTAAAAGTATTAAACTGTAAATGTATTTATGTGCATAGAGCTCTGTAAATAAAGAGAAATGAAA
>XM_021596962.2
GCAAAGTAGAGCATAGAGGACATATACACTGAGCCAGCTTTCCTCTGGACACTCCCCATCTCCTGAGCCCAGTGCTTGGCTAGTGGTCTCGGGACACTCCCTAAGCGTCCATAGTTCTGGAGCTTTCTACTAGGCCTGCTACCCCCGCCAGACCCCTATCTCTTTTGGGTGGCCAGCTATCTTTGACACTTCCTAATCCTGGTCTGGAGCCTTTTCCTGTAGCATTTTCCTGGATTTCTCTCACCAAACATCCCCAATCTATTCTGGAGCTCTTCACAGCAGTGGCAGCCCCAGCGGGGCCAGGGCAAAGACCCGAGGgagaggtctacaatttgGAAATTCCCACGGGCATGTGTCAAGGCTAGCAATGGAATCTCCCCAAAGCTTGTTTGCCCAGGGTGATGAGGACCTCCAGGTGATGAAGGCGGGGGCAATGTTGAGGAAGGTCAAGTCTCGCTCTTGGAAGAAGCAGCGGCACTTCCGCCTGCAGGAGGATGGCCAGACCATCTGGTACAAGTCCAGGTGGGCAGGGACAGGCCACTCCACCTTCTCTGTGGCTGACGTGGATGTGGTGCGCGAGGGTCACCAGTCGGAGATCCTGCTAAGTATCGCTGATGAGTTCCCCGCTGACCTCTGTTTCACCCTGGTGTTCCGTGGTCGCCGCAGCAACTTGGACCTGGTGGCGGAGTCGCCGTCCGAGGCGCAGGTCTGGATCCGGGGTGTCCGCAAACTGATCCAGAACACTAAGAGCATGAATGACAAGGAGAGGCTCGACCAGTGGATCTGGGACTGGTTTCAAAAGGCGGATAAAAACAAAGATGGACGGATGAACTTCAAGGAGGTGCGCACACTGCTGAAGATGATGAACGTGGACATGAATGAAGAGTACACTCTTCGCCTTTTCACGATGGCTGATAACTCAGAGTCCGGTTGTCTGGAGAACGAggagtttgtccagttctataaGATGCTGACGAAGAGGGAGGATGTGTGGCGGGTGTTCCAGGACTATTCTCGGGACGGACAGATATTAACCCTCGCTGAGCTGGAGGACTTCCTGAagcaggagcagcaggagggggagaggagtctGGAACACGCCCAAGAGTTGATTGACCGCTATGAACCCTCAGAGAACGCCAAGAAACACGGGGCCATGTCTATAGACGGCTTCCAGATGTACCTGGTCTCTCCAGAGGGCGCCATCTTGGATCCCCAGCTGCTGGCCCTACACCAGGACATGAGCCAGCCCCTCAGCCACTACTTCATCTGCTCCTCCCACAACACCTACCTGATGGATGACCAGCTCCGAGGACAGAGCAGCCAGGAGGCCTACATCCAtgtgtctgtgtgcagggCTCTGAAGCGTGGCTGTCGTTGCGTCGAGGTGGACTGTTGGGATGGGCCAAATGGAGAGCCGGTTGTTTATCACGGCCACACCTTCACGTCCAAGATACTTTTCAGAGACGTCATCACCACACTGGCGGAGTACGCCTTCAAGGTGTCTGAGTTTCCTGTCATCCTGTCCCTGGAGAACCACTGCAGCATGGAGCAGCAGAGGGTCATGGCCCAGCTTCTGGACACCATCCTGGGGGACACACTGCTCAGGGCCCCCCTCGACAGACTGGTTCCCCAAGAGCTGCCCTCTCCTCAGGATCTGAAGGGAAAGGTCCTGCTGAAAGCGAAGAAGATTGGCGGCGTAGAAGAAAGTGAAACGCTGACCGATGAGGTCACTGATGAGGTCAGCGACGAAGATGAGGCTGACCCTAAGAGCCTGTCTGCAGAGGCCCTTCGTCTCAATGATAAGAAATCCAAGTTCTCCAGGGAACTATCGGATCTGGTCGTGTACTGTAAGAGTGTTCATTTCCACAGCTTTGAGTACTCTCGCCTGCACTCCAAGTGCTACGAGATGTCCTCCTTCTCTGAATCCAAGGCCAGGAAACTTGCAAAGGACACAGGGGCAGAGTTTGTGCACCACAACAGCAGACAGCTGAGCAGGGTCTACCCCAGTGGCATGAGGACCGACTCCTCCAACTACAACCCACAGGAGCTGTGGAACGTAGGCTGTCAGATAGTGGCTCTGAACTTCCAGACAGCTGGGCCAGAGATGGATCTGAACGATGGGCTCTTCAGTCAGAACGGCTGCTGCGGCTACGTCCTCAAACCTGACTTCATGAGGAATGATGACTCTTTTGATCCAGAGAGACCCCAGGACCGGAATGGTTACACATCACTCCGCCTGTCTATCCAGGTGATCAGTGGGCAGCAGCTACCAAAGGTGAACCACAAGGAGGGCTCTATCGTTGACCCTCTGGTTAGAGTGGAGATCTACGGAGTATTTCAGGACCAAGCCAAGCAAGAAACTAGTTACATTGACAACAACGGTTTtaaccctctgtggaatgagaCCCTCAATTTTATCGTCCATGTCCCTGAGTTGGCCCTGGTGCGTTTTGTGGTGGAGGACTATGACAAGTCCTCCAGGAACGACTTCATGGGCCAGTTCACTGTGCCCTTCACCTGTATTCAGCCAGGATATCGCCATATCCACCTTCTGTCCAAAGATGGGACGGCAatccctctgtcttctctgttTGTCAACATCAAGATCTCCGAGCTAACAACAGAAGTCTGATGGCCCAAGGATTGGCTGAATAACATGCCGCAAACACCAACCACATGGGAGGGTTACAATAATACTGTTATCAGTTTTTAAAGCTAAATCTATACGCCCAATGAACTGCTTTAGATCATTTCTGCTTAAATAGCAGTTTCTGTTCAAGCAACATCAGCGGGGCCTCACACTGATGAAAGACAAAAAAACACTTGTCTCATGGCCTAGACAGCCTTACCTGGGAATTTTCAGCATTTTAGGGATTTTTTTGCTATTTCCCCAATATATAATCTTTTAAAATAATCAGAGTTTTTTAAAAACTTGAATGTCATGGGAGTGCGTCAAATCATATAGTGGTCCACGTTTGACGCCCACGCATATAACTGAGATGAAATCAATGAAGAAATGCTTGAGCCCAGTGTTAGCTTCTTTGACATGACACATTCAATAGCTCTTGGCTCATCAAACTGATACAAGGACTGACATATTGCAGGGTTCAAAGGTCATTTTAGAGTAACAGACTTTGCAATGGcctctttttaaaaaaaatcagttttATAACCATCCAAGTATTCAACATTTGCACTGTGTGCTGGTAGAGTAGCTTAATTGTATAAACAATTATTCCTCCATCTAAACATTTCAATAGATATTCTTTACAGTTCTTCAAAGTGTGGCATGAAACTATATCTATTATCTAAAGAATCGTGTTGTAAAAGTATTAAACTGTAAATGTATTTATGTGCATAGAGCTCTGTAAATAAAGAGAAATGAAA

Function

NR:

description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007340 acrosome reaction biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596963.2 False 3374 mRNA 0.50 16 44964412 44986253
XM_021596962.2 True 3390 mRNA 0.50 16 44964412 44986254

Neighbor

gene id symbol gene type direction distance location
LOC110520006 LOC106581857 coding downstream 7069 44941359 ~ 44957343 (-)
LOC110520007 NA coding downstream 16594 44944721 ~ 44947818 (-)
LOC118956426 NA coding downstream 24100 44938735 ~ 44940312 (-)
LOC110520004 LOC106586125 coding downstream 245934 44523710 ~ 44718478 (-)
LOC110520000 NA coding downstream 495701 44425368 ~ 44468711 (-)
LOC110520012 cssa21h2orf88 coding upstream 113079 45099333 ~ 45104286 (-)
LOC110504133 NA coding upstream 193110 45179364 ~ 45190120 (-)
LOC118956634 NA coding upstream 210823 45197003 ~ 45200662 (-)
LOC110520013 LOC106586136 coding upstream 224691 45210945 ~ 45212683 (-)
LOC110520016 asnsd1 coding upstream 241996 45228250 ~ 45235027 (-)
G262668 NA non-coding downstream 3555 44960631 ~ 44960857 (-)
G262667 NA non-coding downstream 3826 44960379 ~ 44960586 (-)
G262630 NA non-coding downstream 55819 44908327 ~ 44908593 (-)
G262585 NA non-coding downstream 60743 44892408 ~ 44903669 (-)
G262592 NA non-coding downstream 122207 44841973 ~ 44842205 (-)
G262989 NA non-coding upstream 14288 45000542 ~ 45001544 (-)
G263006 NA non-coding upstream 48545 45034799 ~ 45035035 (-)
G263011 NA non-coding upstream 52997 45039251 ~ 45039528 (-)
G263012 NA non-coding upstream 53964 45040218 ~ 45040539 (-)
G263039 NA non-coding upstream 92267 45078521 ~ 45078837 (-)
G261580 NA other downstream 932907 43989524 ~ 44031505 (-)
G259576 LOC106599288 other downstream 2636417 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 2645027 42290259 ~ 42319385 (-)
col6a3 LOC106598405 other downstream 2649054 42291728 ~ 42329627 (-)
G259259 sdpr other downstream 3196824 41763817 ~ 41767588 (-)
G262993 NA other upstream 23918 45010172 ~ 45012249 (-)
G263274 NA other upstream 550078 45536332 ~ 45537542 (-)
G265988 NA other upstream 2612964 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 3045793 48032036 ~ 48033434 (-)

Expression


Co-expression Network